genome.fa.s15.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  163  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49412909--49412954	18	2.7	17	93	6	76	67	0	6	26	1.15
49413096--49413275	23	7.6	23	74	14	134	58	3	5	32	1.39
49414411--49414443	17	1.9	17	100	0	66	18	6	36	39	1.75
49416872--49417300	142	3.0	142	94	0	750	31	13	16	39	1.87
49423123--49423216	47	2.0	47	100	0	188	29	31	6	31	1.83
49424310--49424436	18	6.9	18	84	3	155	33	16	20	29	1.95
49424310--49424436	54	2.3	55	84	2	175	33	16	20	29	1.95
49425605--49425666	31	2.0	31	96	0	115	32	9	14	43	1.78
49426186--49426215	11	2.6	12	89	10	53	70	6	16	6	1.31
49431149--49431210	31	2.0	31	100	0	124	32	9	16	41	1.80
49433509--49433550	21	2.0	21	86	4	59	57	7	2	33	1.39
49434344--49434377	17	1.9	18	94	5	61	32	0	0	67	0.91
49434825--49434875	25	2.0	25	100	0	102	27	3	7	60	1.42
49439450--49439607	84	1.9	84	85	7	223	21	18	29	30	1.97
49439438--49439607	43	4.0	43	80	13	208	21	18	28	31	1.97
49439768--49439799	16	1.9	17	93	6	57	40	0	21	37	1.54
49440632--49441422	396	2.0	396	98	0	1537	33	6	18	41	1.77
49444007--49444349	109	3.2	102	77	14	322	40	14	13	31	1.85
49444092--49444349	103	2.5	103	80	10	292	43	13	12	30	1.82
49444351--49444842	99	4.9	100	76	14	437	27	16	15	41	1.88
49444530--49444719	101	1.9	102	92	4	323	28	12	14	43	1.82
49451911--49451958	3	16.0	3	95	0	87	33	2	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49459655--49459687	13	2.4	14	85	5	50	36	9	3	51	1.49
49468692--49469803	558	2.0	558	99	0	2215	29	12	19	39	1.87
49476617--49476727	41	2.7	41	80	2	107	18	18	28	33	1.95
49477812--49478377	30	18.7	30	87	1	747	31	10	16	40	1.83
49488501--49488556	28	2.0	28	96	0	103	26	23	7	42	1.79
49489238--49489430	50	3.8	50	92	0	314	20	30	23	25	1.98
49489525--49489554	13	2.3	13	94	0	51	50	13	3	33	1.58
49497806--49498067	39	6.7	40	88	7	337	24	27	22	25	2.00
49512815--49512868	28	1.9	28	92	0	90	31	11	14	42	1.81
49516148--49516176	10	3.0	10	95	5	51	51	0	10	37	1.36
49517331--49517394	30	2.1	30	85	0	83	31	20	18	29	1.96
49520924--49521020	42	2.3	42	85	3	124	25	24	30	18	1.98
49525242--49525440	43	4.6	43	89	0	263	30	28	17	24	1.97
49529971--49530036	20	3.3	19	79	12	71	46	4	0	48	1.22
49530541--49530625	13	6.0	14	73	16	59	47	29	0	23	1.52
49530704--49530742	14	2.8	14	84	0	51	51	33	0	15	1.44
49530938--49531085	41	3.6	41	86	4	185	31	28	17	22	1.96
49531179--49531239	32	1.9	32	93	0	104	24	31	19	24	1.98
49532112--49532376	83	3.2	83	81	8	290	49	9	9	31	1.68
49532352--49532385	5	6.8	5	100	0	68	79	0	0	20	0.73
49532402--49532700	86	3.4	88	77	8	245	40	11	13	35	1.79
49532634--49532771	73	1.9	73	84	3	188	45	11	11	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49535785--49535837	21	2.5	21	90	0	79	30	5	32	32	1.81
49537364--49537456	45	2.1	45	100	0	186	43	13	10	32	1.79
49545225--49545265	20	2.0	21	85	4	57	41	9	7	41	1.66
49553759--49553983	106	2.1	105	84	2	281	27	21	16	35	1.94
49554741--49554795	14	3.8	14	77	17	51	74	1	3	20	1.06
49554902--49554953	25	2.1	25	100	0	104	34	30	0	34	1.58
49559786--49559846	13	4.7	13	81	0	68	39	8	14	37	1.76
49559803--49559866	13	4.9	13	76	0	56	37	7	18	35	1.80
49559803--49559864	26	2.4	26	77	0	70	38	8	17	35	1.80
49561459--49561520	31	2.0	31	87	3	90	17	16	25	40	1.90
49565999--49566060	31	2.0	31	90	3	99	17	14	27	40	1.89
49583608--49583636	6	4.8	6	100	0	58	34	0	0	65	0.93
49583738--49583826	40	2.3	39	88	5	126	38	2	5	53	1.37
49590851--49590914	19	3.3	19	85	8	92	39	7	14	39	1.74
49590852--49590927	21	3.7	21	89	3	111	40	9	11	38	1.74
49591127--49591165	19	2.0	21	85	10	55	15	10	5	69	1.34
49591387--49591423	3	12.3	3	88	11	58	35	0	0	64	0.94
49595753--49595794	15	2.9	15	86	6	61	83	0	16	0	0.65
49595756--49595793	19	2.0	20	89	5	60	81	0	18	0	0.69
49597013--49597592	131	4.5	132	88	3	872	30	21	23	25	1.99
49597579--49597954	44	8.7	43	74	9	232	27	21	23	27	1.99
49598352--49598398	3	16.0	3	79	20	55	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49598706--49598752	3	16.0	3	79	20	55	31	0	2	65	1.04
49598323--49599030	354	2.0	354	99	0	1407	32	10	5	51	1.59
49602474--49602556	41	2.0	41	90	0	130	33	27	6	32	1.81
49613111--49613149	7	5.7	7	81	6	53	33	25	12	28	1.93
49613217--49613255	14	2.9	14	88	3	62	38	15	10	35	1.81
49613554--49613599	23	2.0	23	91	0	74	32	2	19	45	1.62
49617648--49617679	3	10.7	3	100	0	64	65	0	0	34	0.93
49626329--49626382	27	1.9	29	85	7	76	55	14	9	20	1.66
49631416--49631462	16	2.9	16	84	6	51	48	2	2	46	1.25
49632447--49632501	27	2.1	26	96	3	101	25	18	27	29	1.98
49634556--49634648	40	2.3	41	80	7	102	11	33	20	34	1.89
49634556--49634650	20	4.8	19	68	12	66	11	33	20	34	1.88
49637319--49637514	57	3.4	56	77	8	182	37	19	14	28	1.91
49637326--49637485	29	5.6	28	77	7	135	36	19	15	28	1.92
49641915--49641979	32	2.1	32	97	2	123	47	12	9	30	1.72
49662168--49662193	4	6.5	4	100	0	52	76	0	0	23	0.78
49662496--49662560	32	2.1	32	97	2	123	47	12	9	30	1.72
49681991--49682029	16	2.4	17	83	12	55	56	0	5	38	1.22
49681995--49682035	16	2.7	15	88	7	57	56	0	2	41	1.13
49702369--49702415	24	1.9	24	86	4	67	36	0	36	27	1.57
49702541--49702654	55	2.1	55	89	0	174	28	10	33	27	1.90
49703086--49703277	27	7.1	27	81	5	160	38	19	21	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49703107--49703276	54	3.2	53	84	6	200	38	18	21	21	1.93
49703131--49703437	27	11.5	27	79	10	217	33	19	23	23	1.97
49703481--49703539	24	2.5	24	86	5	84	22	8	23	45	1.79
49703707--49703993	64	4.5	64	81	5	312	20	19	21	38	1.93
49703710--49703980	32	8.5	33	77	8	224	19	18	22	39	1.92
49716578--49716659	28	2.9	28	83	1	110	31	21	20	25	1.98
49716785--49716860	26	2.9	26	82	7	100	35	19	23	21	1.96
49717058--49717361	27	11.4	27	78	12	233	20	21	16	41	1.90
49717058--49717373	54	5.9	54	77	11	271	20	20	17	41	1.90
49717057--49717361	107	2.9	106	80	9	295	20	20	17	41	1.90
49717034--49717380	27	13.1	26	78	9	231	20	20	17	41	1.90
49720869--49720913	3	15.0	3	100	0	90	33	0	0	66	0.92
49722006--49722196	49	3.9	49	80	9	167	26	31	16	25	1.97
49726806--49726845	20	2.0	20	85	0	53	42	15	22	20	1.88
49730333--49732266	966	2.0	966	100	0	3868	35	17	16	30	1.92
49739091--49739149	22	2.6	22	86	10	75	71	1	5	22	1.15
49745748--49745860	51	2.2	51	96	0	208	31	7	30	30	1.86
49746054--49746141	33	2.7	33	76	0	86	45	14	23	15	1.84
49749461--49749497	19	1.9	19	89	10	58	37	2	8	51	1.46
49757240--49757277	20	1.9	20	100	0	76	50	0	13	36	1.42
49781496--49781545	7	7.1	7	88	0	64	20	0	50	30	1.49
49781946--49782117	57	3.0	58	90	3	276	29	6	9	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49785770--49785859	43	2.1	44	87	2	128	44	13	13	28	1.81
49785839--49785888	25	2.0	25	84	7	66	48	4	26	22	1.68
49786066--49786095	12	2.4	12	94	5	51	63	3	0	33	1.11
49790800--49790854	26	2.1	26	89	0	83	21	12	38	27	1.90
49793072--49793172	43	2.3	43	73	9	98	30	27	14	26	1.95
49802712--49802772	31	1.9	32	87	9	90	42	18	1	37	1.60
49805762--49805909	58	2.5	57	83	10	183	22	12	12	52	1.73
49806025--49806072	25	1.9	25	83	8	62	45	4	10	39	1.58
49806566--49806942	136	2.8	136	85	2	479	25	22	18	33	1.97
49807308--49807384	39	2.0	39	97	0	145	27	7	20	44	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187