genome.fa.s15.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  167  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50663252--50663675	125	3.4	124	84	3	564	29	18	22	30	1.97
50677949--50677992	18	2.5	19	82	14	58	43	0	4	52	1.22
50678155--50678247	44	2.1	44	88	6	134	35	26	5	32	1.79
50678229--50678268	16	2.5	17	88	12	66	30	30	5	35	1.79
50678443--50678470	4	7.0	4	100	0	56	25	0	0	75	0.81
50678971--50679027	25	2.3	25	81	6	71	71	0	1	26	0.95
50678984--50679014	14	2.2	14	94	0	53	74	0	3	22	0.96
50679930--50679965	9	4.0	9	88	0	54	13	41	8	36	1.75
50684411--50684460	22	2.3	22	92	0	82	20	12	56	12	1.67
50684419--50684464	22	2.1	22	100	0	92	17	8	56	17	1.65
50699355--50699385	15	2.1	15	100	0	62	19	6	32	41	1.77
50702442--50702489	14	3.2	15	83	16	64	52	2	0	45	1.12
50702442--50702489	15	3.2	14	80	13	60	52	2	0	45	1.12
50702539--50702596	21	2.7	22	81	2	64	50	0	3	46	1.18
50717443--50717774	171	1.9	171	100	0	664	34	12	27	25	1.93
50718949--50719171	39	5.7	40	85	8	266	25	22	27	24	2.00
50718949--50719171	79	2.8	81	84	9	282	25	22	27	24	2.00
50718949--50719204	79	3.3	79	81	10	217	26	21	27	24	1.99
50723132--50723182	7	7.6	7	78	14	54	84	3	11	0	0.75
50723140--50723187	11	4.3	11	82	12	62	87	2	10	0	0.62
50723137--50723187	18	2.8	18	93	3	84	86	1	11	0	0.66
50723132--50723187	25	2.2	26	87	9	80	83	3	12	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50723140--50723187	15	3.2	15	83	16	55	87	2	10	0	0.62
50728621--50728768	57	2.6	57	100	0	296	25	10	16	47	1.79
50730826--50730884	30	2.0	30	90	6	93	30	3	11	54	1.53
50739856--50740038	24	7.7	23	67	17	79	16	25	21	37	1.93
50758387--50758434	25	1.9	25	86	0	69	27	27	20	25	1.99
50763550--50764308	377	2.0	379	95	0	1378	43	16	11	28	1.83
50769892--50769937	16	3.1	15	87	9	67	34	0	52	13	1.40
50770338--50770388	23	2.3	22	83	12	61	45	7	0	47	1.32
50778683--50778708	11	2.4	11	100	0	52	50	0	11	38	1.39
50784148--50784297	42	3.6	43	77	7	155	34	25	18	22	1.96
50784274--50784326	26	2.0	26	85	0	70	30	32	18	18	1.96
50787372--50787401	14	2.1	14	93	6	51	66	0	0	33	0.92
50787587--50787638	23	2.3	23	86	3	70	48	1	1	48	1.24
50795937--50795974	20	1.9	20	94	0	67	23	23	34	18	1.96
50796227--50796346	27	4.4	27	84	0	150	46	20	15	18	1.84
50798565--50798611	24	1.9	24	86	4	67	36	0	38	25	1.56
50799720--50799866	27	5.4	27	89	3	224	42	21	17	19	1.89
50802401--50802505	49	2.1	50	85	1	149	26	20	31	21	1.98
50804556--50804613	17	3.5	17	85	2	73	20	5	17	56	1.59
50805992--50806055	28	2.3	28	83	0	74	26	25	10	37	1.89
50810451--50810669	109	2.0	109	98	0	420	25	19	8	47	1.77
50812285--50812385	27	3.8	27	80	2	105	38	10	20	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50839549--50839676	33	3.6	33	75	17	139	35	27	17	18	1.94
50839469--50839678	75	2.8	76	89	2	307	32	27	18	21	1.97
50839696--50839896	51	4.0	51	77	8	230	28	28	18	23	1.98
50839704--50839888	101	1.8	102	89	3	293	29	27	18	23	1.98
50849919--50849972	28	1.9	28	96	0	99	42	27	11	18	1.84
50849947--50850063	51	2.3	51	85	5	148	31	29	15	23	1.95
50854288--50854341	25	2.2	25	96	0	99	48	16	12	22	1.80
50854324--50854356	15	2.2	15	100	0	66	54	9	18	18	1.69
50854299--50854385	40	2.2	40	97	0	165	49	12	16	21	1.78
50855672--50855829	83	1.9	83	88	2	237	15	18	23	42	1.89
50869691--50869814	62	2.0	62	98	0	239	48	9	16	25	1.77
50884200--50884224	9	2.8	9	100	0	50	36	20	12	32	1.89
50890564--50890592	4	7.5	4	92	7	51	75	0	0	24	0.80
50892778--50893144	183	2.0	183	100	0	734	32	8	19	39	1.82
50894309--50894401	44	2.1	44	97	0	177	43	12	21	22	1.87
50894309--50894415	44	2.4	44	92	0	151	40	14	23	22	1.90
50894422--50894658	50	4.8	50	83	2	293	27	18	32	21	1.97
50897294--50897357	32	2.0	32	100	0	128	50	12	3	34	1.56
50904475--50904541	33	2.0	35	82	8	86	47	2	1	47	1.26
50904859--50904893	18	1.9	18	88	0	52	28	17	22	31	1.96
50908214--50908391	50	3.6	50	77	9	193	28	27	19	24	1.98
50912663--50912692	12	2.4	13	94	5	53	66	6	6	20	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50916708--50916762	25	2.2	25	80	0	65	25	10	43	20	1.84
50918255--50918341	27	3.2	27	84	11	124	40	16	17	26	1.90
50934211--50934393	40	4.6	39	81	6	170	24	20	27	26	1.99
50934247--50934428	79	2.3	80	79	3	190	26	20	27	25	1.99
50942771--50942878	21	5.1	21	74	12	71	21	18	16	43	1.88
50942780--50942878	42	2.4	42	83	10	130	20	20	17	42	1.89
50942815--50942874	21	2.9	21	80	9	77	18	21	18	41	1.90
50945950--50946002	27	2.0	27	88	0	79	43	22	18	15	1.87
50962116--50962252	65	2.1	65	91	1	220	40	2	4	53	1.33
50962137--50962266	66	2.0	64	86	7	181	38	1	6	53	1.35
50964307--50964496	79	2.4	82	82	7	221	24	22	27	25	2.00
50964313--50964496	40	4.6	40	81	9	198	24	23	27	24	2.00
50964365--50964529	79	2.1	79	83	6	201	26	21	27	24	1.99
50984679--50985073	150	2.6	151	87	2	562	30	25	18	25	1.98
50984676--50985073	50	7.9	50	76	2	332	30	25	18	25	1.98
50985736--50985794	30	2.0	30	82	0	73	27	27	6	38	1.81
50988086--50988131	15	3.1	14	87	9	65	52	13	19	15	1.75
50991601--50992030	50	8.5	50	80	3	371	32	26	16	25	1.96
50991601--50991987	101	3.8	99	77	2	369	31	26	16	25	1.97
50991593--50992030	151	2.9	151	88	1	599	31	26	16	24	1.96
50991599--50992032	101	4.3	101	77	3	309	32	26	16	25	1.96
51011854--51012016	85	1.9	85	81	2	193	25	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51012964--51012997	14	2.5	14	95	4	61	29	20	14	35	1.93
51013908--51013943	18	2.0	18	94	0	63	36	25	5	33	1.79
51023930--51024086	43	3.7	42	76	7	165	32	21	17	29	1.96
51025486--51025582	42	2.3	43	85	3	135	31	14	21	31	1.93
51028969--51029124	82	1.9	81	82	3	197	27	16	28	27	1.97
51028967--51029119	55	2.8	54	79	9	168	28	16	27	27	1.97
51028969--51029124	27	5.7	27	77	8	147	27	16	28	27	1.97
51028961--51029145	27	6.8	27	73	11	94	27	15	28	29	1.96
51028961--51029144	82	2.3	81	75	2	190	27	15	27	29	1.96
51029701--51029928	116	2.0	116	98	0	438	28	13	22	35	1.92
51040393--51040442	20	2.5	21	83	9	68	44	4	2	50	1.32
51041164--51041233	26	2.6	25	84	6	68	42	7	4	45	1.51
51041173--51041233	26	2.2	28	88	5	90	45	6	4	42	1.51
51041173--51041244	27	2.6	28	80	8	94	45	6	4	43	1.50
51047727--51047950	40	5.6	40	91	1	308	24	20	28	26	1.99
51047688--51047950	80	3.3	80	85	3	318	23	20	28	26	1.99
51047688--51047950	120	2.2	120	82	4	318	23	20	28	26	1.99
51059779--51059890	47	2.4	47	83	0	134	28	8	11	51	1.66
51063486--51063596	43	2.7	40	79	12	109	25	18	27	28	1.98
51066030--51066448	190	2.2	190	79	5	429	31	16	19	32	1.94
51068789--51068837	21	2.3	21	100	0	98	18	4	24	53	1.62
51075861--51075912	25	2.1	25	88	0	77	15	13	34	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51077020--51077287	48	5.6	48	82	3	290	25	18	29	26	1.98
51077020--51077287	96	2.8	96	82	2	331	25	18	29	26	1.98
51077020--51077288	144	1.9	144	85	3	371	25	18	29	26	1.98
51080692--51080793	54	1.9	53	95	2	186	50	11	7	29	1.67
51087050--51087122	30	2.4	30	81	0	83	53	19	17	9	1.71
51087050--51087122	15	4.9	15	81	0	65	53	19	17	9	1.71
51096566--51096787	73	3.0	73	96	1	392	39	15	14	30	1.87
51097878--51097965	23	3.9	22	92	4	106	22	0	28	48	1.51
51097892--51097965	23	3.2	23	98	0	139	20	0	31	48	1.50
51097857--51097924	16	4.2	16	69	16	50	20	0	27	51	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187