genome.fa.s15.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  41  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12076023--12076092	6	12.4	5	76	20	59	22	22	0	54	1.45
12076024--12076093	17	4.1	16	80	12	68	24	21	0	54	1.45
12077393--12077423	16	2.0	15	93	6	53	58	6	0	35	1.24
12077437--12077466	3	10.0	3	100	0	60	66	0	0	33	0.92
12087642--12087790	75	2.0	75	97	0	280	33	16	7	42	1.75
12093558--12093599	22	1.9	22	85	0	57	26	0	7	66	1.17
12106907--12106941	17	2.1	17	88	0	52	42	0	5	51	1.25
12107874--12107987	48	2.4	48	100	0	228	42	10	7	40	1.66
12107968--12107999	9	3.6	9	95	0	55	43	21	9	25	1.82
12108110--12108153	18	2.4	18	88	0	61	15	4	40	38	1.68
12111033--12111057	5	5.0	5	100	0	50	0	40	0	60	0.97
12111883--12111999	53	2.2	54	93	3	202	39	9	10	41	1.71
12113201--12113238	16	2.3	17	86	4	51	34	2	5	57	1.35
12118049--12118101	21	2.7	20	82	8	56	39	20	0	39	1.53
12118163--12118241	16	4.9	16	77	13	83	6	15	6	72	1.26
12119086--12119138	20	2.6	20	80	11	63	33	1	0	64	1.05
12123820--12123846	13	2.1	13	100	0	54	40	14	7	37	1.74
12125360--12125402	22	2.0	22	82	13	54	37	11	2	48	1.52
12126367--12126416	19	2.5	20	71	12	50	38	2	0	60	1.09
12131607--12131643	18	2.1	18	90	5	58	35	24	0	40	1.55
12131672--12131710	5	8.0	5	97	2	71	41	0	0	58	0.98
12136641--12136738	49	2.0	50	85	2	135	44	7	16	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12136812--12136870	29	2.0	29	83	0	73	35	30	10	23	1.88
12143376--12143400	13	1.9	13	100	0	50	24	8	0	68	1.16
12142841--12143539	352	2.0	347	89	3	1062	23	14	6	56	1.60
12160131--12160175	17	2.7	16	83	10	54	57	2	0	40	1.11
12164637--12164828	50	3.9	49	82	4	215	28	21	29	20	1.98
12164638--12164821	100	1.8	99	84	1	251	28	21	29	20	1.98
12166784--12166839	21	2.5	22	86	13	71	66	0	33	0	0.92
12177044--12177118	40	1.9	40	86	10	111	65	0	1	33	1.01
12179477--12179506	9	3.3	9	95	0	51	70	6	0	23	1.11
12181477--12181528	23	2.3	22	83	3	59	73	5	0	21	1.04
12182861--12182918	22	2.6	22	83	0	80	36	17	3	43	1.66
12182861--12182918	5	10.8	5	75	14	53	36	17	3	43	1.66
12183209--12183233	4	6.2	4	100	0	50	28	24	24	24	2.00
12185615--12185830	111	1.9	111	92	0	360	30	8	27	33	1.86
12187494--12187755	101	2.6	101	84	3	334	30	14	25	29	1.95
12188912--12188963	19	2.9	17	81	10	59	40	11	15	32	1.83
12188922--12188987	22	3.1	21	89	10	100	40	9	16	33	1.80
12188922--12189004	22	3.9	21	84	10	98	38	8	16	36	1.79
12189394--12189440	23	2.0	23	84	8	60	38	4	0	57	1.18
12189533--12189608	36	2.1	36	80	11	84	38	9	1	51	1.42
12194536--12194580	19	2.4	19	96	3	83	48	8	13	28	1.72
12201597--12201671	29	2.6	29	76	2	71	54	4	1	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12202257--12202303	19	2.5	19	82	6	60	57	6	0	36	1.24
12204171--12204221	10	5.3	10	80	15	54	31	1	5	60	1.31
12204150--12204292	19	7.4	18	71	18	85	33	2	3	60	1.28
12206891--12206935	11	4.1	11	86	8	56	73	0	2	24	0.95
12207080--12207120	3	14.0	3	80	14	50	63	0	2	34	1.08
12207083--12207120	13	2.8	13	81	18	51	63	0	2	34	1.09
12207536--12207569	4	8.2	4	87	6	50	76	0	2	20	0.92
12208457--12208879	44	9.8	44	71	10	250	26	21	22	30	1.98
12208466--12208881	129	3.2	129	89	0	663	25	21	22	30	1.99
12208457--12208832	85	4.4	85	69	12	300	26	20	22	31	1.98
12208885--12209568	44	15.4	44	79	3	620	32	24	12	30	1.93
12208885--12209601	89	8.1	89	77	4	622	32	24	13	30	1.93
12208959--12209568	133	4.6	133	89	2	886	32	24	12	30	1.93
12210505--12210557	7	8.0	7	91	8	85	15	11	0	73	1.09
12210506--12210557	13	4.0	13	87	7	79	15	9	0	75	1.05
12210505--12210557	20	2.7	20	91	8	83	15	11	0	73	1.09
12212625--12212681	29	2.0	29	96	0	105	26	22	14	36	1.92
12215417--12215461	11	4.1	11	86	8	56	73	0	2	24	0.95
12215607--12215644	13	3.1	12	85	14	51	63	0	2	34	1.09
12216059--12216092	4	8.2	4	93	6	59	73	0	2	23	0.97
12216250--12216323	36	2.1	36	100	0	148	67	16	5	10	1.38
12220737--12220761	12	2.1	12	100	0	50	48	0	44	8	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12224731--12224814	33	2.8	29	79	13	105	25	14	10	50	1.75
12224736--12224802	33	2.0	33	91	0	107	25	11	10	52	1.70
12225482--12225518	14	2.7	14	84	16	51	29	13	10	45	1.77
12227046--12227191	64	2.3	64	85	2	186	36	23	21	19	1.95
12227041--12227246	32	6.4	32	72	8	141	36	20	21	21	1.95
12227052--12227225	64	2.7	63	80	7	156	37	23	20	18	1.94
12227051--12227229	96	1.9	96	83	6	238	37	22	20	18	1.94
12227300--12227356	27	2.1	27	84	12	73	33	21	24	21	1.97
12227434--12227507	24	3.2	23	77	9	71	47	21	5	25	1.72
12230289--12230378	37	2.4	38	85	7	114	32	23	3	41	1.71
12231059--12231089	12	2.6	12	94	0	53	0	25	3	70	1.02
12231623--12231686	3	20.7	3	80	6	74	57	0	3	39	1.14
12238398--12238449	21	2.5	21	90	0	77	32	19	7	40	1.80
12240698--12240736	12	3.2	12	79	13	53	33	0	0	66	0.92
12242276--12242319	21	2.3	18	84	11	52	36	4	2	56	1.32
12246539--12246954	208	2.0	208	98	0	805	36	16	13	33	1.88
12252370--12252414	5	9.0	5	90	0	63	35	22	4	37	1.74
12257496--12257526	16	1.9	16	93	0	53	83	0	12	3	0.75
12264634--12265079	218	2.0	219	90	1	698	34	17	18	29	1.94
12268497--12268533	3	12.3	3	94	0	65	0	35	0	64	0.94
12272637--12272668	14	2.3	14	100	0	64	6	15	46	31	1.71
12277763--12277794	14	2.3	14	100	0	64	6	15	46	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12278016--12278101	36	2.3	38	88	4	122	47	1	5	45	1.34
12277987--12278086	31	3.1	32	70	16	80	45	1	9	45	1.42
12278009--12278191	38	5.0	37	72	17	141	42	4	4	48	1.42
12278083--12278151	33	2.2	33	84	10	90	39	5	2	52	1.41
12279656--12279692	14	2.5	15	86	8	58	59	0	10	29	1.31
12280713--12280956	125	2.0	125	90	3	393	32	16	20	29	1.95
12280999--12281030	7	4.9	7	85	14	50	53	0	0	46	1.00
12281231--12281277	21	2.2	21	88	0	67	2	23	44	29	1.65
12281533--12281575	18	2.4	18	88	0	59	44	6	25	23	1.78
12283382--12283479	51	1.9	50	85	8	135	46	0	26	26	1.53
12286623--12286720	37	2.6	36	80	7	115	36	4	8	51	1.51
12297194--12297440	50	4.8	50	78	4	210	27	20	27	24	1.99
12298123--12298195	37	2.0	37	88	0	110	45	5	27	21	1.74
12303044--12303104	13	4.7	13	80	13	72	32	1	22	42	1.64
12305479--12305545	34	1.9	35	93	3	118	32	8	11	46	1.72
12306298--12306382	39	2.3	37	85	6	109	41	17	14	27	1.88
12306373--12306422	22	2.3	22	82	6	57	52	14	24	10	1.71
12307096--12307153	27	2.1	27	81	6	64	46	8	3	41	1.51
12309093--12309139	23	2.0	23	87	0	67	38	2	0	59	1.09
12309456--12309503	10	4.8	10	78	16	55	68	0	31	0	0.90
12309456--12309498	17	2.4	19	88	7	63	67	0	32	0	0.91
12309456--12309510	27	2.0	27	82	6	67	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12309866--12310250	104	3.7	103	83	8	363	28	0	17	53	1.49
12309967--12310251	110	2.7	104	90	5	412	30	0	17	51	1.50
12313589--12313624	3	12.0	3	100	0	72	66	0	0	33	0.92
12315198--12315517	130	2.5	131	74	6	326	29	24	15	30	1.96
12315453--12315733	44	6.3	44	80	3	240	27	24	15	33	1.95
12315524--12315757	45	5.2	45	75	5	188	27	23	18	29	1.98
12315749--12316166	132	3.2	132	89	2	608	27	24	19	28	1.99
12315965--12316147	44	4.2	44	65	10	104	25	25	21	27	2.00
12317516--12317556	21	2.0	20	90	4	64	14	19	0	65	1.26
12317525--12317555	14	2.3	13	94	5	53	12	16	0	70	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187