genome.fa.s15.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  170  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51716146--51717442	650	2.0	650	98	0	2504	35	13	20	30	1.91
51722128--51722493	124	3.0	124	97	0	678	27	16	25	29	1.97
51732702--51732737	10	3.6	10	89	10	56	27	0	5	66	1.13
51733628--51733671	20	2.2	20	84	8	54	59	9	2	29	1.41
51736362--51736420	28	2.1	28	100	0	118	38	20	10	30	1.86
51740037--51740105	34	2.0	34	97	0	129	47	10	11	30	1.73
51741738--51741828	40	2.3	40	94	0	155	32	12	12	42	1.79
51742231--51742330	50	2.0	50	92	0	164	28	19	19	34	1.95
51744735--51746290	777	2.0	777	100	0	3112	33	14	12	40	1.83
51745644--51749324	922	4.0	911	92	4	5605	31	18	11	38	1.87
51745706--51749379	906	4.0	906	94	3	5954	30	18	12	38	1.87
51747671--51749552	940	2.0	940	100	0	3764	30	20	12	36	1.91
51749805--51749841	14	2.4	16	82	8	51	29	24	0	45	1.53
51754360--51754461	37	2.7	39	83	3	136	19	16	23	40	1.91
51759140--51759276	60	2.3	59	82	8	152	25	24	21	28	1.99
51761662--51761686	12	2.1	12	100	0	50	52	8	0	40	1.31
51763282--51763344	31	2.0	31	100	0	126	30	9	22	38	1.86
51763476--51763711	48	4.9	48	77	2	213	28	18	29	23	1.98
51763488--51763661	96	1.8	96	86	2	251	28	18	30	22	1.97
51777193--51777280	45	2.0	45	93	0	149	25	12	23	38	1.90
51778601--51778625	13	1.9	13	100	0	50	12	32	32	24	1.91
51788861--51789124	92	2.9	92	80	11	283	30	18	27	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51788856--51789154	46	6.4	47	75	12	244	31	17	27	23	1.97
51788953--51789179	48	4.8	47	77	14	139	31	18	26	23	1.97
51793551--51793587	11	3.5	11	78	14	51	51	13	0	35	1.41
51793550--51793590	20	2.0	20	100	0	82	48	17	0	34	1.47
51794855--51794982	64	2.0	64	98	0	247	46	6	5	42	1.52
51797580--51797621	19	2.2	19	100	0	84	54	4	0	40	1.21
51800281--51800411	48	2.7	48	87	0	190	29	25	19	25	1.99
51808845--51808980	73	1.9	73	88	0	209	28	11	15	44	1.82
51820541--51820906	49	7.7	49	77	8	301	24	27	19	28	1.99
51820544--51820911	94	3.9	96	75	12	314	24	27	19	27	1.99
51825325--51825385	30	2.0	30	83	0	77	31	22	8	37	1.84
51830249--51830275	13	2.1	13	100	0	54	0	37	22	40	1.54
51831198--51831511	47	6.6	47	71	13	182	24	27	18	28	1.98
51831347--51831518	94	1.8	94	89	2	274	25	29	18	27	1.98
51835327--51835351	13	1.9	13	100	0	50	76	16	0	8	1.02
51838634--51838856	48	4.6	48	78	2	198	28	19	27	24	1.99
51840305--51840567	40	6.6	40	88	3	325	26	27	20	24	1.99
51845205--51846300	548	2.0	548	97	0	2057	29	25	21	23	1.99
51848804--51849066	40	6.6	39	86	4	278	25	27	21	25	1.99
51848804--51849066	120	2.2	119	82	4	307	25	27	21	25	1.99
51848998--51849075	40	1.9	41	82	10	97	26	28	20	24	1.99
51853427--51853616	48	4.0	48	88	2	274	26	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51859495--51859744	48	5.2	48	85	0	313	28	26	16	28	1.97
51861295--51861349	21	2.6	21	91	0	92	16	38	25	20	1.92
51864277--51864303	12	2.2	12	100	0	54	51	7	0	40	1.30
51864791--51864968	27	6.6	27	83	3	205	26	15	28	29	1.96
51864792--51864947	82	1.9	81	88	3	233	26	15	28	29	1.96
51864788--51864968	82	2.2	81	83	2	229	27	15	27	29	1.96
51874118--51874381	40	6.7	40	89	5	360	25	21	27	25	1.99
51874118--51874414	119	2.5	118	81	9	338	26	21	27	25	1.99
51879788--51880107	48	6.7	48	74	9	276	26	18	29	25	1.98
51879775--51880097	96	3.4	96	85	2	418	26	18	29	26	1.98
51882027--51882065	21	1.9	20	89	5	60	46	25	2	25	1.66
51885342--51885386	21	2.1	21	87	0	63	26	4	24	44	1.72
51887682--51887771	43	2.1	43	97	0	171	44	17	6	31	1.75
51889103--51889142	21	2.0	20	90	5	62	47	22	2	27	1.64
51891143--51891224	10	7.6	10	75	17	67	84	9	3	2	0.84
51891157--51891224	9	7.6	8	74	19	55	83	11	4	0	0.78
51891144--51891224	29	2.9	26	78	10	90	83	9	3	2	0.85
51891158--51891222	26	2.5	26	82	7	78	83	12	4	0	0.80
51893081--51893579	88	5.7	88	96	0	885	28	17	26	27	1.98
51893085--51893404	41	7.4	41	64	19	157	29	18	25	26	1.98
51893582--51894750	132	9.1	132	90	2	1660	33	16	22	27	1.96
51893582--51894750	396	3.0	396	92	3	1854	33	16	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51894397--51894751	118	3.0	118	96	0	629	35	15	23	25	1.94
51894751--51895758	87	11.7	87	86	7	1126	36	20	22	20	1.95
51895278--51895758	79	5.7	79	77	13	444	38	20	22	18	1.94
51895390--51895718	43	7.6	44	70	18	203	37	21	21	19	1.94
51896288--51896340	18	3.3	18	65	29	55	15	52	7	24	1.68
51896801--51896934	40	3.4	40	84	2	162	22	21	31	24	1.98
51897478--51897509	14	2.1	16	88	11	50	68	0	12	18	1.20
51899410--51899528	40	3.0	40	94	0	202	29	19	28	22	1.98
51899459--51899772	156	2.0	156	99	0	619	27	15	26	29	1.96
51908181--51908305	64	2.0	64	80	6	146	28	10	13	47	1.76
51909069--51909196	64	2.0	64	95	0	229	31	17	17	33	1.93
51909498--51909533	14	2.5	14	95	4	63	63	5	11	19	1.46
51911953--51912030	29	2.7	28	84	11	104	25	15	30	28	1.96
51911983--51912484	174	2.9	174	95	0	914	29	14	24	30	1.95
51922570--51922669	50	2.0	50	98	0	191	23	18	8	51	1.72
51926319--51926377	11	4.7	13	76	17	54	18	6	6	67	1.36
51930315--51930346	16	2.0	16	93	0	55	25	15	0	59	1.36
51936273--51936365	47	2.0	47	84	2	123	32	27	16	23	1.96
51939632--51939713	42	2.0	42	85	4	112	30	24	14	30	1.95
51939673--51939765	47	2.0	47	84	2	123	32	27	16	23	1.96
51942504--51942535	16	2.0	16	93	0	55	25	15	0	59	1.36
51942659--51942757	46	2.2	43	82	12	119	32	26	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51942753--51942935	51	3.6	50	80	7	201	27	28	18	25	1.98
51972983--51973012	3	10.0	3	100	0	60	33	33	0	33	1.58
51974428--51974709	72	3.9	72	90	1	422	55	16	6	21	1.62
51991817--51991859	21	2.0	21	86	0	59	41	2	18	37	1.63
51994713--51994779	34	1.9	35	96	3	127	47	14	2	34	1.60
51995721--51995754	17	2.0	17	94	0	59	61	2	11	23	1.43
51996159--51996213	3	18.3	3	85	7	76	0	29	1	69	0.99
52009585--52009622	17	2.2	17	90	0	58	18	5	2	73	1.14
52010871--52010897	12	2.2	12	100	0	54	0	44	33	22	1.53
52013855--52013902	20	2.3	20	79	13	53	62	16	10	10	1.53
52018992--52019039	24	2.0	24	83	0	60	12	10	16	60	1.58
52019503--52019705	101	2.0	101	99	0	397	31	15	21	31	1.94
52023420--52023481	28	2.2	29	86	11	85	11	14	6	67	1.40
52029761--52029855	25	3.8	25	85	0	109	32	21	24	22	1.98
52041984--52042054	6	11.7	6	78	3	61	21	5	0	73	1.04
52045803--52045879	36	2.1	37	87	2	111	37	10	23	28	1.88
52048190--52048286	36	2.7	35	80	10	99	22	17	19	40	1.92
52048662--52048721	23	2.6	23	70	24	54	21	3	15	60	1.49
52049525--52049606	26	3.2	26	83	0	101	24	24	17	34	1.96
52061759--52061799	6	6.5	6	83	10	55	19	14	0	65	1.26
52061760--52061797	20	1.9	19	89	5	58	21	15	0	63	1.31
52061758--52061800	13	3.3	13	84	12	61	18	13	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52069018--52069055	4	9.0	4	91	8	58	23	0	2	73	0.95
52069012--52069055	12	3.3	13	87	12	63	22	0	2	75	0.92
52069012--52069064	26	2.0	26	82	13	65	24	0	1	73	0.93
52073366--52073480	58	2.0	58	96	0	212	37	20	12	29	1.89
52073939--52073981	19	2.2	20	84	12	63	32	18	0	48	1.48
52093116--52093155	18	2.3	19	84	16	52	42	12	17	27	1.85
52093786--52093818	3	11.0	3	93	0	57	3	33	0	63	1.10
52098333--52098396	32	2.1	29	78	13	67	37	12	10	39	1.78
52098340--52098402	32	2.0	32	96	0	117	31	12	14	41	1.83
52099080--52099203	66	1.9	66	86	3	178	29	32	16	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187