genome.fa.s15.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  46  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13523315--13523414	39	2.6	38	89	4	148	37	7	0	56	1.27
13527900--13527944	20	2.1	21	84	15	58	26	2	15	55	1.52
13531464--13531508	19	2.4	17	80	20	54	60	4	0	35	1.17
13534477--13534928	225	2.0	225	89	1	701	23	13	30	32	1.93
13539410--13539435	13	2.0	13	100	0	52	0	7	7	84	0.77
13543928--13543954	13	2.1	13	100	0	54	37	7	0	55	1.28
13544165--13544233	30	2.3	29	82	2	84	39	4	2	53	1.36
13558689--13558791	51	2.0	52	83	12	133	39	8	27	24	1.84
13558684--13558886	111	1.8	111	82	4	266	35	10	31	22	1.88
13561558--13561929	185	2.0	184	87	3	534	31	12	16	39	1.86
13566654--13566702	24	2.0	24	96	0	89	30	26	10	32	1.89
13568329--13568409	39	2.1	39	97	0	153	48	6	2	43	1.41
13568572--13568598	8	3.4	8	100	0	54	77	0	0	22	0.76
13569394--13569507	60	1.9	59	83	1	147	26	17	11	44	1.82
13569635--13569724	44	2.0	44	97	0	171	46	21	11	21	1.81
13573209--13573255	21	2.3	20	85	3	58	42	4	2	51	1.33
13576068--13576109	21	2.0	22	85	4	59	50	14	9	26	1.73
13584981--13585038	29	2.0	29	100	0	116	17	6	20	55	1.65
13588019--13588061	18	2.4	17	84	7	50	62	0	9	27	1.25
13595278--13595327	16	3.1	16	100	0	100	24	12	6	58	1.56
13596350--13596401	23	2.3	23	100	0	104	50	38	0	11	1.39
13599093--13599249	78	2.0	78	93	0	269	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13601500--13601571	23	3.1	23	78	7	83	43	16	13	26	1.86
13602112--13602149	8	4.8	8	83	9	51	57	0	2	39	1.12
13602111--13602157	24	2.0	24	83	8	60	59	0	4	36	1.17
13602148--13602190	19	2.3	19	84	11	61	76	0	11	11	1.02
13602431--13602462	16	2.0	16	93	0	55	43	6	15	34	1.72
13607215--13607399	79	2.3	82	83	7	229	24	27	22	24	2.00
13607196--13607399	40	5.1	40	81	8	229	24	27	22	25	2.00
13625448--13625491	18	2.4	18	88	7	63	36	15	15	31	1.90
13625599--13625633	12	2.9	12	91	0	52	40	17	25	17	1.90
13626774--13626812	19	2.0	20	85	14	55	5	17	2	74	1.12
13626863--13626901	19	2.1	19	85	9	53	33	5	10	51	1.58
13626930--13626962	17	2.0	16	94	5	57	30	3	0	66	1.06
13629573--13629728	41	3.8	41	89	6	235	28	20	22	28	1.98
13629941--13630004	33	2.0	32	90	3	101	26	9	25	39	1.86
13629948--13630021	33	2.3	33	80	2	87	28	8	25	37	1.84
13633655--13633710	22	2.5	22	100	0	112	28	23	28	19	1.98
13642327--13642403	6	12.8	6	100	0	154	50	15	0	33	1.44
13644030--13644204	28	6.3	28	76	7	160	53	5	15	25	1.63
13644029--13644181	83	1.8	83	85	2	218	54	5	16	24	1.62
13644030--13644206	56	3.2	56	80	1	203	53	5	15	24	1.64
13644029--13644203	83	2.1	82	81	8	194	53	5	16	24	1.64
13646171--13646233	25	2.5	25	92	5	101	39	1	4	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13651722--13651881	85	1.9	84	85	1	221	52	5	16	25	1.64
13651693--13651895	28	7.2	28	76	6	167	52	3	17	26	1.62
13666597--13666834	50	4.7	50	81	6	230	28	21	27	22	1.99
13676266--13676316	26	2.0	26	88	0	75	54	0	21	23	1.44
13679266--13679558	88	3.3	89	86	4	407	33	21	23	21	1.97
13679270--13679558	44	6.6	44	83	2	348	33	21	24	21	1.97
13680287--13680312	13	2.0	13	100	0	52	76	7	7	7	1.15
13684198--13684245	21	2.3	21	85	0	60	25	22	33	18	1.97
13688303--13688612	152	2.0	152	96	0	566	27	11	25	35	1.90
13691435--13691469	12	2.9	12	100	0	70	17	22	25	34	1.96
13691520--13691570	27	1.9	26	92	4	84	47	17	19	15	1.83
13691616--13691890	41	6.8	41	81	2	306	19	18	32	29	1.96
13691616--13691890	81	3.4	81	79	5	313	19	18	32	29	1.96
13692333--13692363	15	2.0	16	93	6	55	19	3	38	38	1.68
13692167--13692721	291	1.9	286	85	7	753	27	2	27	42	1.69
13694758--13694816	27	2.2	27	90	3	93	28	0	0	71	0.87
13694741--13694804	32	1.9	34	87	9	96	29	0	0	70	0.88
13694758--13694825	27	2.6	26	86	4	91	27	0	1	70	0.96
13696220--13696292	38	1.9	38	86	5	103	36	9	9	43	1.70
13697987--13698107	61	2.1	57	84	9	154	37	10	9	42	1.71
13698144--13698207	26	2.4	27	84	12	87	31	9	3	56	1.47
13705783--13705903	40	3.0	40	100	0	242	40	19	9	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13709599--13709663	26	2.5	26	71	16	62	66	0	6	27	1.15
13709855--13709898	23	1.9	23	85	0	61	63	0	4	31	1.14
13710378--13710428	18	2.8	20	77	17	65	37	0	1	60	1.08
13712656--13712689	18	1.9	17	88	5	50	32	0	2	64	1.08
13713020--13713089	22	3.2	22	82	13	90	34	25	1	38	1.65
13713055--13713119	11	6.2	11	70	22	59	36	26	0	36	1.57
13713029--13713090	22	2.8	23	90	4	92	37	24	1	37	1.65
13713061--13713119	30	2.0	30	93	0	100	33	28	0	37	1.58
13713091--13713142	22	2.4	23	81	12	65	34	28	0	36	1.58
13713242--13713350	52	2.1	52	96	1	202	29	18	25	26	1.98
13713382--13713415	15	2.3	15	90	5	52	26	0	5	67	1.13
13715562--13716402	28	30.4	28	81	9	847	46	21	1	31	1.58
13715562--13716402	137	6.1	136	83	9	822	46	21	1	31	1.58
13716255--13716328	35	2.1	35	100	0	148	43	32	0	24	1.55
13719509--13719772	123	2.1	124	85	2	361	31	22	14	31	1.94
13723437--13723531	43	2.2	43	80	0	109	17	28	31	22	1.97
13725621--13726031	114	3.6	113	84	3	475	23	21	26	28	1.99
13730466--13730509	15	2.8	16	82	10	54	38	4	0	56	1.20
13730552--13730579	13	2.2	13	100	0	56	53	7	0	39	1.28
13730579--13730651	35	2.1	35	87	9	107	54	13	1	30	1.47
13730788--13730831	23	1.9	23	100	0	88	45	18	0	36	1.49
13730920--13731080	19	8.4	19	70	25	58	49	19	1	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13730940--13731239	9	34.8	9	72	15	224	45	20	1	32	1.61
13730959--13731250	16	17.5	16	70	17	145	45	20	1	32	1.59
13730928--13731126	71	2.8	70	78	17	191	48	19	1	31	1.56
13730918--13731080	18	8.5	19	66	23	85	49	19	1	30	1.56
13730940--13731167	25	9.1	25	72	17	170	46	20	1	32	1.59
13730917--13731235	25	12.6	25	67	22	86	46	20	1	31	1.62
13731778--13731866	44	2.0	44	100	0	178	41	13	26	17	1.87
13736753--13736794	21	2.0	21	90	9	68	33	19	40	7	1.78
13737178--13737406	43	5.4	41	78	10	228	27	19	21	31	1.98
13737197--13737406	85	2.5	85	85	3	262	27	20	21	29	1.98
13739447--13739573	61	2.1	61	81	0	146	33	6	18	41	1.75
13743466--13743568	9	11.4	9	79	8	102	29	9	22	38	1.86
13743466--13743568	27	3.8	27	83	5	127	29	9	22	38	1.86
13746500--13746545	24	1.9	24	86	0	65	47	6	4	41	1.49
13746500--13746552	24	2.2	24	82	0	61	50	5	3	39	1.44
13753406--13753445	21	1.9	21	89	0	62	27	25	15	32	1.95
13754916--13754977	22	2.8	22	77	0	70	22	29	14	33	1.94
13754959--13755011	22	2.4	22	83	0	70	18	26	18	35	1.95
13780799--13780835	6	6.0	6	87	6	56	81	0	2	16	0.81
13780799--13780834	13	2.8	13	87	4	56	83	0	2	13	0.76
13786920--13786964	20	2.3	19	85	7	63	75	2	0	22	0.91
13792200--13792262	17	3.6	17	76	2	54	34	14	25	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13805870--13805946	14	5.0	15	71	20	52	42	15	9	32	1.78
13805886--13805925	20	2.0	20	90	0	62	50	12	10	27	1.72
13805874--13805940	34	1.9	35	90	3	109	46	13	8	31	1.74
13805909--13805948	14	2.9	14	84	0	53	42	17	7	32	1.77
13806051--13806119	20	3.5	20	73	0	57	10	26	18	44	1.81
13808824--13808858	17	2.1	17	89	5	54	42	8	14	34	1.76
13818362--13818713	81	4.3	82	84	1	406	29	10	14	46	1.78
13818395--13818690	163	1.8	162	86	0	430	29	10	13	46	1.76
13822747--13822796	22	2.3	22	83	16	68	30	2	2	66	1.14
13837118--13837150	16	1.9	18	88	11	52	18	3	30	48	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187