genome.fa.s15.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  113  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33324703--33325280	289	2.0	290	96	0	1059	25	11	28	34	1.90
33325556--33325667	55	2.0	55	100	0	224	41	10	21	26	1.86
33325913--33326096	79	2.3	81	83	11	231	25	21	27	25	2.00
33325913--33326096	40	4.7	40	82	8	209	25	21	27	25	2.00
33325942--33326129	79	2.4	77	79	12	202	28	20	26	25	1.99
33337764--33337791	12	2.3	12	100	0	56	57	32	0	10	1.33
33341941--33342126	51	3.8	51	75	12	199	33	18	18	29	1.95
33341988--33342155	44	3.7	44	72	13	149	32	19	18	29	1.96
33341896--33342155	95	2.7	95	86	1	360	33	19	19	28	1.96
33342298--33342341	14	3.1	14	83	0	61	75	11	0	13	1.06
33342798--33342838	1	41.0	1	100	0	82	0	0	0	100	0.00
33343523--33343561	20	2.0	20	89	0	60	20	25	15	38	1.92
33346932--33347061	67	1.9	68	90	1	208	29	24	15	30	1.96
33347699--33347751	4	13.8	4	82	7	65	24	5	0	69	1.09
33347696--33347734	11	3.5	11	96	3	69	25	2	0	71	0.98
33347788--33347827	19	2.2	19	86	4	55	22	5	7	65	1.38
33348956--33348988	16	2.1	16	100	0	66	30	12	24	33	1.91
33357189--33357240	6	8.5	6	93	2	86	19	0	1	78	0.84
33362965--33362999	18	2.0	17	88	5	52	45	0	0	54	0.99
33362858--33363261	120	3.4	120	94	1	668	44	1	5	48	1.36
33363002--33363199	66	3.2	66	68	21	208	42	3	6	47	1.44
33363085--33363119	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33363024--33363210	61	3.1	61	68	11	195	43	3	6	47	1.45
33363205--33363239	18	2.0	17	88	5	52	45	0	0	54	0.99
33363205--33363259	15	3.4	16	80	16	53	47	0	1	50	1.11
33363475--33363542	16	4.2	16	96	0	127	38	35	0	26	1.57
33372262--33372358	3	32.0	3	77	13	92	60	2	5	31	1.30
33374948--33375026	38	2.1	35	84	9	95	35	3	2	58	1.30
33383000--33383227	49	4.6	50	80	2	244	26	17	19	36	1.94
33383000--33383245	99	2.5	99	81	0	294	26	17	19	36	1.94
33387938--33387998	22	2.8	22	80	2	61	68	6	6	18	1.33
33388194--33388225	16	2.0	16	93	0	55	50	6	21	21	1.71
33389063--33389147	25	3.1	27	85	10	120	44	21	4	29	1.72
33389375--33389407	6	5.7	6	92	7	50	0	3	9	87	0.63
33389375--33389407	11	2.8	12	90	4	50	0	3	9	87	0.63
33389375--33389408	17	2.0	17	88	0	50	0	2	11	85	0.71
33389599--33389842	44	5.6	44	80	9	241	25	27	16	31	1.96
33389982--33391304	205	6.5	203	89	2	1886	29	21	17	30	1.96
33389982--33391304	409	3.2	408	89	3	2000	29	21	17	30	1.96
33399269--33399298	15	2.1	15	93	6	53	6	36	0	56	1.26
33399342--33399391	15	3.5	14	79	15	50	42	8	24	26	1.82
33402761--33402871	3	36.7	3	70	15	59	56	1	7	34	1.37
33402871--33402902	16	2.0	16	93	0	55	50	6	21	21	1.71
33403006--33403048	16	2.8	15	86	6	59	62	0	6	30	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33403244--33403278	10	3.6	10	92	3	54	65	0	0	34	0.93
33403211--33403286	26	2.9	26	79	11	68	57	3	2	35	1.31
33403733--33403816	26	3.2	25	85	10	105	42	21	4	30	1.73
33407028--33407091	32	2.0	32	87	0	92	21	12	37	28	1.90
33407445--33407502	13	3.6	17	73	17	61	13	27	44	13	1.82
33407445--33407483	17	2.2	17	90	4	60	12	30	46	10	1.75
33408019--33408067	18	2.7	18	77	0	62	34	8	16	40	1.78
33409101--33409148	20	2.4	20	85	0	60	29	12	18	39	1.88
33409908--33409964	25	2.2	26	81	9	64	50	5	0	43	1.24
33410376--33410524	3	49.7	3	100	0	298	32	0	0	67	0.91
33410962--33411042	31	2.6	31	70	1	74	40	6	9	43	1.63
33415046--33415093	23	2.0	24	84	4	62	50	14	8	27	1.71
33415397--33415504	26	4.2	26	93	0	189	32	7	24	36	1.83
33419192--33419300	56	1.9	56	90	3	175	29	11	28	30	1.92
33420990--33421102	59	1.9	59	92	0	190	27	15	32	23	1.95
33422628--33422735	26	4.2	26	92	0	180	32	8	23	36	1.84
33430517--33430632	58	2.0	58	100	0	232	31	20	22	25	1.98
33445143--33445404	23	11.4	23	78	9	259	36	24	6	32	1.80
33445146--33445433	23	12.6	22	75	8	175	37	25	6	31	1.81
33445774--33445823	12	4.2	12	73	14	50	42	24	0	34	1.55
33447525--33447555	15	2.1	15	100	0	62	51	12	29	6	1.65
33448781--33448916	7	19.1	7	71	13	64	38	39	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33448998--33449032	7	5.0	7	89	0	52	51	31	0	17	1.45
33448926--33449033	46	2.3	47	85	4	157	44	26	1	26	1.65
33451700--33451897	43	4.6	43	76	9	190	29	27	15	27	1.96
33458249--33458446	43	4.6	43	77	9	181	30	27	15	27	1.96
33460294--33460321	14	2.0	14	100	0	56	21	7	28	42	1.79
33468236--33468276	20	2.0	20	90	0	64	36	21	12	29	1.90
33480084--33481148	134	7.9	134	98	0	2015	27	20	22	29	1.98
33481148--33481269	40	2.9	41	80	8	149	35	23	18	22	1.96
33481237--33481919	130	5.3	130	96	1	1210	28	19	25	26	1.99
33481325--33481883	43	12.9	43	63	4	190	28	19	25	26	1.99
33484734--33484837	31	3.3	31	69	12	86	45	15	9	29	1.78
33484658--33484877	63	3.2	69	79	9	254	43	15	10	30	1.80
33484990--33485107	41	2.9	41	87	0	146	31	24	16	27	1.97
33493754--33493862	17	5.9	17	71	18	60	30	2	3	63	1.26
33493756--33493862	18	5.8	17	73	18	65	29	2	3	63	1.26
33493860--33493922	33	1.9	33	83	0	81	30	9	1	58	1.39
33493938--33493995	25	2.2	27	81	6	66	34	3	0	62	1.12
33494691--33494807	40	3.0	38	71	5	99	34	22	21	22	1.97
33497087--33497123	19	1.9	19	100	0	74	67	21	5	5	1.31
33497087--33497128	19	2.3	18	92	8	68	69	19	4	7	1.31
33497105--33497552	128	3.5	128	98	0	842	41	16	9	32	1.80
33500690--33500765	37	2.1	37	100	0	152	25	18	13	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33501164--33501431	43	6.2	43	89	0	392	20	18	30	29	1.97
33505661--33505734	31	2.5	31	84	4	89	40	12	12	35	1.80
33506390--33506441	3	17.0	3	77	18	54	32	1	3	61	1.25
33506390--33506426	14	2.6	14	91	0	56	29	2	5	62	1.31
33506362--33506446	22	3.9	22	76	13	77	31	3	4	60	1.35
33506390--33506437	11	3.8	13	84	15	50	33	2	4	60	1.27
33506387--33506443	8	6.8	8	78	21	55	33	1	3	61	1.23
33510554--33510619	25	2.6	25	85	9	80	19	16	6	57	1.60
33511401--33511465	16	4.3	15	85	12	80	75	9	1	13	1.11
33511399--33511451	15	3.4	14	83	16	61	73	9	1	15	1.17
33512122--33512154	16	2.1	16	100	0	66	51	6	24	18	1.68
33513054--33513310	50	5.1	50	64	3	158	28	22	26	23	1.99
33513049--33513310	100	2.6	100	93	0	452	29	22	25	23	1.99
33513049--33513351	100	3.0	98	89	2	437	29	22	24	24	1.99
33513361--33513656	44	6.9	43	70	13	182	29	18	24	27	1.98
33514835--33514889	3	18.0	3	78	17	60	32	1	3	61	1.24
33514835--33514871	14	2.6	14	91	0	56	29	2	5	62	1.31
33514807--33514888	22	3.8	22	78	12	80	31	2	4	60	1.30
33514835--33514889	11	4.5	12	84	15	60	32	1	3	61	1.24
33515152--33515182	9	3.4	9	90	0	53	25	12	22	38	1.90
33515236--33515272	9	4.1	9	89	0	56	45	16	8	29	1.76
33515771--33515806	11	3.3	11	92	0	54	22	0	2	75	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33518518--33518557	18	2.1	20	86	9	57	60	0	7	32	1.25
33525877--33525959	39	2.1	38	81	16	91	37	3	2	56	1.30
33525870--33525973	38	2.7	39	81	15	110	37	3	1	56	1.28
33525906--33525965	9	6.7	9	75	17	54	38	1	1	58	1.18
33525909--33525985	9	8.3	9	71	13	50	35	2	2	59	1.25
33531156--33531190	15	2.3	15	95	0	61	57	0	8	34	1.29
33547335--33547408	29	2.5	29	88	4	103	47	13	14	24	1.81
33550232--33550456	10	23.3	9	65	20	57	59	5	2	32	1.34
33550335--33550376	17	2.6	16	82	14	50	69	2	0	28	1.01
33550947--33551042	9	10.5	8	74	18	66	34	1	5	59	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187