genome.fa.s15.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  155  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46596774--46596835	29	2.1	29	81	0	70	41	8	16	33	1.77
46599161--46599199	21	1.9	21	89	5	62	28	2	10	58	1.44
46601613--46601645	15	2.2	15	94	0	57	0	27	0	72	0.85
46610825--46610877	7	7.6	7	97	0	88	77	0	0	22	0.77
46614041--46614093	7	7.6	7	97	0	88	77	0	0	22	0.77
46634962--46635019	20	2.8	21	80	17	75	37	0	0	62	0.96
46634962--46635017	21	2.9	20	82	17	66	37	0	0	62	0.95
46634974--46635017	17	2.5	18	89	10	65	36	0	0	63	0.95
46635368--46635417	26	2.0	24	88	7	73	46	8	20	26	1.78
46643002--46643041	19	2.0	19	85	9	53	55	12	10	22	1.67
46649203--46649236	13	2.6	13	100	0	68	41	0	0	58	0.98
46664518--46664564	17	2.8	16	79	17	51	36	2	4	57	1.30
46665362--46665410	20	2.3	21	83	13	57	48	2	0	48	1.12
46667289--46667337	25	1.9	26	87	4	73	28	4	2	65	1.22
46671164--46672504	670	2.0	670	100	0	2682	28	25	17	28	1.98
46678771--46678802	10	3.2	10	95	0	55	46	21	9	21	1.79
46683180--46683204	12	2.1	12	100	0	50	44	8	16	32	1.76
46683420--46683473	10	5.7	9	76	10	54	27	1	0	70	0.98
46683420--46683473	19	2.8	19	86	10	74	27	1	0	70	0.98
46683419--46683473	20	2.8	20	91	2	85	27	1	0	70	0.97
46688376--46688416	12	3.2	13	90	10	66	75	0	24	0	0.80
46688378--46688415	18	2.1	19	85	14	53	78	0	21	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46688825--46688872	24	2.0	24	100	0	96	54	4	4	37	1.39
46710174--46710382	105	2.0	107	88	3	316	27	20	21	30	1.98
46713184--46713214	8	3.8	8	91	8	53	22	3	0	74	0.96
46713274--46713308	13	2.6	14	82	17	56	25	5	0	68	1.11
46713415--46713459	24	1.9	23	86	4	63	15	4	8	71	1.28
46716712--46716896	79	2.3	81	84	7	236	25	27	22	24	2.00
46716712--46716896	40	4.7	40	83	7	234	25	27	22	24	2.00
46724684--46724868	79	2.3	82	84	7	238	25	27	22	24	2.00
46724665--46724868	40	5.1	40	82	8	238	25	27	22	25	2.00
46728968--46729039	6	12.0	6	79	5	74	75	1	20	2	1.01
46728965--46729039	24	3.2	23	81	10	82	76	1	20	2	0.99
46728968--46729039	15	4.8	15	75	15	69	75	1	20	2	1.01
46729929--46730395	143	3.3	142	85	1	612	31	19	20	28	1.97
46730324--46730483	54	3.1	54	66	17	142	31	15	23	30	1.95
46730261--46730529	99	2.7	98	85	3	326	30	18	22	28	1.98
46730163--46730636	241	2.0	242	87	3	697	31	18	21	29	1.97
46730601--46730726	44	2.8	45	78	1	128	27	21	23	26	1.99
46729975--46730762	384	2.1	382	86	2	1082	30	18	21	29	1.97
46730360--46730771	142	2.9	141	83	4	501	30	18	21	29	1.97
46741796--46741835	21	1.9	21	89	0	62	40	20	0	40	1.52
46743012--46743049	7	5.3	7	82	17	51	15	0	0	84	0.63
46743012--46743069	5	11.8	5	81	7	66	15	3	1	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46745610--46745765	41	3.8	41	81	5	122	17	22	26	33	1.96
46746010--46746044	17	2.0	17	88	5	52	42	0	17	40	1.49
46747151--46747296	76	1.9	76	95	0	265	27	25	17	30	1.97
46749269--46749455	68	2.7	67	83	6	216	36	16	20	25	1.94
46750971--46751032	29	2.1	29	96	0	115	46	0	12	40	1.42
46754289--46754345	28	2.0	28	100	0	114	35	14	21	29	1.92
46756958--46757005	22	2.2	22	100	0	96	39	20	18	20	1.92
46762794--46762836	17	2.5	17	96	3	77	74	9	0	16	1.06
46764743--46764796	21	2.6	20	77	8	54	33	5	5	55	1.46
46765619--46765703	21	4.0	22	87	3	120	3	31	12	51	1.57
46770106--46770158	21	2.5	21	87	0	79	30	33	9	26	1.88
46770258--46770297	20	2.0	20	95	0	71	32	20	20	27	1.97
46773184--46773230	16	2.9	16	78	9	51	38	0	0	61	0.96
46781528--46781617	25	3.6	25	80	14	89	28	7	21	42	1.80
46781557--46781612	20	2.8	20	73	10	51	30	7	21	41	1.80
46781552--46781630	25	3.2	25	80	5	88	34	7	20	37	1.81
46786058--46786109	26	2.1	26	82	10	65	26	3	0	69	1.06
46786070--46786116	16	2.8	17	81	9	53	27	2	0	70	0.99
46786146--46786194	16	3.1	16	79	2	55	57	6	0	36	1.24
46794962--46795055	23	4.1	23	85	0	134	47	4	25	22	1.69
46799116--46799177	31	2.0	31	83	0	79	37	8	12	41	1.73
46802648--46802700	27	2.0	27	82	14	65	30	1	3	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46802656--46802697	21	2.0	22	90	4	68	28	2	4	64	1.26
46805230--46805259	12	2.5	12	88	0	51	46	30	0	23	1.52
46805376--46805418	20	2.2	20	95	0	77	41	16	4	37	1.69
46807910--46807950	21	2.0	21	95	0	73	34	4	4	56	1.42
46807964--46808006	14	2.9	15	75	6	52	27	0	2	69	1.00
46807956--46808020	29	2.3	29	78	2	78	32	1	4	61	1.26
46807974--46808015	21	2.0	22	90	4	68	28	2	4	64	1.26
46818144--46818338	97	2.0	97	95	0	354	20	18	25	35	1.95
46820001--46820596	44	13.6	45	71	14	313	29	20	22	27	1.99
46819871--46820644	44	17.8	44	69	11	228	29	20	22	27	1.98
46819860--46820689	218	3.8	218	91	0	1288	30	20	22	27	1.98
46820262--46820591	173	1.9	173	80	9	379	29	21	22	26	1.99
46819860--46820689	435	1.9	437	92	1	1405	30	20	22	27	1.98
46822111--46822151	21	2.0	21	90	0	64	31	4	4	58	1.40
46822166--46822208	14	2.9	15	75	6	52	27	0	2	69	1.00
46822158--46822222	29	2.3	29	78	2	78	32	1	4	61	1.26
46822176--46822217	21	2.0	22	90	4	68	28	2	4	64	1.26
46824747--46824776	12	2.5	12	88	0	51	46	30	0	23	1.52
46824893--46824935	20	2.2	20	95	0	77	41	16	4	37	1.69
46827273--46827336	31	2.1	31	82	5	76	37	15	20	26	1.92
46828240--46828275	15	2.4	15	100	0	72	30	0	36	33	1.58
46831560--46831600	20	2.2	18	87	12	57	36	24	2	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46838900--46839051	37	3.9	37	80	14	157	26	21	15	35	1.94
46838968--46839138	46	3.6	46	84	9	225	27	22	14	35	1.93
46839011--46839124	52	2.2	52	90	4	176	27	22	13	36	1.91
46849113--46849144	14	2.3	14	94	0	55	75	15	9	0	1.05
46857758--46857889	40	3.3	40	70	9	101	25	13	23	37	1.92
46858059--46858101	22	2.0	22	90	4	70	44	6	25	23	1.78
46858101--46858132	15	2.1	16	88	11	50	34	0	21	43	1.53
46858840--46858921	28	2.9	28	90	0	119	10	21	37	29	1.88
46864893--46864923	15	2.1	15	93	0	53	51	0	6	41	1.27
46876731--46876773	3	14.3	3	95	0	77	0	30	0	69	0.88
46892364--46892403	17	2.4	17	83	4	55	42	27	15	15	1.86
46894185--46894211	14	1.9	14	100	0	54	44	0	0	55	0.99
46894326--46894403	9	8.3	9	73	21	63	33	2	1	62	1.17
46894332--46894392	20	3.1	20	75	13	56	31	3	0	65	1.09
46894349--46894403	20	2.7	20	82	2	56	30	1	1	65	1.13
46914767--46914942	92	1.9	91	96	2	318	32	14	23	28	1.94
46916055--46916099	24	1.9	24	86	13	67	28	11	15	44	1.81
46929266--46929329	21	3.0	21	84	4	85	46	20	20	12	1.82
46938190--46938286	33	2.9	34	81	6	119	23	43	5	27	1.75
46938156--46938286	66	2.0	66	82	8	160	25	40	4	29	1.75
46960472--46960498	6	4.5	6	100	0	54	44	37	0	18	1.50
46962579--46962625	22	2.2	23	85	11	64	68	6	2	23	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46964649--46964710	6	11.0	6	74	19	62	77	4	0	17	0.94
46964649--46964710	23	2.8	23	79	13	67	77	4	0	17	0.94
46964637--46964710	17	4.5	16	85	6	94	78	5	1	14	1.00
46964637--46964710	33	2.2	33	85	4	96	78	5	1	14	1.00
46964656--46964710	27	2.0	26	86	13	76	78	3	0	18	0.90
46969725--46969798	18	3.7	18	70	27	60	48	0	25	25	1.51
46969710--46969793	43	2.0	43	90	4	134	50	1	25	23	1.57
46970777--46970843	30	2.2	30	91	0	107	19	26	37	16	1.93
46971994--46972032	14	2.7	15	84	8	53	48	0	20	30	1.50
46972087--46972155	28	2.5	28	87	0	93	30	13	26	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187