genome.fa.s15.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  92  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26875580--26875607	6	4.7	6	100	0	56	32	35	32	0	1.58
26876186--26876277	48	1.9	48	90	0	148	51	10	6	31	1.62
26876211--26876525	62	5.1	62	98	0	603	48	7	6	36	1.58
26877801--26877853	16	3.3	16	94	0	97	39	5	33	20	1.76
26877835--26877927	44	2.1	46	91	4	154	29	4	30	36	1.77
26877835--26877940	39	2.5	44	82	11	123	30	3	31	34	1.75
26898528--26898593	33	2.0	33	87	0	96	40	15	18	25	1.89
26905185--26905220	16	2.2	16	90	0	54	41	19	2	36	1.66
26908708--26908761	28	1.9	28	88	0	81	35	24	14	25	1.94
26908862--26908915	26	2.1	26	82	0	63	35	20	22	22	1.96
26909108--26909186	27	2.9	28	92	3	126	22	17	17	41	1.90
26909150--26909222	38	1.9	38	85	0	101	20	12	24	42	1.86
26909123--26909251	65	2.0	65	87	0	186	19	13	24	43	1.86
26909186--26909258	27	2.7	27	85	4	94	17	10	26	45	1.82
26910641--26910764	50	2.5	50	75	0	122	30	24	27	17	1.97
26910707--26910834	49	2.6	49	83	6	161	32	21	25	21	1.98
26912286--26912323	5	7.8	5	85	5	51	81	2	0	15	0.80
26921041--26921188	56	2.7	56	96	1	271	27	18	27	27	1.98
26921036--26921284	56	4.7	52	84	6	238	28	20	26	24	1.99
26926341--26926453	51	2.2	51	90	0	181	36	28	9	25	1.88
26926586--26926690	33	3.1	34	80	9	101	22	46	1	28	1.63
26926618--26926696	34	2.4	34	82	6	90	22	49	1	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26927699--26927741	14	2.8	15	80	13	52	34	0	25	39	1.56
26929564--26929665	45	2.3	44	83	5	123	25	19	9	45	1.81
26938642--26938675	17	2.0	17	100	0	68	41	11	29	17	1.85
26940869--26940910	21	2.0	22	85	4	59	61	4	14	19	1.49
26944530--26944730	73	2.8	73	100	0	402	34	17	9	37	1.83
26952444--26952609	72	2.3	72	97	0	314	25	23	21	29	1.99
26953759--26953828	29	2.4	29	73	7	70	24	20	12	42	1.86
26961993--26962141	72	2.1	72	93	0	253	26	20	24	29	1.99
26963692--26963814	61	2.0	61	80	3	140	39	5	13	42	1.67
26963965--26964004	21	1.9	21	100	0	80	50	15	15	20	1.79
26964367--26964413	24	2.0	24	100	0	94	38	23	8	29	1.84
26966783--26966999	90	2.4	91	86	4	298	36	22	10	30	1.87
26966826--26966999	92	1.9	90	92	2	294	36	22	11	29	1.89
26967121--26967176	27	2.0	28	83	10	71	28	3	3	64	1.27
26967281--26967475	91	2.2	89	86	7	279	36	9	19	34	1.84
26982068--26982272	42	4.9	42	70	17	135	20	24	33	22	1.97
26982482--26982560	24	3.3	24	85	5	106	6	37	35	20	1.78
26982578--26983188	43	14.4	43	77	6	430	17	32	32	17	1.94
26982565--26983188	42	14.7	43	75	7	402	17	32	32	17	1.94
26982565--26983188	85	7.3	85	76	6	464	17	32	32	17	1.94
26982568--26983188	127	4.9	128	90	3	767	17	32	32	17	1.93
26992106--26992313	42	4.9	42	75	12	169	17	28	33	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26992751--26993085	42	7.9	42	76	9	315	17	28	33	20	1.95
26992751--26993049	85	3.5	85	81	6	338	17	29	33	20	1.95
26991709--26992949	645	1.9	645	98	0	2392	22	28	27	21	1.99
26998402--26998474	24	3.0	24	85	0	101	6	36	34	21	1.81
26998488--26998777	85	3.4	84	80	5	314	16	33	32	17	1.93
26999182--26999645	43	10.9	43	80	5	435	14	31	35	17	1.91
26999192--26999645	85	5.3	84	83	4	518	15	31	35	17	1.91
26999182--26999668	128	3.8	127	79	6	518	14	31	36	18	1.91
27005743--27005972	43	5.4	43	83	6	315	14	32	33	19	1.91
27005757--27005972	85	2.5	85	99	0	423	14	32	34	18	1.91
27007411--27007542	30	4.5	28	75	8	102	25	25	10	39	1.87
27008070--27008756	341	2.0	341	97	0	1302	40	17	10	31	1.83
27008687--27008711	12	2.1	12	100	0	50	32	16	0	52	1.44
27010234--27010468	50	4.6	50	84	3	254	25	20	30	22	1.99
27015786--27015912	47	2.7	47	83	0	146	24	16	16	42	1.88
27017716--27017798	30	2.9	29	90	3	123	22	13	14	49	1.78
27017988--27018026	20	2.0	20	84	0	51	30	5	0	64	1.15
27025203--27025243	21	2.0	21	90	0	64	53	7	14	24	1.66
27025267--27025314	20	2.3	21	79	13	55	66	6	16	10	1.41
27025249--27025309	28	2.1	28	84	6	77	72	4	13	9	1.27
27030145--27030174	13	2.3	13	94	0	51	46	0	3	50	1.18
27037672--27037720	21	2.3	20	79	6	53	38	20	0	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27039214--27039366	27	5.7	27	84	0	144	32	20	12	34	1.90
27039213--27039389	54	3.3	53	80	3	165	34	19	12	33	1.89
27039213--27039389	27	6.6	27	80	2	122	34	19	12	33	1.89
27039213--27039389	81	2.2	81	77	4	185	34	19	12	33	1.89
27040801--27040860	27	2.2	27	82	5	77	33	15	28	23	1.94
27045013--27045084	23	3.1	23	97	0	135	27	20	22	29	1.99
27047029--27047075	4	12.5	4	86	13	73	0	23	0	76	0.78
27053901--27053940	21	2.0	20	85	5	53	45	2	2	50	1.28
27056059--27056109	21	2.4	21	83	3	57	60	1	9	27	1.39
27057308--27057370	30	2.1	30	93	0	108	60	12	3	23	1.47
27060066--27060117	26	2.0	26	85	7	70	44	0	5	50	1.26
27060589--27060613	12	2.1	12	100	0	50	0	16	0	84	0.63
27060724--27060797	38	2.0	37	97	2	139	37	1	0	60	1.05
27060724--27060835	38	3.1	37	82	14	112	35	0	0	62	1.08
27072696--27072731	3	12.0	3	100	0	72	33	0	0	66	0.92
27073126--27073198	37	1.9	39	81	13	91	60	13	12	13	1.60
27074114--27074158	20	2.2	20	88	0	63	57	4	0	37	1.19
27074596--27074655	30	2.0	30	100	0	120	30	16	20	33	1.94
27079565--27079596	15	2.1	15	94	0	55	78	0	0	21	0.76
27083389--27083432	16	2.8	16	83	10	54	22	0	15	61	1.34
27083396--27083433	17	2.3	17	90	4	60	18	0	18	63	1.32
27092721--27092764	21	2.1	21	95	0	79	22	4	31	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27104280--27104438	66	2.4	66	89	0	228	20	24	28	26	1.99
27104809--27104910	51	2.0	51	100	0	204	27	15	19	37	1.92
27110758--27110824	34	1.9	35	84	3	91	29	5	13	50	1.65
27115526--27115592	34	1.9	35	84	3	91	29	5	13	50	1.65
27116023--27117685	831	2.0	831	100	0	3326	33	22	11	33	1.89
27118750--27119046	149	2.0	147	94	4	506	46	16	10	27	1.78
27119626--27120299	337	2.0	337	99	0	1339	33	16	12	36	1.87
27123670--27123853	66	2.8	66	88	1	262	21	27	26	25	1.99
27134707--27134755	13	3.8	13	78	7	55	63	6	0	30	1.19
27136782--27136856	37	2.0	37	100	0	150	49	18	10	21	1.77
27138348--27138373	4	6.5	4	100	0	52	23	0	0	76	0.78
27149137--27149312	95	1.9	95	86	4	257	38	12	19	29	1.88
27152934--27152958	13	1.9	13	100	0	50	40	4	24	32	1.73
27152896--27152961	26	2.5	26	82	0	69	43	1	22	31	1.62
27162502--27162541	15	2.8	14	85	7	62	30	0	0	70	0.88
27162509--27162551	22	2.0	22	90	9	70	34	0	0	65	0.93
27162502--27162548	8	6.2	8	78	11	55	29	0	0	70	0.88
27165327--27165366	12	2.9	15	75	21	50	25	5	5	65	1.34
27166018--27166047	14	2.1	14	100	0	60	6	13	46	33	1.69
27171143--27171174	14	2.3	14	100	0	64	6	15	46	31	1.71
27171485--27171524	18	2.2	18	90	0	62	45	10	0	45	1.37
27171432--27171508	36	2.1	36	81	9	86	38	12	0	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27171943--27171982	19	2.1	19	95	0	71	75	7	0	17	1.03
27172557--27172581	6	4.2	6	100	0	50	0	20	16	64	1.30
27173900--27173934	17	2.1	17	88	0	52	34	11	0	54	1.37
27180520--27180548	13	2.2	13	100	0	58	37	6	17	37	1.76
27186031--27186175	40	3.7	40	81	4	152	31	20	26	22	1.98
27186198--27186566	41	9.0	41	84	6	439	21	20	28	29	1.98
27186811--27186850	20	2.0	21	95	5	73	17	0	30	52	1.45
27186740--27186851	7	15.9	7	69	12	50	18	0	34	45	1.56
27187097--27187154	14	4.1	15	81	18	79	25	0	34	39	1.56
27187097--27187162	28	2.3	29	82	14	77	25	0	31	42	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187