genome.fa.s15.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  119  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35292153--35292308	82	1.9	81	88	3	233	26	15	28	29	1.96
35292149--35292329	82	2.2	81	83	2	229	27	15	27	29	1.96
35300342--35300519	27	6.6	27	83	3	205	26	15	28	29	1.96
35300343--35300498	82	1.9	81	88	3	233	26	15	28	29	1.96
35300339--35300519	82	2.2	81	83	2	229	27	15	27	29	1.96
35303290--35303341	14	3.6	14	82	10	68	51	5	1	40	1.37
35303866--35303903	11	3.5	11	85	0	58	47	0	0	52	1.00
35308455--35308563	40	2.6	41	81	8	132	29	22	19	29	1.98
35308879--35309315	88	5.0	88	92	2	700	22	26	23	27	2.00
35317692--35317758	9	7.4	9	83	6	91	41	19	10	28	1.84
35317861--35317904	18	2.4	18	92	0	70	15	2	40	40	1.60
35318460--35318507	24	2.0	24	91	0	78	43	18	2	35	1.62
35322152--35322392	50	4.9	49	79	5	225	23	27	20	27	1.99
35330074--35330160	25	3.4	25	80	10	86	33	22	21	21	1.97
35330122--35330188	25	2.7	25	81	4	82	34	19	20	25	1.96
35333226--35333553	174	1.9	174	96	0	611	31	23	14	31	1.94
35333506--35333584	29	2.7	30	82	13	110	30	30	13	25	1.94
35340941--35341008	29	2.3	29	85	5	93	27	30	13	27	1.94
35340830--35341157	174	1.9	174	97	0	620	30	24	14	29	1.95
35341110--35341188	29	2.7	30	82	13	110	29	30	15	25	1.96
35354364--35354389	13	2.0	13	100	0	52	53	0	15	30	1.42
35363736--35363857	23	5.3	23	81	3	156	31	24	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35363736--35363857	46	2.7	46	90	0	181	31	24	19	23	1.98
35379157--35379375	108	2.0	108	96	0	402	35	12	13	38	1.83
35381194--35381249	28	2.0	28	100	0	112	46	7	7	39	1.59
35387799--35387845	23	2.1	22	92	4	76	31	17	25	25	1.97
35388609--35388654	16	2.6	17	80	19	51	45	0	32	21	1.52
35389006--35389042	9	4.1	9	89	0	56	32	10	10	45	1.74
35389094--35389133	9	4.4	9	93	0	71	40	22	12	25	1.89
35389135--35389282	74	2.0	71	92	3	242	22	19	14	43	1.87
35392814--35392856	22	1.9	23	85	4	61	34	9	2	53	1.46
35400765--35400826	31	2.0	31	96	0	115	29	30	6	33	1.83
35404024--35404095	26	2.8	26	85	4	83	30	19	26	23	1.98
35404714--35404883	43	4.0	42	80	6	182	31	26	15	26	1.96
35408689--35408770	23	3.6	23	78	15	98	39	0	2	58	1.11
35408744--35408783	16	2.6	15	84	7	53	35	0	0	65	0.93
35408723--35408816	22	4.5	22	67	23	69	39	1	0	59	1.04
35408863--35408929	22	3.2	22	85	10	79	41	0	1	56	1.08
35414676--35414777	30	3.4	30	76	2	107	23	21	24	30	1.99
35417084--35417143	23	2.5	24	91	2	95	26	5	31	36	1.78
35417544--35417597	24	2.2	24	83	3	63	35	12	24	27	1.92
35417551--35417598	24	2.0	24	87	0	69	33	14	22	29	1.94
35421319--35421373	19	2.8	20	81	13	60	7	18	1	72	1.16
35423120--35423144	13	1.9	13	100	0	50	56	36	0	8	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35423870--35423930	23	2.6	24	87	10	90	27	4	31	36	1.78
35426663--35426711	15	3.5	15	79	17	52	57	2	0	40	1.10
35426688--35426782	22	4.5	21	72	18	81	57	1	0	41	1.05
35426725--35426782	23	2.5	22	83	5	62	60	1	0	37	1.07
35426680--35426779	38	2.7	35	77	18	105	57	2	0	41	1.10
35426838--35426863	12	2.2	12	100	0	52	57	0	0	42	0.98
35426829--35426902	21	3.6	20	80	14	80	55	1	0	43	1.08
35426810--35426932	54	2.3	55	77	17	132	54	1	0	43	1.10
35426881--35426916	13	2.7	13	91	4	54	63	2	0	33	1.08
35426867--35426939	34	2.1	35	87	7	105	61	2	0	35	1.10
35426896--35426939	23	1.9	22	82	17	54	59	2	0	38	1.10
35426992--35427058	24	2.8	23	80	6	80	77	4	5	11	1.09
35429421--35429487	9	7.4	9	93	0	116	44	22	8	23	1.81
35429590--35429633	18	2.4	18	88	0	61	13	2	43	40	1.57
35434057--35434092	17	2.1	17	89	5	54	19	2	11	66	1.35
35434183--35434276	47	2.0	49	91	4	156	40	4	6	48	1.48
35438745--35438778	16	2.1	16	100	0	68	11	17	11	58	1.62
35443422--35443464	21	2.0	21	86	8	61	34	0	6	58	1.25
35443480--35443529	20	2.4	22	93	6	86	48	2	2	48	1.24
35443492--35443530	10	3.9	10	82	0	51	46	0	0	53	1.00
35443701--35443807	46	2.4	44	81	6	117	37	24	7	30	1.83
35444794--35444859	28	2.4	28	97	0	123	40	10	0	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35444852--35444888	19	1.9	19	88	0	56	81	8	2	8	0.97
35444917--35444993	27	2.9	27	90	0	118	25	20	31	22	1.98
35445574--35445657	18	4.7	18	72	10	64	34	14	1	50	1.51
35445566--35445650	35	2.4	37	86	8	129	37	14	1	47	1.52
35445728--35445892	82	2.0	82	97	0	312	38	7	9	44	1.65
35445973--35446038	19	3.5	19	79	4	89	50	1	10	37	1.47
35446430--35446493	27	2.4	27	91	0	110	51	0	7	40	1.31
35452188--35452215	3	9.3	3	100	0	56	67	32	0	0	0.91
35458235--35458281	11	3.8	13	88	8	55	70	2	8	19	1.24
35458248--35458281	11	2.9	12	91	8	61	73	0	8	17	1.08
35458252--35458289	11	3.6	11	93	6	62	81	0	7	10	0.87
35467058--35467086	12	2.3	13	94	5	51	68	0	0	31	0.89
35477448--35477481	6	5.7	6	89	0	50	67	14	5	11	1.39
35477903--35477928	13	2.0	13	100	0	52	69	0	15	15	1.20
35479157--35479837	87	7.8	87	90	0	1069	30	22	22	24	1.99
35479161--35479837	259	2.6	261	91	0	1070	30	22	22	24	1.99
35480002--35480203	44	4.7	42	71	9	131	31	21	19	27	1.97
35480042--35480231	44	4.5	41	71	10	139	28	24	18	27	1.98
35479956--35480238	129	2.2	128	90	1	433	31	22	19	26	1.98
35487751--35487784	17	2.0	17	88	0	50	47	8	2	41	1.50
35491580--35491762	98	1.9	98	91	2	305	30	14	16	38	1.88
35494392--35494424	14	2.4	14	94	0	57	36	15	9	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35496495--35496538	21	2.0	22	86	4	63	77	4	13	4	1.08
35497799--35497843	21	2.1	21	87	0	63	17	31	24	26	1.97
35498146--35498216	35	2.0	35	94	0	124	46	1	15	36	1.55
35500407--35500439	17	1.9	17	100	0	66	18	30	3	48	1.63
35504194--35504242	20	2.5	19	76	6	53	24	4	10	61	1.45
35504724--35504979	41	6.2	40	84	8	277	19	25	23	31	1.98
35504724--35504979	82	3.1	82	84	3	327	19	25	23	31	1.98
35504765--35505020	123	2.1	124	79	6	270	23	25	23	28	1.99
35506125--35506373	74	3.4	73	93	1	417	27	18	20	34	1.95
35509226--35509261	15	2.5	15	90	4	56	11	16	8	63	1.49
35509874--35510057	43	4.2	43	76	16	171	46	12	1	39	1.51
35509918--35510052	16	8.7	15	74	21	111	46	12	1	39	1.51
35509879--35510063	93	2.0	93	93	2	318	46	12	2	38	1.55
35510002--35510057	9	6.8	9	73	19	59	48	16	0	35	1.46
35509918--35510052	31	4.4	31	71	25	115	46	12	1	39	1.51
35509994--35510080	40	2.2	40	76	15	92	52	13	1	32	1.48
35515453--35515825	186	2.0	186	95	0	665	39	19	23	17	1.92
35515762--35515908	66	2.2	66	87	4	208	40	18	27	13	1.88
35515890--35515948	21	2.8	21	86	0	91	35	16	42	5	1.71
35516308--35516728	43	9.8	43	87	0	583	21	20	30	27	1.98
35518666--35518732	23	3.0	22	69	6	62	11	28	23	35	1.91
35522748--35522804	29	2.0	29	82	6	71	31	3	31	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35526581--35526663	41	2.0	41	97	0	157	25	20	18	36	1.95
35526578--35526677	41	2.7	35	78	16	119	25	21	18	36	1.95
35534091--35534302	33	6.2	33	68	11	95	26	24	16	32	1.96
35535488--35535545	29	2.0	28	80	9	64	46	18	0	34	1.50
35538835--35538868	8	4.1	8	85	7	50	61	0	0	38	0.96
35538835--35538868	17	2.1	16	88	5	50	61	0	0	38	0.96
35540990--35541096	42	2.5	43	83	4	119	34	28	15	21	1.94
35544889--35544936	23	2.0	24	84	8	62	25	8	8	58	1.55
35545043--35545095	20	2.5	23	82	14	69	35	0	0	64	0.94
35545626--35545669	21	2.1	21	87	8	63	38	43	0	18	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187