genome.fa.s15.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  22  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6327470--6327528	22	2.7	22	83	0	73	66	6	8	18	1.41
6328660--6328950	126	2.3	126	91	2	469	32	19	20	27	1.97
6332272--6332332	21	2.9	21	85	4	70	11	21	37	29	1.88
6332579--6332616	18	2.1	18	90	0	58	42	10	26	21	1.85
6333271--6333296	7	3.7	7	100	0	52	57	15	0	26	1.38
6335211--6335452	101	2.4	100	83	2	288	30	27	16	25	1.97
6335206--6335486	101	2.8	99	75	9	255	30	27	15	26	1.96
6337430--6337485	20	2.5	23	80	11	64	46	0	33	19	1.50
6337436--6337486	11	4.6	11	88	7	59	47	0	33	19	1.50
6338282--6338311	7	4.3	7	100	0	60	13	43	13	30	1.82
6338643--6338716	9	8.4	8	73	18	51	17	5	1	75	1.06
6338686--6338716	16	2.0	16	93	6	55	19	0	0	80	0.71
6338830--6338944	57	2.1	54	91	4	185	24	17	9	48	1.76
6341861--6341898	16	2.4	16	95	0	67	57	2	0	39	1.12
6342154--6342295	50	2.8	50	81	8	153	38	11	15	33	1.84
6342894--6342934	21	2.0	21	100	0	82	43	4	9	41	1.59
6343197--6343252	20	2.7	21	81	10	62	0	32	0	67	0.91
6343318--6343366	20	2.5	20	86	6	64	34	18	36	10	1.85
6352954--6353007	20	2.7	21	74	8	58	38	18	9	33	1.83
6369078--6369103	13	2.0	13	100	0	52	61	0	15	23	1.33
6376147--6376188	20	2.0	22	90	9	70	76	4	7	11	1.15
6376147--6376188	11	4.0	11	84	12	61	76	4	7	11	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6377092--6377144	23	2.4	22	76	20	56	9	18	1	69	1.25
6379258--6379376	59	2.0	60	95	1	213	31	26	15	26	1.96
6382731--6382777	23	2.1	23	84	7	62	51	12	4	31	1.59
6386017--6386060	20	2.2	20	88	8	63	4	15	4	75	1.14
6389249--6389278	16	1.9	15	93	6	51	43	33	3	20	1.68
6389717--6389748	15	2.1	16	94	5	57	6	21	0	71	1.07
6396625--6396651	13	2.1	13	100	0	54	29	11	29	29	1.91
6397646--6397700	21	2.6	22	82	8	78	27	9	36	27	1.87
6398823--6398869	20	2.3	20	81	0	58	29	34	12	23	1.92
6398995--6399125	66	2.0	66	96	0	244	37	6	8	48	1.59
6402118--6402178	25	2.5	26	75	21	69	59	1	34	4	1.29
6403726--6403750	9	2.8	9	100	0	50	28	0	12	60	1.32
6408938--6409011	21	3.6	21	76	5	62	66	0	24	9	1.21
6410875--6410934	23	2.6	23	100	0	120	51	10	6	31	1.61
6410898--6411022	66	1.9	66	98	0	241	48	17	4	29	1.65
6413554--6413673	60	2.0	60	98	0	231	30	20	24	25	1.98
6415572--6415628	10	5.6	10	76	12	53	29	14	26	29	1.95
6415569--6415629	20	3.0	20	83	9	79	32	13	26	27	1.93
6417609--6417667	30	1.9	31	83	10	77	23	30	15	30	1.95
6417608--6417693	31	2.8	31	78	16	81	27	27	12	31	1.93
6418874--6418917	22	2.0	22	95	0	79	25	36	4	34	1.76
6433631--6433676	9	5.0	9	89	2	65	41	13	13	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6433751--6433806	29	1.9	29	96	0	103	37	5	0	57	1.22
6435094--6435285	97	2.0	97	95	0	348	11	14	18	55	1.68
6438318--6438455	43	3.3	43	73	11	124	28	25	16	29	1.97
6438606--6439031	32	13.3	32	83	3	457	40	16	10	32	1.83
6438608--6439031	96	4.4	96	86	0	528	40	16	10	32	1.83
6445632--6445940	42	7.3	41	83	5	320	30	22	20	26	1.98
6446329--6446397	21	3.3	21	91	0	93	4	39	20	36	1.72
6451035--6451088	7	7.1	7	87	8	63	27	1	16	53	1.53
6451094--6451836	18	41.3	18	68	10	198	36	3	12	47	1.58
6451111--6451836	27	25.6	27	80	13	752	36	3	12	47	1.57
6451103--6451836	90	8.5	90	82	11	732	36	3	12	47	1.57
6454929--6454967	21	1.9	20	89	5	60	43	35	0	20	1.52
6461712--6461870	46	3.5	46	88	1	221	33	17	21	27	1.96
6463823--6463882	30	2.0	30	100	0	120	33	16	20	30	1.94
6464413--6464441	13	2.2	13	100	0	58	48	0	20	31	1.50
6467218--6467274	19	3.1	19	82	10	73	38	0	5	56	1.22
6476761--6476820	9	6.7	9	76	12	52	63	0	0	36	0.95
6476771--6476816	24	1.9	24	86	8	67	60	0	0	39	0.97
6476771--6476820	26	2.0	24	88	7	73	60	0	0	40	0.97
6483958--6483992	17	2.2	16	90	10	54	37	14	2	45	1.59
6494976--6495021	17	2.8	18	84	15	64	28	41	30	0	1.56
6506260--6506429	89	1.9	89	83	4	218	35	20	8	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6506557--6506608	19	2.8	18	88	5	77	73	1	1	23	1.04
6506573--6506721	48	3.2	47	79	8	144	59	2	7	30	1.36
6506916--6508580	831	2.0	832	99	0	3262	41	15	14	29	1.86
6509298--6509393	19	4.7	21	79	10	74	40	15	6	37	1.73
6509298--6509355	22	2.6	22	81	7	64	41	17	5	36	1.72
6509334--6509406	19	3.8	19	90	0	119	35	15	10	38	1.82
6509623--6509666	19	2.3	20	80	11	56	50	0	0	50	1.00
6509574--6509647	37	2.0	37	81	5	87	31	2	2	63	1.22
6509638--6509683	18	2.4	19	82	10	58	45	0	0	54	0.99
6509638--6509715	19	4.2	18	71	24	56	42	2	0	55	1.13
6509717--6509932	91	2.4	88	81	3	252	34	7	22	35	1.83
6509955--6510022	31	2.4	29	83	11	79	69	2	1	26	1.12
6511612--6511667	21	2.7	21	94	0	94	25	26	14	33	1.94
6511723--6511757	18	1.9	18	88	0	52	45	17	5	31	1.71
6512004--6512061	19	2.7	22	84	10	68	36	8	17	37	1.80
6514386--6514449	22	2.9	22	75	9	76	39	20	25	15	1.92
6514386--6514470	44	1.9	44	83	9	111	38	20	27	14	1.90
6517399--6517634	101	2.3	101	88	2	348	30	15	25	29	1.96
6521044--6521088	23	2.0	23	90	0	72	55	4	8	31	1.51
6521117--6521144	14	2.0	14	100	0	56	42	0	7	50	1.30
6522644--6522772	43	3.0	43	79	13	140	20	17	28	33	1.95
6525656--6525934	149	1.9	152	82	9	367	48	5	6	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6540256--6540325	28	2.5	27	81	2	68	28	28	31	11	1.92
6548886--6548938	3	17.7	3	92	0	88	66	0	30	3	1.10
6558278--6558313	9	3.9	9	96	3	63	86	0	0	13	0.58
6559155--6559226	22	3.3	22	94	3	119	27	34	1	36	1.66
6559260--6559325	30	2.2	31	97	2	125	37	0	0	62	0.96
6560906--6560958	21	2.5	20	76	11	52	52	5	5	35	1.49
6560942--6561580	29	21.9	29	88	6	907	45	24	0	29	1.60
6564692--6565150	125	3.7	125	96	1	825	32	21	16	30	1.95
6571151--6571193	11	3.8	11	80	17	52	30	2	2	65	1.18
6571154--6571197	23	1.9	23	90	0	70	31	2	4	61	1.28
6578619--6578653	13	2.7	13	100	0	70	54	0	0	45	0.99
6585206--6585240	13	2.7	13	100	0	70	54	0	0	45	0.99
6590005--6590089	41	2.1	41	82	6	102	27	11	24	36	1.90
6591096--6591120	13	1.9	13	100	0	50	88	0	12	0	0.53
6593195--6593222	5	5.6	5	100	0	56	39	0	0	60	0.97
6594225--6594256	17	1.9	16	93	6	55	43	31	3	21	1.68
6594288--6594324	16	2.3	16	95	0	65	43	27	0	29	1.55
6598952--6598990	20	1.9	19	85	10	51	74	15	2	7	1.15
6599169--6599379	117	1.8	117	89	0	332	44	23	9	22	1.83
6599566--6599602	16	2.3	16	95	0	65	29	0	27	43	1.55
6599594--6599642	20	2.5	20	93	0	80	40	4	16	38	1.67
6602362--6602433	34	2.1	34	97	0	135	26	18	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6605412--6605634	101	2.2	101	85	0	293	34	16	21	27	1.94
6606536--6606566	12	2.6	12	100	0	62	19	16	48	16	1.81
6630201--6630238	17	2.2	17	86	9	51	31	0	2	65	1.06
6633542--6633609	32	2.2	32	91	2	111	30	20	16	32	1.94
6636360--6636517	43	3.7	43	85	2	183	31	24	16	28	1.96
6646080--6646220	71	2.0	71	98	0	273	32	20	17	29	1.96
6647687--6647726	5	7.4	5	94	5	53	42	0	20	37	1.52
6647687--6647726	12	3.6	11	90	9	64	42	0	20	37	1.52
6649997--6650158	44	3.5	44	85	11	207	30	15	23	30	1.95
6650002--6650165	51	3.4	49	87	11	248	31	14	23	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187