genome.fa.s15.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  32  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9198610--9198646	16	2.3	16	85	0	56	78	0	10	10	0.97
9199822--9200195	46	8.1	46	90	0	568	24	15	31	29	1.95
9200180--9200710	132	4.1	132	90	3	833	30	18	24	26	1.98
9200180--9200710	257	2.0	259	90	2	832	30	18	24	26	1.98
9202194--9202221	7	4.0	7	100	0	56	28	0	0	71	0.86
9206532--9206566	16	2.2	16	100	0	70	22	11	17	48	1.79
9209953--9210083	46	2.9	45	78	6	149	41	18	23	16	1.89
9210075--9210107	13	2.4	14	90	10	50	75	0	0	24	0.80
9211480--9211847	108	3.5	107	69	12	335	32	16	24	26	1.96
9211437--9211946	210	2.4	210	90	1	783	33	17	22	26	1.96
9211964--9212413	44	10.4	44	72	10	281	31	19	20	28	1.97
9211965--9212207	128	1.9	128	81	9	298	31	20	20	27	1.97
9211963--9212407	173	2.6	171	84	3	597	31	19	20	28	1.97
9212137--9212375	129	1.9	129	84	1	327	30	17	21	30	1.97
9214021--9214054	3	11.3	3	100	0	68	32	0	0	67	0.91
9214116--9214146	3	10.3	3	100	0	62	32	0	0	67	0.91
9214024--9214235	92	2.3	92	99	0	415	24	8	4	62	1.42
9214208--9214235	3	9.3	3	100	0	56	32	0	0	67	0.91
9216995--9217139	52	3.0	48	77	10	152	29	28	16	25	1.97
9219913--9219953	20	2.0	20	85	0	55	43	7	0	48	1.30
9225039--9225079	20	2.0	20	90	0	64	43	4	0	51	1.23
9228839--9228871	5	6.6	5	100	0	66	21	0	60	18	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9247077--9247107	4	7.8	4	92	0	53	51	19	0	29	1.47
9249583--9249645	18	3.4	19	81	14	78	61	4	0	33	1.17
9249768--9249798	3	10.3	3	100	0	62	0	32	0	67	0.91
9251703--9251728	2	13.0	2	100	0	52	50	0	0	50	1.00
9254690--9254897	91	2.3	90	81	11	253	27	25	14	32	1.95
9255559--9255612	23	2.3	23	84	9	65	42	5	7	44	1.55
9257658--9257709	3	17.3	3	80	7	52	57	0	1	40	1.10
9257661--9257713	12	4.3	12	85	7	63	56	0	1	41	1.10
9259441--9259822	50	7.6	51	70	5	235	24	21	22	31	1.98
9259392--9259834	100	4.4	100	87	2	572	24	20	22	32	1.98
9260721--9260920	108	1.9	107	86	5	287	47	10	16	26	1.78
9272427--9272481	3	18.3	3	81	7	67	60	1	1	36	1.18
9283020--9283234	9	22.3	9	66	17	69	44	2	4	49	1.34
9283198--9283245	20	2.3	21	78	7	62	43	2	2	52	1.24
9288343--9288372	7	4.3	7	91	0	51	46	0	0	53	1.00
9307597--9307661	32	2.1	32	97	2	123	30	9	12	47	1.72
9312899--9312992	37	2.6	37	87	1	145	40	32	10	15	1.82
9314677--9314809	21	6.3	21	79	3	124	45	17	21	16	1.86
9314677--9314806	42	3.1	42	82	2	145	43	17	21	16	1.87
9314682--9314801	63	1.9	63	87	3	179	45	17	20	16	1.86
9322113--9322283	42	4.1	40	77	13	148	49	16	15	18	1.80
9322111--9322233	21	5.9	21	80	5	115	49	16	17	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9322121--9322287	21	8.0	21	75	7	108	48	16	16	19	1.81
9328023--9328150	68	1.9	68	85	3	177	28	26	21	23	1.99
9328161--9328187	13	2.1	13	100	0	54	37	11	22	29	1.89
9328174--9328514	69	5.0	68	76	8	278	31	24	19	24	1.98
9331497--9331694	102	1.9	103	81	3	236	28	17	23	30	1.97
9333364--9333399	18	2.0	18	88	0	54	13	22	8	55	1.65
9342177--9342233	17	3.1	18	80	17	64	54	0	24	21	1.45
9342175--9342233	16	3.3	18	79	15	68	52	0	25	22	1.47
9342582--9342618	9	4.1	9	89	0	56	35	8	8	48	1.62
9342899--9342933	7	5.1	7	96	3	63	28	14	40	17	1.88
9356255--9356291	15	2.5	15	95	0	65	45	16	24	13	1.83
9358411--9358487	35	2.2	35	97	0	145	44	14	5	36	1.67
9376365--9376458	25	3.6	25	74	14	84	22	22	22	32	1.98
9377367--9377447	40	2.0	40	100	0	162	17	34	27	20	1.95
9385201--9385305	41	2.6	41	90	0	156	35	27	19	18	1.94
9391300--9391384	30	2.7	32	81	5	93	8	35	15	41	1.77
9392488--9392519	16	2.0	16	93	0	55	40	6	12	40	1.68
9394599--9394654	25	2.3	24	81	6	60	66	7	1	25	1.27
9398221--9398255	16	2.1	17	94	5	63	85	2	0	11	0.69
9400729--9400855	64	2.0	64	100	0	254	40	11	14	33	1.81
9401444--9401491	23	2.1	23	100	0	96	20	8	31	39	1.82
9408418--9408581	79	2.1	79	96	0	301	18	26	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9408601--9408697	49	2.0	48	91	2	158	42	22	15	19	1.89
9416202--9416230	6	4.8	6	100	0	58	34	13	51	0	1.42
9425197--9425240	20	2.2	20	91	0	70	70	9	9	11	1.34
9425203--9425241	20	2.0	20	100	0	78	66	10	7	15	1.43
9425209--9425295	34	2.7	32	79	13	104	66	10	8	14	1.43
9426182--9426216	14	2.4	14	90	4	52	71	0	14	14	1.15
9427525--9428024	128	3.9	128	93	0	831	30	20	25	23	1.98
9427971--9428326	169	2.1	171	87	5	506	29	18	23	28	1.98
9428213--9428755	218	2.5	216	83	4	673	28	18	24	29	1.98
9428404--9428511	44	2.5	44	83	6	130	26	18	22	32	1.97
9428605--9428744	44	3.2	43	72	8	111	32	17	22	27	1.96
9432369--9432404	18	2.1	16	90	10	54	61	2	5	30	1.33
9440752--9440966	109	2.0	109	85	1	297	27	24	26	21	1.99
9450392--9450449	30	1.9	30	96	0	107	39	6	5	48	1.52
9460479--9460673	98	2.0	98	94	0	345	28	10	24	36	1.89
9467050--9467299	83	3.0	84	92	1	421	24	5	22	47	1.73
9471708--9471852	60	2.4	59	83	3	191	39	5	16	38	1.72
9472096--9472146	17	3.0	17	71	21	52	52	0	1	45	1.12
9472867--9472935	9	7.7	9	86	0	93	43	21	10	24	1.83
9472867--9472935	27	2.6	27	93	4	113	43	21	10	24	1.83
9475646--9475701	28	2.0	28	96	0	103	10	21	23	44	1.83
9485591--9485665	29	2.6	28	81	8	87	20	14	17	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9489432--9489500	21	3.3	20	91	4	93	33	18	44	2	1.65
9489464--9489512	12	4.3	12	75	15	59	36	20	42	0	1.52
9489946--9490112	43	3.9	43	85	4	205	24	22	21	31	1.98
9489947--9490111	85	1.9	85	86	4	235	24	21	21	31	1.98
9490744--9490783	19	2.0	19	85	9	53	65	5	0	30	1.14
9497978--9498032	27	2.0	27	92	0	92	54	12	12	20	1.70
9499715--9499769	21	2.8	20	84	13	69	41	0	1	56	1.10
9499715--9499772	20	2.9	20	82	10	66	43	0	1	55	1.10
9499923--9499947	12	2.1	12	100	0	50	44	0	0	56	0.99
9499991--9500032	20	2.1	20	90	0	66	57	0	7	35	1.26
9502706--9502811	30	3.6	30	80	2	124	24	25	22	27	2.00
9507039--9507223	86	2.2	85	93	1	316	41	24	3	29	1.72
9507375--9507423	21	2.3	22	82	13	66	48	0	2	48	1.12
9507386--9507444	31	2.0	29	90	6	91	49	1	1	47	1.21
9507556--9507630	9	7.8	9	73	18	53	61	1	0	37	1.05
9507561--9507620	32	2.0	30	90	9	95	63	1	0	35	1.05
9507687--9507733	20	2.3	20	92	7	78	63	0	0	36	0.94
9507444--9507730	117	2.5	114	75	17	277	54	2	3	39	1.31
9507702--9507768	35	2.0	33	88	11	102	59	0	0	40	0.97
9507692--9507776	27	3.1	27	75	21	97	57	0	0	42	0.98
9507822--9507867	24	1.9	24	82	8	58	73	4	4	17	1.15
9508836--9508868	16	2.0	17	88	5	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9509669--9509714	16	2.9	15	81	9	56	50	0	8	41	1.33
9509684--9509758	36	2.0	38	85	10	102	48	0	8	44	1.32
9519833--9519862	15	2.0	15	93	0	51	50	0	10	40	1.36
9526620--9526657	20	1.9	19	89	5	58	2	18	2	76	1.02
9529592--9529625	18	1.9	17	88	5	50	47	2	0	50	1.16
9537798--9537823	8	3.2	8	100	0	52	34	0	15	50	1.45
9542376--9542408	16	2.1	16	88	5	50	48	15	9	27	1.74
9558069--9558282	37	5.8	37	97	0	392	39	13	20	27	1.89
9558244--9558367	46	2.8	46	91	3	200	33	16	22	28	1.95
9562053--9562077	13	1.9	13	100	0	50	8	0	24	68	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187