genome.fa.s15.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  182  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55636494--55636527	15	2.2	16	89	5	52	38	0	0	61	0.96
55639112--55639159	24	2.0	24	100	0	96	54	4	8	33	1.50
55640356--55640380	12	2.1	12	100	0	50	68	0	8	24	1.16
55642660--55642692	17	2.0	17	88	5	50	45	0	0	54	0.99
55642654--55642852	68	3.2	57	69	22	141	40	5	4	50	1.43
55653358--55653420	29	2.2	29	91	0	99	36	12	26	23	1.91
55653424--55653482	30	2.0	30	86	0	82	40	13	27	18	1.88
55654909--55654952	23	1.9	23	82	17	56	22	0	20	56	1.42
55656822--55656861	8	4.9	8	84	3	53	80	2	0	17	0.83
55660635--55660677	21	2.0	21	86	8	61	58	4	9	27	1.49
55661377--55661415	10	4.0	10	86	6	62	64	10	0	25	1.25
55664748--55664906	79	2.0	79	97	0	300	28	15	12	43	1.83
55666904--55666945	19	2.2	19	83	8	50	42	4	7	45	1.52
55671847--55671878	12	2.7	12	90	0	55	6	46	18	28	1.73
55685376--55685433	23	2.5	23	86	5	73	39	6	20	32	1.79
55685463--55685606	23	6.4	22	80	12	141	36	0	21	41	1.58
55685297--55685524	114	2.0	115	87	2	334	32	4	22	39	1.75
55685467--55685601	46	2.9	46	84	6	175	36	0	22	40	1.59
55685705--55685761	23	2.5	23	73	0	60	22	1	35	40	1.65
55686645--55686675	5	6.4	5	92	7	55	19	0	0	80	0.71
55689877--55689909	15	2.1	16	88	5	50	54	0	24	21	1.45
55689867--55689918	20	2.6	20	90	6	79	51	0	25	23	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55691608--55691817	40	5.3	39	87	5	233	24	21	28	25	1.99
55691555--55691817	120	2.2	120	81	4	300	25	21	27	25	1.99
55691608--55691852	80	3.1	80	81	3	228	25	21	28	24	1.99
55695430--55695535	20	5.3	20	71	8	90	28	17	34	18	1.94
55695427--55695552	40	3.2	40	81	0	153	31	17	33	17	1.93
55695518--55695596	40	2.0	40	82	5	97	34	12	30	22	1.92
55710273--55710452	51	3.5	51	78	5	159	22	17	28	31	1.96
55713504--55713813	41	7.5	41	85	1	350	33	14	28	23	1.94
55713803--55713845	21	2.0	21	100	0	86	27	4	23	44	1.73
55715070--55715150	27	3.0	27	85	0	108	39	22	14	23	1.91
55715376--55715470	26	3.7	26	77	2	93	16	16	22	44	1.87
55715376--55715491	52	2.2	52	90	3	189	16	18	22	43	1.88
55715408--55715493	26	3.3	26	81	0	100	16	20	22	40	1.91
55715609--55715695	30	2.9	29	82	3	111	19	26	24	29	1.98
55715609--55715695	29	2.9	29	84	3	111	19	26	24	29	1.98
55722250--55722345	21	4.7	20	66	19	63	33	16	31	18	1.94
55722144--55722345	41	4.9	41	83	0	233	33	16	29	20	1.94
55726996--55727032	8	4.6	8	96	0	65	62	21	16	0	1.33
55730672--55730732	16	3.8	16	76	6	61	60	11	18	9	1.57
55730670--55730739	16	4.4	16	75	5	52	64	10	15	10	1.49
55735794--55735836	21	2.0	21	90	0	68	60	4	6	27	1.43
55736773--55737050	40	6.9	40	85	1	317	15	12	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55736767--55737050	120	2.4	120	83	1	354	15	12	25	47	1.80
55737594--55737630	16	2.3	16	100	0	74	62	5	18	13	1.50
55745136--55745374	50	4.6	50	82	3	253	27	22	28	21	1.99
55745136--55745364	100	2.2	103	84	6	295	27	23	27	21	1.99
55751946--55752189	50	4.7	50	85	3	299	25	23	28	21	1.99
55751945--55752190	100	2.4	104	86	5	338	26	23	28	21	1.99
55765544--55765573	12	2.5	12	94	0	51	6	30	40	23	1.80
55770362--55770623	39	6.7	40	87	7	337	25	22	27	24	2.00
55779485--55779748	40	6.7	40	89	5	360	25	21	27	25	1.99
55779485--55779781	119	2.5	118	81	9	338	26	21	27	25	1.99
55795025--55795106	42	2.0	42	95	0	146	17	30	14	37	1.89
55801556--55801583	13	2.2	13	100	0	56	25	39	7	28	1.82
55801845--55801872	13	2.2	13	100	0	56	25	39	7	28	1.82
55801474--55802052	289	2.0	289	100	0	1158	27	21	15	35	1.94
55818659--55818684	13	2.0	13	100	0	52	30	0	30	38	1.58
55832369--55832413	22	2.0	22	87	8	65	26	2	20	51	1.59
55836303--55836383	40	2.0	41	85	2	110	44	25	16	13	1.84
55845166--55845192	14	1.9	14	100	0	54	59	3	0	37	1.15
55845325--55845380	29	1.9	29	85	7	78	51	14	7	26	1.67
55856044--55856240	50	3.8	50	82	4	205	26	22	28	22	1.99
55859296--55859371	36	2.1	36	97	0	143	27	15	7	48	1.73
55859332--55859547	59	3.7	59	100	0	432	30	18	6	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55859929--55860090	53	3.1	53	99	0	315	48	13	5	32	1.65
55860218--55860333	50	2.3	50	83	3	142	36	14	16	32	1.89
55871919--55872066	74	2.0	74	93	0	251	46	22	6	25	1.74
55874689--55874929	50	4.7	50	78	5	209	27	21	26	24	1.99
55878005--55878046	14	2.8	15	85	7	50	7	16	0	76	1.00
55881038--55881185	74	2.0	74	91	0	242	47	21	6	23	1.74
55890546--55890607	27	2.2	28	88	8	92	56	17	0	25	1.41
55890655--55890757	51	2.0	51	81	5	120	40	2	14	41	1.61
55891009--55891050	18	2.4	17	81	18	50	35	2	2	59	1.23
55912771--55912827	27	2.1	27	93	3	98	49	21	14	15	1.80
55915825--55915900	34	2.2	34	95	0	134	43	13	7	35	1.73
55917831--55917884	6	9.0	6	83	0	72	5	18	0	75	0.98
55917804--55917882	18	4.4	17	80	3	86	7	20	3	68	1.30
55920525--55920589	33	2.0	33	96	0	121	43	15	7	33	1.75
55929926--55930077	27	5.6	27	93	3	241	26	13	28	30	1.94
55929926--55930077	55	2.8	55	94	0	259	26	13	28	30	1.94
55942254--55942286	17	1.9	17	88	11	50	39	0	12	48	1.40
55954082--55954626	273	2.0	273	95	0	973	33	12	18	35	1.89
55957490--55957535	22	2.1	22	83	0	56	36	0	17	45	1.49
55958811--55958872	30	2.1	30	100	0	124	66	3	12	17	1.38
55958996--55959051	29	1.9	29	85	7	78	50	7	16	26	1.70
55968703--55968732	15	1.9	16	93	6	53	13	20	0	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55971940--55971997	23	2.5	22	83	10	64	55	6	0	37	1.27
55977602--55977864	40	6.6	40	88	3	325	26	27	20	24	1.99
55985555--55985817	40	6.6	40	88	3	325	26	27	20	24	1.99
55988864--55988906	19	2.3	18	88	8	59	39	2	0	58	1.11
56008867--56008912	20	2.3	20	84	0	56	36	15	19	28	1.92
56008875--56008920	20	2.3	20	88	0	74	30	13	23	32	1.93
56016591--56016739	41	3.6	41	93	0	244	31	19	24	24	1.98
56016714--56016764	26	2.0	26	92	0	84	23	19	31	25	1.98
56021410--56021545	61	2.3	58	81	12	154	39	2	5	51	1.41
56022999--56023084	9	9.4	9	80	7	84	41	25	8	24	1.82
56035011--56035050	18	2.3	18	91	4	64	35	5	32	27	1.79
56035017--56035061	18	2.5	18	85	0	54	33	4	33	28	1.77
56046262--56046315	20	2.7	20	97	0	99	20	22	3	53	1.61
56060092--56060133	7	5.6	7	86	13	57	78	0	4	16	0.91
56060092--56060133	16	2.8	16	92	7	70	78	0	4	16	0.91
56060641--56060683	17	2.4	18	76	11	52	69	2	4	23	1.18
56065505--56065584	34	2.4	34	91	4	128	23	30	11	35	1.90
56072464--56072920	228	2.0	228	99	0	905	28	23	18	29	1.98
56074131--56074195	21	3.0	21	70	12	60	53	3	1	41	1.25
56074212--56074262	20	2.7	19	81	6	59	56	3	0	39	1.18
56074203--56074305	50	2.0	49	87	7	143	59	2	0	37	1.13
56074501--56074531	15	2.1	15	100	0	62	38	6	41	12	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56078991--56079048	24	2.5	23	81	16	66	62	0	5	32	1.18
56079319--56079476	49	3.2	48	95	2	273	31	7	31	30	1.85
56079594--56079672	37	2.1	37	90	0	122	24	18	31	25	1.98
56083138--56083428	49	5.8	49	80	9	259	22	24	21	30	1.99
56090375--56090724	177	2.0	177	100	0	700	36	14	9	39	1.79
56090888--56091175	50	5.8	50	81	2	294	22	27	22	27	1.99
56090937--56091175	99	2.4	100	84	2	302	22	28	22	27	1.99
56090895--56091165	149	1.8	148	83	4	357	21	27	22	28	1.99
56097437--56097565	49	2.6	50	82	6	156	23	26	21	28	1.99
56097436--56097604	50	3.4	49	81	4	171	21	28	23	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187