genome.fa.s15.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  19  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5169699--5169728	14	2.1	14	100	0	60	30	0	56	13	1.37
5176627--5176671	23	2.0	23	86	4	65	42	2	13	42	1.56
5177473--5177542	28	2.5	28	88	0	95	25	20	14	40	1.90
5179966--5180100	61	2.2	61	85	2	173	32	17	24	25	1.96
5179990--5180128	61	2.3	61	81	5	147	32	16	26	24	1.96
5200242--5200320	26	2.9	27	80	12	99	21	13	5	59	1.54
5206503--5206553	23	2.2	23	89	0	75	27	11	21	39	1.88
5213608--5213654	23	2.0	23	83	0	58	38	12	17	31	1.87
5216660--5217011	98	3.6	97	87	1	434	28	20	20	29	1.98
5216903--5217420	143	3.6	143	86	0	667	30	18	22	28	1.98
5220177--5220501	86	3.8	86	80	4	325	32	20	17	29	1.95
5221883--5221943	22	2.5	26	82	17	78	34	14	26	24	1.94
5223833--5223882	25	2.0	26	96	4	93	54	8	8	30	1.58
5231925--5231958	16	2.1	17	88	5	52	32	17	8	41	1.80
5235888--5235953	29	2.3	28	82	12	80	57	10	7	24	1.58
5240744--5240837	30	3.1	30	90	0	152	24	32	15	26	1.96
5240812--5240899	42	2.1	42	86	0	122	20	29	23	26	1.99
5243555--5243625	37	1.9	37	85	0	97	28	16	38	16	1.91
5245368--5245411	18	2.4	18	92	0	70	40	40	2	15	1.60
5245518--5245584	9	7.4	9	91	0	89	23	7	25	43	1.80
5245518--5245585	27	2.5	27	90	0	109	23	7	25	44	1.79
5252835--5253431	297	2.0	297	100	0	1194	32	11	6	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5255319--5255421	53	2.0	52	88	5	154	33	8	24	33	1.86
5266045--5266234	44	4.3	44	67	7	134	31	21	23	24	1.98
5266039--5266290	132	1.9	133	95	0	452	30	21	24	23	1.99
5266044--5266323	132	2.1	132	91	1	445	30	21	23	25	1.99
5266940--5266972	14	2.4	14	85	15	50	84	6	9	0	0.76
5266941--5266976	12	2.8	13	91	8	56	83	5	11	0	0.80
5271106--5271193	25	3.6	25	78	4	81	23	23	20	31	1.98
5271343--5271402	31	1.9	31	83	6	77	40	1	18	40	1.60
5273801--5273946	40	3.7	40	81	7	163	23	22	28	25	2.00
5276810--5276930	20	6.3	18	70	24	72	61	0	4	32	1.23
5276877--5276947	20	3.3	21	76	21	76	54	0	7	38	1.27
5276838--5276959	26	4.6	28	71	22	77	60	0	4	34	1.18
5279417--5279463	15	3.1	15	87	0	67	34	44	2	19	1.62
5286104--5286149	22	2.1	22	84	4	58	23	0	28	47	1.52
5287978--5288068	42	2.1	43	84	7	123	29	14	26	29	1.95
5287988--5288080	43	2.2	42	82	5	107	30	17	24	27	1.97
5291275--5291346	31	2.3	32	83	9	87	38	1	2	56	1.22
5293580--5294390	38	20.9	38	98	1	1415	34	18	24	23	1.96
5294264--5294480	92	2.4	92	87	1	292	38	15	25	20	1.92
5294741--5294787	25	2.0	25	83	8	62	53	4	14	27	1.60
5311813--5311874	31	2.0	31	96	0	115	33	22	22	20	1.97
5316113--5316194	43	1.9	43	87	0	119	17	24	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5327180--5327211	17	1.9	17	93	6	57	56	18	6	18	1.62
5330372--5330595	40	5.6	40	85	7	278	24	22	27	25	2.00
5330371--5330628	119	2.2	119	82	6	301	25	21	27	25	1.99
5335848--5336069	111	2.0	111	95	0	399	26	21	20	31	1.98
5343698--5343758	32	1.9	32	83	6	79	24	14	13	47	1.80
5347837--5347877	22	2.0	20	85	9	55	51	14	0	34	1.43
5354477--5354509	7	4.9	7	92	7	59	87	0	0	12	0.53
5354476--5354510	13	2.5	15	86	13	56	88	0	0	11	0.51
5356990--5357032	12	3.7	12	78	6	52	74	2	4	18	1.10
5370071--5370847	25	31.1	25	100	0	1554	44	3	28	23	1.71
5393919--5393944	6	4.3	6	100	0	52	34	15	50	0	1.45
5394228--5394260	6	5.5	6	96	0	57	15	21	33	30	1.94
5397940--5397994	28	2.0	28	100	0	110	32	7	25	34	1.83
5405657--5405695	20	2.1	18	85	9	51	46	0	7	46	1.31
5405697--5405728	8	4.2	8	84	15	50	21	0	0	78	0.76
5405696--5405736	14	2.9	14	92	3	64	21	0	0	78	0.76
5406123--5406169	13	4.0	13	76	21	50	55	0	29	14	1.40
5407553--5407872	46	7.0	46	90	0	444	41	13	23	21	1.89
5416486--5416526	20	2.0	20	100	0	82	46	9	14	29	1.77
5421865--5421928	32	2.0	32	96	0	119	21	20	34	23	1.97
5426878--5426944	33	2.0	33	91	0	107	25	28	13	32	1.93
5432523--5433051	76	7.1	75	88	3	656	30	17	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5433031--5433075	13	3.4	13	87	6	72	13	11	6	68	1.37
5432969--5433247	100	2.8	101	88	1	402	23	17	18	39	1.92
5433247--5433478	73	3.2	72	85	3	297	28	15	21	34	1.94
5433462--5433506	13	3.4	13	87	6	72	13	11	6	68	1.37
5433400--5433670	100	2.7	101	89	1	395	24	18	19	38	1.93
5433850--5434066	75	2.9	76	86	6	273	30	16	18	34	1.93
5433609--5434763	344	3.4	342	83	11	1372	27	16	19	36	1.93
5433850--5434066	76	2.9	76	83	8	273	30	16	18	34	1.93
5434306--5434446	71	2.0	72	91	2	230	29	15	21	33	1.95
5434197--5434966	159	4.9	159	80	11	770	28	15	20	35	1.93
5434464--5434912	77	6.0	76	82	7	472	28	16	21	33	1.95
5434463--5434903	229	2.0	220	82	7	537	29	16	21	32	1.95
5434841--5435138	88	3.4	88	80	9	294	30	14	19	35	1.92
5435796--5435853	30	1.9	30	100	0	116	25	48	6	18	1.73
5442767--5442827	30	2.0	30	83	0	77	31	22	8	37	1.84
5445088--5445166	37	2.1	37	90	0	122	25	31	18	24	1.98
5445285--5445874	47	12.6	47	97	0	1090	29	30	8	32	1.87
5450919--5451111	49	3.9	49	76	8	194	26	25	19	27	1.99
5451919--5451979	30	2.0	30	84	6	79	29	24	4	40	1.76
5459659--5459713	24	2.2	25	87	6	76	61	1	3	32	1.24
5459659--5459718	25	2.4	24	78	13	68	58	1	5	35	1.30
5467293--5467334	22	1.9	22	85	9	59	33	9	14	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5473875--5474045	45	3.9	45	80	3	170	24	18	26	29	1.98
5492682--5492822	68	2.1	69	94	1	248	40	19	7	32	1.79
5494524--5494565	22	1.9	22	85	9	59	47	2	35	14	1.57
5494829--5496606	889	2.0	889	100	0	3556	34	20	13	30	1.92
5498561--5498629	34	2.0	34	97	0	129	43	28	2	24	1.69
5499969--5500008	8	5.1	8	93	6	73	27	25	0	47	1.52
5499972--5500004	15	2.2	15	100	0	66	24	24	0	51	1.48
5501585--5501628	20	2.2	20	83	0	52	43	2	15	38	1.60
5505412--5505441	14	2.1	14	93	0	51	20	16	6	56	1.62
5505784--5506300	132	3.9	134	82	5	520	28	19	17	34	1.95
5509354--5509429	38	2.0	38	97	0	143	30	14	23	31	1.94
5510726--5510982	40	6.5	40	92	2	387	22	23	28	25	1.99
5524813--5524864	21	2.5	21	93	0	86	17	28	34	19	1.94
5534244--5534552	47	6.6	47	94	0	510	29	30	8	32	1.87
5534244--5534664	141	2.9	141	86	4	513	28	30	9	32	1.88
5534557--5534596	19	2.1	19	90	0	62	30	27	7	35	1.84
5534576--5534665	47	1.9	47	93	0	153	26	27	11	34	1.90
5545522--5546211	345	2.0	345	100	0	1380	22	16	22	38	1.93
5567658--5567885	46	5.0	46	87	1	287	22	24	13	39	1.90
5570272--5570420	74	2.0	74	98	0	289	36	14	10	38	1.80
5572621--5572848	46	5.0	46	92	1	332	21	24	14	38	1.92
5581774--5582413	47	13.6	47	97	0	1136	31	10	30	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5582387--5582523	46	3.0	46	87	0	193	35	8	30	25	1.86
5582668--5582782	37	3.1	37	96	0	203	21	20	31	26	1.98
5592398--5592502	42	2.5	42	81	6	115	20	21	31	25	1.98
5594387--5594446	21	2.9	21	78	9	68	50	21	1	26	1.59
5594548--5594604	21	2.7	21	88	2	78	50	26	0	22	1.49
5596628--5596919	145	2.0	145	98	0	566	37	21	13	28	1.91
5597009--5597220	106	2.0	106	99	0	415	40	15	13	30	1.85
5597265--5597569	153	2.0	153	99	0	601	30	20	14	34	1.92
5612398--5612473	29	2.6	28	83	10	91	27	14	27	30	1.95
5612427--5612753	174	1.9	174	97	0	618	30	14	24	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187