genome.fa.s15.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  138  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41485331--41485358	10	2.8	10	100	0	56	50	0	7	42	1.30
41487882--41487934	19	2.8	18	75	24	56	43	1	0	54	1.11
41487886--41487929	22	2.0	22	86	0	61	40	2	0	56	1.11
41493306--41493585	30	9.4	29	70	14	137	21	25	13	39	1.90
41493301--41493466	89	1.9	89	91	2	271	21	27	12	39	1.88
41493366--41493526	60	2.7	60	87	0	225	22	26	11	39	1.88
41493294--41493556	30	8.8	30	73	9	180	20	26	14	38	1.91
41493303--41493585	149	1.9	149	89	1	442	21	26	13	39	1.90
41497078--41497112	18	1.9	18	88	0	52	22	40	0	37	1.55
41502790--41503040	59	4.2	60	70	11	183	22	26	13	38	1.90
41502790--41503087	30	10.1	29	71	10	167	21	25	14	38	1.92
41502792--41503057	89	3.0	89	89	1	390	22	25	14	37	1.92
41513205--41513247	17	2.5	17	96	0	77	16	11	9	62	1.53
41516826--41516862	19	1.9	19	88	0	56	48	27	0	24	1.51
41534428--41534536	42	2.6	42	83	2	139	26	33	21	19	1.97
41535941--41536132	50	3.9	50	85	1	233	27	21	30	20	1.98
41540962--41541116	57	3.1	48	77	19	179	30	15	25	28	1.96
41541040--41541071	7	4.6	7	96	0	55	40	9	31	18	1.83
41541098--41541137	7	5.7	7	87	0	62	42	12	30	15	1.83
41540950--41541129	58	3.3	57	84	11	229	32	15	26	26	1.95
41546709--41546950	50	4.9	50	80	4	249	27	21	29	21	1.99
41551877--41551915	20	2.0	20	90	10	62	15	23	7	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41552213--41552354	50	2.7	52	82	8	162	23	30	20	25	1.99
41568960--41570240	645	2.0	647	86	4	1789	35	19	11	34	1.88
41571484--41571588	39	2.6	41	78	4	115	33	15	30	20	1.94
41574161--41574229	35	2.0	35	88	0	102	31	17	21	28	1.96
41574748--41574811	27	2.3	28	86	7	87	31	18	17	32	1.94
41574716--41574811	28	3.5	27	79	11	97	31	18	19	30	1.96
41578354--41578428	27	2.8	28	70	13	75	28	20	16	36	1.93
41585468--41585506	12	3.2	12	85	0	51	20	23	5	51	1.67
41585768--41585942	50	3.5	50	77	7	176	23	28	20	28	1.99
41589403--41589437	9	3.9	9	88	0	52	51	2	0	45	1.16
41594378--41594432	28	2.0	28	85	0	74	23	23	23	29	1.99
41601445--41601641	27	7.0	27	78	11	189	44	19	18	17	1.87
41601439--41601645	54	3.7	54	79	11	216	43	19	19	17	1.88
41601465--41601595	63	2.1	63	92	2	219	47	17	18	16	1.83
41601446--41601622	90	2.0	90	87	2	257	45	18	18	18	1.86
41605442--41605519	29	2.7	28	82	11	95	24	16	30	28	1.97
41605474--41605799	174	1.9	174	89	1	510	29	14	24	30	1.95
41607566--41608569	411	2.4	409	81	5	1134	30	13	23	32	1.93
41610478--41610549	21	3.4	21	75	7	83	13	29	18	38	1.89
41610439--41610564	42	3.0	42	86	0	162	16	26	17	38	1.91
41610439--41610583	42	3.5	42	84	0	155	16	25	17	40	1.91
41614256--41614318	21	3.0	21	65	9	56	15	28	17	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41614193--41614339	42	3.5	42	80	0	150	17	25	17	39	1.91
41615974--41616047	24	3.2	24	66	14	66	51	4	5	39	1.44
41615953--41616047	44	2.1	47	90	5	151	49	3	8	38	1.49
41625191--41625370	98	1.9	96	85	4	254	46	3	2	46	1.35
41625425--41625463	13	2.9	13	88	3	51	61	2	0	35	1.10
41630682--41630798	39	3.0	39	91	0	180	46	23	2	28	1.65
41635876--41635909	10	3.4	10	95	0	59	26	23	2	47	1.66
41637980--41638092	56	2.0	56	86	3	156	33	17	15	32	1.91
41639017--41639048	16	2.0	16	93	0	55	25	15	0	59	1.36
41639163--41639270	46	2.4	43	80	13	121	35	23	17	24	1.95
41639272--41639464	51	3.8	50	78	10	205	31	28	16	23	1.96
41639270--41639458	101	1.9	102	84	5	249	31	27	16	24	1.97
41669971--41670028	28	2.1	28	93	0	98	12	41	5	41	1.64
41675950--41676017	16	4.2	16	96	0	127	26	0	35	38	1.57
41676253--41676287	18	2.0	17	88	5	52	54	0	0	45	0.99
41676140--41676424	157	1.8	157	96	0	525	43	2	5	48	1.40
41676390--41676424	15	2.2	16	90	5	54	51	0	0	48	1.00
41679641--41679695	28	2.0	28	92	0	92	63	5	29	1	1.27
41684447--41684492	22	2.1	22	100	0	92	4	13	23	58	1.52
41689761--41690111	176	2.0	176	90	0	558	33	16	23	26	1.95
41694642--41694825	92	2.0	92	100	0	368	42	6	3	47	1.45
41696736--41697082	123	2.8	123	92	0	568	27	16	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41696733--41697078	125	2.8	125	92	0	570	27	16	21	34	1.95
41701225--41701277	23	2.4	22	78	6	61	45	3	13	37	1.61
41701225--41701268	23	2.0	23	86	4	63	45	4	13	36	1.64
41702675--41702787	27	4.2	27	79	4	111	24	23	22	30	1.99
41709022--41709067	11	4.0	11	79	20	58	63	0	0	36	0.95
41712455--41712499	16	2.8	16	93	3	72	35	11	8	44	1.71
41721863--41721916	27	2.0	27	96	0	99	24	24	7	44	1.79
41725453--41725495	20	2.2	20	91	0	68	34	25	25	13	1.93
41727166--41727276	47	2.4	48	77	8	113	24	9	19	45	1.80
41730520--41730586	14	4.3	15	78	10	64	47	7	17	26	1.74
41738553--41738619	25	2.7	25	80	17	93	29	19	20	29	1.97
41745349--41745402	23	2.4	22	78	12	56	27	1	27	42	1.66
41746992--41747184	50	3.7	50	82	4	215	26	22	27	22	1.99
41746999--41747184	100	1.8	103	82	6	243	27	22	28	22	1.99
41747433--41747471	12	3.2	12	85	0	51	51	5	23	20	1.67
41797620--41797683	30	2.1	31	82	2	76	53	10	3	32	1.52
41803005--41803046	19	2.3	19	95	4	77	26	19	35	19	1.95
41807723--41807758	17	2.1	17	94	0	63	25	33	5	36	1.79
41808580--41808696	35	3.3	35	75	4	119	26	22	23	27	2.00
41811420--41811521	50	2.1	49	88	1	150	30	8	12	48	1.72
41815486--41815521	18	2.0	18	94	0	63	22	30	0	47	1.52
41815491--41815534	18	2.4	18	85	7	54	20	29	2	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41828484--41828678	49	3.8	49	81	7	178	24	28	21	26	1.99
41828482--41828625	50	2.9	49	83	3	173	22	29	21	26	1.99
41834926--41836093	600	1.9	600	92	0	1969	38	13	20	27	1.90
41836694--41836724	2	15.5	2	100	0	62	0	0	51	48	1.00
41838214--41838238	12	2.1	12	100	0	50	24	36	24	16	1.94
41838397--41838489	9	10.4	9	83	2	107	35	23	8	32	1.85
41838397--41838489	27	3.5	27	88	1	125	35	23	8	32	1.85
41838489--41838561	37	2.0	37	89	5	112	46	15	4	34	1.64
41838731--41838755	7	3.6	7	100	0	50	52	16	16	16	1.76
41838811--41838869	7	8.3	7	81	3	73	52	13	16	16	1.75
41838872--41838898	13	2.1	13	100	0	54	7	14	33	44	1.73
41839087--41839138	18	2.7	19	82	5	61	23	17	19	40	1.91
41839869--41840429	279	2.0	279	86	2	777	31	18	14	35	1.91
41842084--41842117	8	4.2	8	84	0	50	38	0	11	50	1.39
41842388--41842528	75	1.9	75	80	2	167	32	5	19	42	1.74
41842610--41842689	41	2.0	41	84	0	106	26	17	22	33	1.96
41842877--41842950	33	2.2	34	87	2	105	29	12	13	44	1.80
41845491--41845515	10	2.5	10	100	0	50	40	0	12	48	1.40
41845626--41846500	6	145.8	6	100	0	1750	33	0	16	50	1.46
41846996--41847074	41	2.0	41	84	2	106	24	17	22	35	1.95
41847008--41847099	41	2.2	41	82	0	103	27	17	25	30	1.97
41847226--41847379	69	2.2	71	82	3	186	30	12	14	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41850529--41850574	16	2.9	16	78	15	51	50	6	0	43	1.28
41852047--41852089	21	2.0	21	95	0	77	27	25	13	32	1.94
41853152--41853280	56	2.5	50	80	15	161	44	4	6	43	1.51
41853176--41853289	56	2.1	55	96	1	210	43	4	5	46	1.46
41853935--41853972	14	2.8	14	84	4	51	34	0	0	65	0.93
41854723--41854932	106	2.0	106	97	0	393	42	4	8	44	1.53
41854944--41854979	6	5.8	6	87	6	54	63	0	0	36	0.94
41855420--41855455	6	5.8	6	87	6	54	63	0	0	36	0.94
41856162--41856239	31	2.5	30	83	4	93	44	8	0	46	1.35
41856402--41856435	5	7.0	5	90	3	52	41	14	0	44	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187