genome.fa.s15.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  116  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34261668--34261724	21	2.6	23	80	8	64	19	49	0	31	1.49
34264451--34264638	48	3.9	48	75	6	184	22	27	21	28	1.99
34269617--34269658	20	2.1	20	86	0	57	50	14	16	19	1.79
34275053--34275150	51	1.9	51	89	0	151	43	18	16	21	1.87
34280441--34280478	20	1.9	20	88	0	58	34	2	2	60	1.24
34283198--34283228	14	2.2	14	100	0	62	45	22	19	12	1.84
34294010--34294188	68	2.6	67	86	3	232	35	18	20	25	1.96
34300789--34301029	121	2.0	121	99	0	473	42	9	17	31	1.80
34305749--34306706	477	2.0	477	97	0	1790	31	16	21	30	1.95
34307483--34307590	56	1.9	55	94	5	191	39	12	9	37	1.76
34308670--34308701	16	2.0	16	100	0	64	68	0	6	25	1.12
34314854--34314885	16	2.0	16	100	0	64	43	6	25	25	1.77
34314870--34314967	45	2.2	44	83	5	117	31	5	27	35	1.79
34315105--34315380	120	2.3	120	97	0	516	52	3	1	42	1.24
34315217--34315375	26	6.5	26	63	25	87	54	1	0	42	1.15
34315143--34315435	120	2.7	102	72	21	297	51	3	1	43	1.28
34315134--34315330	61	3.3	61	73	11	224	52	4	1	42	1.29
34317435--34317503	34	2.0	34	97	0	129	49	13	8	28	1.71
34319470--34319508	19	1.9	19	90	10	60	61	0	2	35	1.10
34319470--34319509	20	2.0	21	95	5	73	62	0	2	35	1.09
34319473--34319519	20	2.4	20	85	3	69	65	0	2	31	1.04
34319470--34319552	32	2.6	31	77	5	103	62	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34319889--34319932	18	2.4	18	92	3	70	38	2	0	59	1.10
34319922--34319948	8	3.4	8	100	0	54	33	0	0	66	0.92
34319893--34319950	18	3.4	17	79	18	66	36	1	0	62	1.06
34321333--34321377	6	7.5	6	97	0	72	55	0	11	33	1.35
34321396--34321434	20	2.1	18	85	9	51	38	17	10	33	1.84
34321630--34321667	12	2.9	14	76	15	53	60	15	0	23	1.35
34321804--34321868	27	2.4	27	89	5	96	23	29	35	12	1.91
34321951--34321987	10	3.6	10	88	3	56	70	0	29	0	0.88
34324125--34324150	12	2.2	12	100	0	52	0	26	46	26	1.53
34325800--34326270	156	3.0	156	78	13	518	31	10	6	50	1.63
34326028--34326065	13	2.9	13	85	11	51	36	0	0	63	0.95
34326601--34326775	10	17.3	10	68	12	99	1	29	0	69	0.96
34326598--34326782	8	22.9	8	67	25	81	1	29	0	69	0.96
34326597--34326791	41	4.8	41	85	7	233	1	31	0	67	0.97
34326597--34326802	84	2.5	82	83	10	255	0	32	0	66	0.98
34327384--34327518	54	2.5	54	78	7	155	14	17	20	46	1.83
34327764--34327847	31	2.7	31	100	0	168	28	5	19	46	1.73
34328044--34328355	89	3.5	89	88	3	450	23	5	13	57	1.56
34330188--34330254	20	3.3	21	77	10	59	22	11	40	25	1.88
34345836--34345860	7	3.6	7	100	0	50	88	0	0	12	0.53
34351429--34351457	13	2.2	13	100	0	58	20	20	17	41	1.90
34354300--34354475	45	4.0	44	79	8	203	42	13	20	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34354300--34354467	89	1.9	89	86	0	237	43	12	20	23	1.86
34355345--34355512	40	4.2	40	83	4	106	25	27	23	23	2.00
34355368--34355512	40	3.6	40	85	4	193	23	26	24	25	2.00
34365645--34365697	25	2.1	25	92	0	88	33	26	9	30	1.88
34367314--34367846	269	2.0	269	95	0	967	37	8	18	36	1.80
34367944--34368190	50	4.8	50	81	5	246	27	20	27	24	1.99
34368475--34369358	442	2.0	442	100	0	1768	34	11	18	35	1.87
34387598--34387733	67	2.0	68	88	4	204	34	2	21	41	1.68
34390851--34390894	13	3.5	13	81	3	54	25	6	2	65	1.28
34396941--34396985	23	2.0	22	86	4	63	62	4	0	33	1.15
34397423--34397468	21	2.2	21	84	7	58	45	4	4	45	1.43
34398369--34398403	18	1.9	18	88	11	54	62	0	0	37	0.95
34411349--34411494	51	3.1	46	69	14	111	45	2	15	36	1.60
34411340--34411575	94	2.4	94	83	7	265	41	2	16	39	1.61
34411612--34412035	126	3.4	126	92	0	695	32	19	22	26	1.97
34414184--34414226	18	2.4	18	88	0	59	44	9	27	18	1.80
34414876--34414901	7	3.7	7	100	0	52	57	15	0	26	1.38
34415351--34415427	11	7.1	10	78	16	66	46	2	27	23	1.65
34415351--34415403	22	2.4	21	87	9	79	47	1	30	20	1.61
34417911--34419073	47	24.7	47	98	0	2193	29	29	8	32	1.87
34437295--34437528	27	8.7	27	83	5	258	36	9	21	32	1.86
34437295--34437528	81	2.9	81	84	3	285	36	9	21	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34439797--34439844	24	2.0	24	100	0	96	20	16	25	37	1.93
34442233--34442364	27	4.9	27	86	3	194	33	12	25	29	1.92
34442348--34442411	27	2.4	27	81	0	74	26	18	28	26	1.98
34445416--34445445	13	2.3	13	94	0	51	10	26	26	36	1.88
34463397--34463421	12	2.1	12	100	0	50	24	36	24	16	1.94
34463581--34463650	9	7.8	9	93	0	104	37	28	11	22	1.89
34465683--34465764	28	2.9	28	80	3	94	25	13	23	37	1.91
34468602--34468971	187	2.0	186	90	0	587	26	17	12	42	1.86
34475972--34476004	17	2.0	17	88	5	50	51	3	0	45	1.16
34476079--34476179	49	2.1	49	88	0	148	35	7	10	45	1.69
34505899--34506804	27	33.6	27	99	0	1758	29	29	14	26	1.95
34522564--34522597	17	2.0	17	88	0	50	20	17	5	55	1.62
34525506--34525616	43	2.6	44	90	4	165	33	26	18	22	1.96
34525809--34526365	278	2.0	278	100	0	1114	48	11	11	28	1.73
34528032--34528207	88	2.0	88	94	0	307	25	22	11	39	1.88
34530581--34530651	7	10.1	7	87	0	79	28	46	0	25	1.53
34530843--34530885	20	2.2	20	87	8	61	39	41	0	18	1.51
34530836--34530879	13	3.4	12	82	14	52	40	38	0	20	1.53
34530782--34530945	88	1.8	90	83	7	219	45	26	0	28	1.58
34531027--34531059	14	2.3	15	94	5	59	36	33	0	30	1.58
34531443--34531603	41	3.9	41	84	3	180	28	29	18	23	1.98
34531676--34531763	40	2.2	39	80	9	97	21	22	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34536806--34537319	257	2.0	257	98	0	1001	29	23	16	29	1.97
34537503--34537658	77	2.0	77	97	0	294	28	28	17	25	1.98
34538161--34538269	54	2.0	54	92	0	182	30	25	21	22	1.99
34539352--34539535	92	2.0	92	96	0	341	38	11	22	27	1.89
34542352--34542536	79	2.3	82	84	7	238	25	27	22	24	2.00
34542333--34542536	40	5.1	40	82	8	238	25	27	22	25	2.00
34555139--34555176	6	6.3	6	87	0	58	31	2	2	63	1.22
34555286--34555319	3	11.3	3	93	0	59	32	2	0	64	1.08
34560374--34560435	20	3.2	19	77	8	54	35	3	4	56	1.37
34562309--34562353	18	2.5	18	96	0	81	62	11	8	17	1.53
34562685--34562821	50	2.7	50	84	2	177	35	25	13	25	1.93
34567294--34567580	50	5.8	50	79	8	282	32	17	26	24	1.97
34567304--34567573	75	3.6	74	74	14	252	32	17	25	24	1.97
34567303--34567580	25	11.2	24	73	11	179	32	17	26	24	1.97
34568978--34569162	79	2.3	81	84	7	236	25	27	22	24	2.00
34568978--34569162	40	4.7	40	83	7	234	25	27	22	24	2.00
34571166--34571371	65	3.2	65	64	15	172	33	19	8	38	1.82
34571173--34571436	130	2.0	130	99	0	519	32	18	7	40	1.80
34571229--34571436	65	3.2	64	64	16	165	33	17	6	41	1.76
34575205--34575337	69	1.9	70	90	1	214	32	14	16	36	1.89
34576725--34576884	47	3.4	47	97	0	293	36	7	25	30	1.84
34581558--34581609	13	3.7	13	76	18	59	7	34	32	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34581551--34581616	30	2.2	30	100	0	132	12	37	28	21	1.89
34582842--34582957	25	4.6	25	73	11	96	32	22	23	21	1.98
34582853--34582957	50	2.1	50	89	3	158	33	21	23	20	1.97
34582875--34583072	25	8.0	25	69	11	104	33	18	24	23	1.97
34592087--34592114	7	4.0	7	100	0	56	42	0	28	28	1.56
34592311--34592396	30	2.7	32	75	12	88	51	15	18	15	1.77
34599812--34599860	24	2.0	24	96	0	89	32	18	12	36	1.88
34601315--34601348	14	2.3	15	90	5	52	23	0	5	70	1.09
34603890--34603931	9	4.6	9	85	5	57	14	45	0	40	1.45
34603890--34603931	19	2.3	18	84	8	57	14	45	0	40	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187