genome.fa.s15.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  136  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40740834--40740880	19	2.4	20	79	13	62	25	25	12	36	1.92
40742486--40742563	21	3.4	23	74	8	70	26	2	30	39	1.70
40742522--40742588	21	3.1	21	82	4	80	29	2	32	34	1.73
40744123--40744202	28	2.8	29	75	17	78	60	3	27	8	1.44
40744164--40744205	19	2.3	19	87	4	59	64	4	23	7	1.38
40754812--40754896	25	3.4	25	71	19	70	38	20	12	28	1.89
40754829--40755075	25	9.9	25	80	3	228	38	22	12	26	1.89
40754831--40755075	75	3.3	74	81	2	292	38	22	11	26	1.89
40760736--40760945	40	5.3	39	87	5	233	24	21	28	25	1.99
40760683--40760945	120	2.2	120	81	4	300	25	21	27	25	1.99
40760736--40760980	80	3.1	80	81	3	228	25	21	28	24	1.99
40768497--40768546	20	2.5	19	75	9	55	26	20	16	38	1.92
40770039--40770074	13	2.9	12	84	8	54	72	5	2	19	1.17
40774092--40774142	20	2.5	21	87	9	79	25	29	17	27	1.98
40774836--40774883	21	2.3	21	82	7	53	33	4	16	45	1.67
40776274--40776319	20	2.3	20	92	0	74	21	21	17	39	1.93
40790217--40790263	19	2.4	19	85	3	58	76	2	12	8	1.09
40790228--40790304	33	2.3	32	82	10	93	74	2	15	7	1.16
40795127--40795191	20	3.3	19	73	16	51	38	16	21	23	1.93
40795932--40795996	20	3.3	19	73	16	51	38	16	21	23	1.93
40804573--40804606	18	1.9	17	88	5	50	61	2	11	23	1.43
40805631--40805695	17	3.9	17	75	11	55	50	0	3	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40805741--40805774	16	2.1	16	88	0	50	32	2	8	55	1.45
40808380--40808404	9	2.8	9	100	0	50	36	24	12	28	1.91
40808665--40808841	27	6.6	27	84	0	210	27	20	8	43	1.80
40808665--40808841	81	2.2	81	85	0	237	27	20	8	43	1.80
40810530--40810556	4	6.8	4	100	0	54	22	0	0	77	0.76
40810524--40810576	26	2.0	26	85	7	72	22	1	1	73	1.03
40818975--40819093	50	2.3	52	88	2	170	32	17	12	36	1.88
40824211--40824342	50	2.6	51	83	6	169	34	14	12	38	1.84
40834679--40834720	18	2.3	19	87	4	59	73	7	9	9	1.24
40835328--40835369	20	2.0	20	86	4	57	26	21	11	40	1.88
40840297--40840360	32	2.0	32	96	0	119	17	9	26	46	1.78
40842803--40842863	10	6.1	10	74	12	54	32	13	24	29	1.93
40842804--40842864	20	3.0	20	83	9	79	32	13	26	27	1.93
40844931--40844965	18	1.9	18	88	11	54	22	20	0	57	1.41
40844953--40845057	6	17.2	6	66	9	52	7	17	3	71	1.25
40845004--40845057	6	9.2	6	75	4	56	3	14	5	75	1.12
40846135--40846160	13	2.0	13	100	0	52	15	0	7	76	0.99
40849241--40849281	11	3.6	12	90	9	68	12	0	7	80	0.90
40849495--40849554	29	2.1	29	87	0	84	31	0	28	40	1.57
40850796--40850853	10	5.7	10	76	11	64	29	27	13	29	1.94
40850796--40850856	20	3.0	20	83	9	79	27	26	13	32	1.93
40856535--40856620	20	4.5	19	74	14	61	72	1	22	4	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40856535--40856623	32	2.9	32	75	20	82	71	1	22	4	1.10
40856564--40856623	7	9.3	6	74	18	50	71	1	21	5	1.14
40860375--40860408	4	8.0	4	90	9	50	73	2	0	23	0.97
40861768--40861820	23	2.4	22	76	20	56	9	18	1	69	1.25
40866512--40866551	21	1.9	21	90	10	64	20	22	22	35	1.96
40867303--40867373	36	2.0	36	97	0	133	29	12	32	25	1.93
40867444--40867611	46	3.6	46	79	10	189	22	20	27	29	1.98
40867441--40867613	93	1.9	93	91	0	283	21	20	27	29	1.98
40869283--40869329	24	2.0	24	83	8	60	6	14	0	78	0.93
40869600--40869640	21	2.0	21	90	4	66	19	17	24	39	1.92
40869670--40869703	11	3.0	11	83	8	50	35	2	8	52	1.47
40873534--40873567	9	3.8	9	100	0	68	41	0	11	47	1.40
40873823--40873856	17	1.9	17	88	5	50	32	8	14	44	1.76
40873930--40873984	24	2.3	24	93	0	92	27	9	27	36	1.87
40874904--40874961	20	2.9	21	80	12	68	13	32	20	32	1.92
40877392--40877488	42	2.3	42	89	1	142	56	4	23	15	1.56
40877503--40877554	18	2.9	18	79	0	59	55	0	28	15	1.40
40877547--40877585	18	2.1	19	85	4	53	66	2	23	7	1.30
40880459--40880506	15	3.3	15	73	5	53	43	25	0	31	1.55
40885880--40885933	24	2.2	25	78	15	60	11	22	3	62	1.43
40888180--40888207	14	2.0	14	100	0	56	14	7	7	71	1.29
40888186--40888231	24	1.9	24	86	0	65	6	8	6	78	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40888210--40888264	15	3.8	15	76	16	53	14	9	7	69	1.36
40888211--40888264	28	1.9	28	84	0	72	14	9	7	68	1.38
40892557--40892610	24	2.2	25	78	15	60	11	22	3	62	1.43
40894858--40894886	15	1.9	15	100	0	58	13	6	6	72	1.26
40900436--40900607	40	4.3	40	88	2	222	25	21	27	25	1.99
40900436--40900607	79	2.2	79	84	3	220	25	21	27	25	1.99
40900463--40900640	79	2.2	80	80	3	191	25	21	28	24	1.99
40911507--40911626	28	4.3	28	84	4	161	29	23	25	22	1.99
40911507--40911626	56	2.1	56	87	3	179	29	23	25	22	1.99
40911722--40911775	26	2.1	26	86	6	74	31	18	27	22	1.97
40911915--40911993	27	3.0	26	83	9	88	22	16	24	36	1.94
40911947--40911998	27	1.9	27	96	0	95	17	17	26	38	1.92
40911949--40912010	27	2.3	27	88	0	88	20	17	19	41	1.90
40912019--40912237	27	8.1	27	79	8	196	17	17	19	45	1.86
40911946--40912077	67	2.0	67	85	5	178	19	17	18	44	1.87
40912019--40912237	81	2.7	81	87	2	289	17	17	19	45	1.86
40915042--40915066	9	2.8	9	100	0	50	80	8	0	12	0.92
40920594--40920650	17	3.7	17	68	31	56	22	33	26	17	1.96
40920590--40920648	27	2.2	27	96	0	109	20	35	27	16	1.94
40929983--40930158	94	1.9	94	97	0	334	47	4	9	38	1.56
40945925--40945960	14	2.8	12	84	15	54	19	11	0	69	1.18
40945932--40945967	14	2.6	14	95	0	63	25	11	0	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40945925--40945967	12	3.4	12	81	12	50	20	9	0	69	1.15
40952026--40952219	89	2.2	89	100	0	388	30	17	16	35	1.92
40956840--40957104	58	4.6	58	99	0	521	32	8	13	45	1.74
40958495--40958535	18	2.3	18	95	4	75	68	4	9	17	1.35
40960390--40960712	58	5.6	58	99	0	637	32	8	13	45	1.74
40963148--40963335	45	4.2	45	93	1	306	26	20	14	38	1.91
40968876--40968993	56	2.1	56	96	0	218	13	22	18	45	1.84
40969565--40969672	45	2.4	45	88	0	162	25	20	13	40	1.89
40969720--40969824	45	2.3	45	86	0	147	24	20	14	40	1.90
40969517--40969817	155	1.9	155	98	0	584	28	19	19	31	1.97
40970430--40970526	30	3.2	30	75	2	106	28	26	15	28	1.96
40973881--40973916	18	2.0	18	89	10	56	55	13	11	19	1.68
40978879--40978923	23	1.9	23	86	13	65	64	8	15	11	1.49
40988193--40988225	15	2.1	16	94	5	59	54	0	6	39	1.25
41007359--41007413	29	2.0	27	82	13	67	60	10	14	14	1.60
41011991--41012029	19	2.2	17	86	9	51	46	2	7	43	1.46
41014275--41014313	18	2.2	18	90	0	60	69	2	17	10	1.28
41019805--41019848	13	3.5	12	90	3	61	79	2	9	9	1.02
41019805--41019854	12	4.0	12	89	5	64	74	2	10	14	1.16
41026461--41026521	12	5.0	12	92	4	104	73	1	8	16	1.14
41038104--41038158	22	2.5	22	86	11	78	72	1	3	21	1.09
41040279--41040396	55	2.1	55	83	6	150	26	21	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41044884--41044914	15	2.1	15	100	0	62	35	19	0	45	1.51
41047158--41047184	11	2.5	11	100	0	54	22	7	18	51	1.70
41055916--41055970	20	2.8	20	85	0	74	30	16	27	25	1.96
41057303--41057451	78	1.9	78	95	0	271	40	24	20	15	1.91
41066550--41066615	23	2.9	23	95	0	114	33	27	4	34	1.77
41066972--41067030	21	2.8	22	68	21	63	59	3	13	23	1.50
41071759--41071810	23	2.3	22	75	21	54	9	23	1	65	1.32
41072665--41072779	55	2.1	55	100	0	230	32	13	15	39	1.86
41085122--41085202	19	4.2	19	93	3	135	37	11	17	34	1.85
41085125--41085219	19	4.8	21	90	3	94	34	11	17	35	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187