genome.fa.s15.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  143  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43200192--43200240	12	4.1	12	84	10	64	34	0	8	57	1.29
43200650--43200897	126	2.0	125	98	0	469	30	12	19	36	1.89
43202671--43202743	29	2.7	26	74	19	69	57	1	2	38	1.22
43202723--43202765	21	2.0	21	90	0	68	62	0	2	34	1.08
43202801--43202905	19	5.3	21	71	14	64	60	1	2	35	1.23
43202840--43202875	17	2.1	18	89	5	56	66	2	0	30	1.06
43203411--43203454	21	2.1	21	83	8	54	25	2	4	68	1.20
43203826--43203876	19	2.7	18	82	8	57	29	3	1	64	1.22
43203820--43203881	10	6.4	9	73	12	52	30	3	1	64	1.19
43205376--43205439	25	2.5	25	82	10	67	23	6	7	62	1.45
43212665--43212693	14	2.0	15	93	6	51	20	0	3	75	0.94
43216735--43216803	29	2.3	29	85	5	84	47	15	14	21	1.81
43216875--43216936	29	2.2	28	88	2	88	25	14	14	45	1.83
43217093--43217444	125	2.8	125	92	0	598	31	16	20	31	1.95
43220547--43220571	10	2.5	10	100	0	50	48	0	8	44	1.32
43220610--43220636	10	2.7	10	100	0	54	51	0	7	40	1.30
43220658--43220692	18	1.9	18	94	0	61	51	2	8	37	1.47
43220620--43220746	56	2.3	55	85	9	161	48	4	9	37	1.57
43220547--43220692	66	2.2	64	88	8	206	47	4	8	39	1.56
43220744--43220806	29	2.2	29	100	0	126	23	0	31	44	1.54
43220783--43221129	18	19.7	18	63	23	116	27	0	25	46	1.57
43220754--43220928	93	1.9	94	95	1	316	27	0	26	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43220754--43221119	47	7.4	47	73	16	312	27	0	25	46	1.57
43220847--43221104	29	8.8	29	72	21	200	27	0	26	46	1.53
43220883--43221104	123	1.8	123	95	0	408	27	0	25	46	1.53
43221017--43221089	35	2.1	35	100	0	146	24	0	31	43	1.54
43220939--43221129	100	2.0	92	86	8	265	27	0	24	47	1.56
43221045--43221107	24	2.4	27	84	12	78	23	0	31	44	1.54
43221125--43221188	25	2.5	26	87	2	103	37	12	0	50	1.41
43221597--43221631	18	1.9	18	88	0	52	31	8	34	25	1.86
43222283--43222314	7	4.6	7	100	0	64	59	12	0	28	1.34
43222624--43222725	51	2.0	51	94	0	177	13	32	21	32	1.92
43223446--43223496	10	5.0	10	78	4	57	64	0	0	35	0.94
43223446--43223509	31	2.1	30	91	2	101	60	0	0	39	0.97
43223454--43223493	21	1.9	21	89	0	62	60	0	0	40	0.97
43223511--43223623	51	2.2	51	95	0	190	42	0	29	28	1.56
43223595--43223645	22	2.3	22	100	0	102	39	0	33	27	1.57
43223860--43223941	29	2.9	28	80	5	74	40	12	14	32	1.83
43226162--43226186	13	1.9	13	100	0	50	32	16	20	32	1.94
43229632--43229774	27	5.3	27	81	3	162	37	17	19	25	1.94
43229641--43229775	54	2.5	54	86	4	191	35	19	20	24	1.96
43230270--43230310	20	2.0	20	85	0	55	12	14	31	41	1.83
43230521--43230608	6	14.3	6	72	13	63	19	17	13	50	1.79
43230521--43230587	25	2.7	25	86	4	91	19	17	13	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43233114--43233188	34	2.2	34	80	4	80	28	24	22	25	2.00
43242704--43243164	229	2.0	229	91	1	755	29	16	22	31	1.96
43247056--43247215	43	3.7	42	81	11	173	25	18	25	31	1.97
43254317--43254474	43	3.7	43	81	6	187	25	18	22	33	1.96
43254316--43254474	85	1.9	85	83	7	207	25	18	22	33	1.96
43259944--43260283	50	6.7	50	76	6	256	25	18	25	30	1.98
43260053--43260225	51	3.4	51	85	2	224	27	18	23	30	1.98
43267833--43267873	22	1.9	21	85	5	55	12	39	26	21	1.89
43270644--43270829	40	4.7	40	84	5	216	23	20	28	26	1.99
43270644--43270852	80	2.6	79	79	6	201	24	20	28	26	1.99
43278631--43278815	79	2.3	81	84	7	236	24	22	27	25	2.00
43278632--43278815	40	4.6	40	83	9	216	24	22	27	25	2.00
43278684--43278848	79	2.1	79	84	6	210	26	21	27	25	1.99
43280516--43280589	27	2.7	27	82	12	89	40	9	22	27	1.85
43295723--43295757	17	2.0	17	88	5	52	17	22	37	22	1.94
43296003--43296056	27	2.0	27	82	7	65	33	16	18	31	1.93
43296181--43296232	26	2.0	26	84	0	68	19	19	25	36	1.95
43298469--43298509	18	2.3	18	83	8	57	14	26	41	17	1.88
43298730--43299342	205	3.0	205	96	0	1109	31	13	23	31	1.93
43299362--43299917	278	2.0	278	100	0	1112	34	16	23	25	1.95
43301002--43301246	80	3.1	80	80	4	221	25	21	28	24	1.99
43300949--43301211	40	6.6	40	83	4	255	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43301064--43301246	79	2.3	80	81	1	226	26	20	27	25	1.99
43302139--43302305	85	2.0	85	95	0	298	29	19	22	28	1.98
43304301--43304478	27	6.6	27	83	3	205	26	15	28	29	1.96
43304302--43304457	82	1.9	81	88	3	233	26	15	28	29	1.96
43304298--43304478	82	2.2	81	83	2	229	27	15	27	29	1.96
43310602--43310731	42	3.1	42	77	6	129	31	26	16	24	1.97
43310602--43310719	43	2.8	41	76	8	121	30	27	17	24	1.97
43312606--43312704	48	2.0	48	82	5	119	36	20	12	31	1.89
43314351--43314487	57	2.4	57	80	7	145	30	16	23	29	1.96
43316217--43316327	34	3.3	34	83	0	141	35	20	6	37	1.78
43322667--43322781	44	2.7	41	78	11	124	25	20	24	30	1.98
43322661--43322822	43	3.8	42	74	12	141	25	17	25	31	1.97
43331190--43331300	43	2.6	40	80	8	114	23	27	33	16	1.95
43336906--43337102	55	3.6	54	80	8	186	21	23	17	37	1.94
43336930--43337113	55	3.4	54	79	6	194	21	22	17	38	1.94
43337092--43337213	47	2.6	47	88	0	181	25	22	13	38	1.91
43347099--43347154	23	2.5	22	82	8	67	21	10	3	64	1.40
43355611--43355725	58	2.0	59	92	1	196	22	27	29	20	1.98
43358653--43358970	27	11.8	26	81	8	336	35	22	23	18	1.96
43358671--43358970	54	5.6	54	86	4	410	35	22	23	18	1.95
43358696--43358970	81	3.4	81	93	2	446	36	22	23	17	1.95
43360592--43360699	26	4.2	26	91	0	180	36	23	7	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43362154--43362244	45	2.0	45	95	0	164	24	19	25	30	1.98
43366027--43366166	27	5.2	27	83	11	171	35	22	23	17	1.95
43366043--43366166	54	2.3	54	95	0	221	34	24	25	16	1.95
43366582--43366611	16	1.9	15	93	6	51	3	20	23	53	1.60
43367743--43367850	26	4.2	26	91	0	180	36	23	7	33	1.83
43368811--43368837	13	2.1	13	100	0	54	37	18	14	29	1.91
43371495--43371535	21	1.9	23	85	14	61	48	17	7	26	1.73
43371748--43371796	13	3.8	13	94	0	89	40	20	2	36	1.64
43375668--43375952	48	5.9	48	76	8	231	25	26	17	29	1.98
43375675--43375951	96	2.9	95	82	4	340	25	26	17	29	1.97
43389399--43389519	41	2.9	41	81	4	136	32	24	14	28	1.94
43389404--43389626	40	5.5	40	81	8	231	31	24	15	28	1.95
43392696--43392721	12	2.2	12	100	0	52	7	30	38	23	1.83
43395389--43395449	10	5.9	10	77	11	61	36	9	19	34	1.85
43395389--43395463	21	3.6	20	76	5	69	36	12	17	34	1.87
43398924--43398950	12	2.2	12	100	0	54	51	7	0	40	1.30
43399352--43399458	42	2.5	42	96	0	196	28	13	28	29	1.94
43399437--43399534	27	3.5	28	90	2	135	26	13	28	31	1.94
43399465--43399547	27	3.0	27	87	5	96	30	12	25	32	1.92
43399437--43399548	28	4.0	27	83	6	98	28	12	25	33	1.92
43400144--43400225	41	2.0	41	97	0	155	30	14	20	34	1.93
43400758--43401313	278	2.0	278	98	0	1085	37	16	18	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43410993--43411168	46	3.8	45	77	10	185	21	21	28	29	1.98
43410989--43411160	93	1.8	93	91	0	281	20	21	29	28	1.98
43414113--43414181	15	4.6	15	83	0	84	11	17	13	57	1.64
43414104--43414182	30	2.6	30	82	7	97	11	16	15	56	1.66
43422185--43422245	10	5.9	10	77	11	61	36	11	19	32	1.88
43422185--43422261	21	3.7	20	81	5	82	35	12	18	33	1.89
43423683--43423769	40	2.2	40	87	4	122	36	26	11	25	1.90
43424928--43425039	43	2.6	42	81	5	136	30	16	24	29	1.96
43426599--43426734	48	2.8	48	85	0	191	25	18	28	27	1.98
43426596--43426770	96	1.8	96	80	2	208	28	18	26	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187