genome.fa.s15.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  179  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54641345--54641369	13	1.9	13	100	0	50	48	0	8	44	1.32
54641144--54641442	151	2.0	149	84	7	376	48	10	6	35	1.61
54641489--54641533	23	2.0	23	86	0	63	42	8	0	48	1.34
54641534--54641570	15	2.4	16	82	13	51	43	5	0	51	1.24
54643804--54643891	35	2.5	36	79	5	90	29	18	22	29	1.97
54644335--54644488	28	5.5	28	83	3	175	31	19	19	29	1.96
54644326--54644488	84	1.9	84	83	2	211	31	19	19	28	1.97
54653413--54653438	8	3.2	8	100	0	52	42	11	0	46	1.40
54655998--54656054	24	2.4	24	85	5	71	36	3	10	49	1.55
54660399--54660445	24	2.0	24	86	0	67	34	4	12	48	1.61
54671230--54671282	25	2.1	25	92	0	88	52	16	1	28	1.54
54676009--54676055	20	2.4	19	79	6	58	68	6	2	23	1.24
54678164--54678209	23	2.0	23	82	0	56	17	32	28	21	1.96
54678721--54678764	22	1.9	24	81	9	56	45	13	4	36	1.64
54686123--54686451	164	2.0	164	97	0	622	24	25	12	37	1.90
54688687--54688729	22	1.9	23	90	4	70	60	2	0	37	1.10
54688719--54688803	27	3.0	27	89	5	116	48	0	1	50	1.08
54690800--54691050	27	9.3	27	82	4	265	18	19	17	44	1.87
54690799--54691025	80	2.8	80	89	1	346	19	21	16	42	1.89
54695244--54695322	39	2.0	39	97	0	149	31	10	21	36	1.87
54703683--54703721	18	2.2	18	95	0	69	38	10	12	38	1.78
54710461--54710509	24	2.0	24	100	0	98	30	20	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54710917--54710952	17	2.1	17	100	0	72	36	22	11	30	1.89
54717904--54717953	3	16.7	3	87	0	73	36	4	0	60	1.16
54720630--54720674	22	2.0	22	91	0	72	33	2	15	48	1.57
54724407--54724451	22	2.0	22	91	0	72	33	2	15	48	1.57
54725791--54725826	18	2.0	18	100	0	72	50	11	22	16	1.77
54729173--54729289	39	3.0	39	83	5	137	31	11	28	28	1.92
54737841--54737869	4	7.2	4	100	0	58	51	24	0	24	1.48
54750968--54751015	20	2.4	20	85	0	60	52	6	8	33	1.57
54760763--54760802	14	2.9	14	88	0	53	50	7	32	10	1.64
54774543--54774751	43	4.9	43	83	5	226	33	28	19	19	1.96
54776103--54776304	112	1.8	112	88	0	314	38	14	16	30	1.89
54782860--54782916	28	2.0	28	89	0	87	22	14	22	40	1.90
54795129--54795196	34	2.0	34	94	0	118	39	19	16	25	1.91
54796418--54796477	22	2.7	21	85	10	84	0	15	11	73	1.10
54796415--54796466	13	4.4	12	77	20	56	0	15	9	75	1.05
54797004--54797068	32	2.1	32	97	2	123	47	12	9	30	1.72
54797748--54797791	20	2.3	20	84	7	56	34	25	4	36	1.76
54798857--54798893	18	2.1	18	100	0	74	51	5	10	32	1.60
54800496--54800667	40	4.3	40	88	2	222	25	27	21	25	1.99
54800498--54800720	40	5.6	39	83	5	216	25	27	21	25	1.99
54800496--54800720	80	2.8	79	80	7	240	25	27	21	25	1.99
54800652--54800729	40	1.9	41	82	10	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54807158--54807214	23	2.5	23	86	13	82	12	38	8	40	1.74
54809744--54809782	18	2.1	19	85	4	53	30	10	20	38	1.86
54810359--54810439	17	4.7	16	71	25	51	37	3	3	55	1.35
54823081--54823135	2	27.5	2	100	0	110	0	49	0	50	1.00
54830467--54830580	5	22.8	5	88	0	156	39	4	19	36	1.72
54842128--54842181	25	2.1	26	82	6	65	31	5	1	61	1.30
54846754--54846807	22	2.3	24	78	15	60	37	3	7	51	1.48
54848777--54848954	27	6.6	27	84	3	205	29	28	15	26	1.96
54848798--54848953	82	1.9	81	88	3	233	29	28	15	26	1.96
54860300--54860336	15	2.5	15	95	0	65	48	2	5	43	1.40
54863883--54863944	33	1.9	32	87	9	90	41	17	17	22	1.90
54863895--54863947	16	3.2	16	72	15	54	39	18	18	22	1.92
54868601--54868647	21	2.2	21	85	7	60	36	19	17	27	1.93
54870011--54870063	25	2.1	26	85	3	72	35	0	0	64	0.94
54874708--54874799	43	2.1	44	97	2	177	23	21	20	33	1.97
54887286--54887343	9	6.4	9	87	0	89	39	24	12	24	1.89
54887286--54887343	27	2.1	27	96	0	107	39	24	12	24	1.89
54894417--54894459	15	2.6	17	89	10	72	37	16	4	41	1.69
54903658--54903749	11	8.9	11	72	21	83	57	0	1	41	1.06
54903658--54903772	40	2.8	41	89	4	178	59	0	1	39	1.08
54903693--54903726	17	2.0	17	88	0	50	64	0	0	35	0.94
54903664--54903768	10	10.5	10	69	21	60	62	0	0	36	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54904776--54904838	19	3.4	19	76	10	58	71	0	3	25	1.01
54904786--54904827	19	2.2	20	91	4	68	71	0	2	26	0.98
54904805--54904858	28	2.0	27	82	10	65	64	1	1	31	1.14
54907935--54908012	35	2.2	35	93	0	129	26	24	21	26	1.99
54920752--54921109	103	3.5	103	92	1	549	18	19	28	33	1.96
54928078--54928279	103	2.0	103	97	0	386	19	18	28	33	1.96
54928218--54928322	43	2.5	43	92	1	167	22	18	29	29	1.97
54928115--54928386	145	1.9	146	88	2	413	20	19	29	30	1.97
54930559--54930588	13	2.3	13	94	0	51	56	13	6	23	1.60
54933813--54933998	41	4.6	41	86	2	241	25	26	19	28	1.99
54941077--54941185	41	2.6	41	82	4	139	22	29	19	28	1.98
54943722--54943785	18	3.6	18	72	8	58	71	1	20	6	1.15
54944219--54944248	16	1.9	15	93	6	51	20	3	33	43	1.68
54949422--54949453	15	2.1	16	94	5	57	78	3	6	12	1.06
54952398--54952427	12	2.5	12	94	0	51	6	30	40	23	1.80
54959723--54959795	26	2.8	26	78	11	78	34	39	13	12	1.82
54962575--54962637	31	2.0	32	93	3	110	39	7	22	30	1.82
54964721--54964803	35	2.4	35	79	4	96	30	27	19	22	1.98
54965812--54965870	25	2.3	26	85	8	86	18	16	22	42	1.89
54967714--54967814	27	3.8	26	76	6	96	33	21	24	19	1.97
54967930--54968260	27	12.2	27	83	5	373	25	15	19	39	1.91
54967930--54968260	81	4.1	81	85	3	423	25	15	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54970404--54970445	12	3.4	13	83	9	52	54	0	7	38	1.28
54982089--54982271	40	4.6	39	81	6	170	24	20	27	26	1.99
54982125--54982306	79	2.3	80	79	3	190	26	20	27	25	1.99
54986070--54986098	12	2.3	13	94	5	51	34	10	0	55	1.34
55002029--55002087	21	2.8	21	87	10	77	54	6	1	37	1.37
55002441--55002484	22	2.0	22	95	0	79	36	25	29	9	1.86
55003095--55003170	21	3.7	21	80	7	102	34	14	10	40	1.80
55003108--55003171	19	3.3	19	87	8	92	34	17	9	39	1.82
55003533--55003704	44	3.9	44	77	8	168	30	22	16	31	1.95
55003685--55004483	132	6.1	132	91	0	1267	25	24	19	30	1.98
55003690--55004478	263	3.0	264	91	0	1258	25	24	19	30	1.98
55003853--55004433	44	13.2	44	64	11	150	25	23	19	30	1.98
55007065--55007091	6	4.5	6	100	0	54	0	14	0	85	0.61
55010234--55010301	23	3.0	22	85	10	84	54	7	1	36	1.37
55011265--55011344	19	3.7	21	71	22	76	37	12	7	42	1.71
55011257--55011345	19	4.4	19	70	24	58	35	14	6	42	1.72
55011242--55011344	45	2.3	44	85	9	131	38	13	6	40	1.71
55011474--55011502	12	2.3	13	94	5	51	34	10	0	55	1.34
55021997--55022049	25	2.1	25	100	0	106	41	18	11	28	1.85
55045843--55045946	52	2.0	52	98	0	199	39	19	4	36	1.73
55048495--55048529	18	2.0	17	88	5	52	54	0	2	42	1.15
55048658--55048712	19	3.3	19	62	32	52	58	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55048802--55048826	7	3.6	7	100	0	50	44	0	12	44	1.41
55049796--55049827	15	2.1	15	100	0	64	28	28	18	25	1.98
55052242--55052268	1	27.0	1	100	0	54	0	0	0	100	0.00
55056582--55056614	14	2.3	15	89	5	50	18	3	0	78	0.87
55058564--55058617	19	2.8	19	94	0	99	37	16	9	37	1.81
55058541--55058617	38	1.9	40	87	10	113	38	16	7	36	1.78
55059263--55059301	20	2.0	20	94	0	69	35	30	15	17	1.91
55060905--55060954	21	2.4	21	80	16	59	50	32	0	18	1.47
55060920--55060953	11	3.1	11	87	12	52	44	35	0	20	1.52
55062604--55062712	30	3.7	29	79	4	128	30	14	22	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187