genome.fa.s15.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  162  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49102639--49102827	93	2.0	93	90	2	299	36	14	16	32	1.89
49110606--49110634	15	1.9	15	100	0	58	31	6	27	34	1.83
49116887--49116944	20	2.9	20	89	5	91	60	5	1	32	1.29
49120441--49120738	50	5.9	50	79	3	265	29	21	26	22	1.99
49126601--49126647	15	3.1	16	80	17	55	36	2	44	17	1.60
49132162--49132216	26	2.1	26	80	16	60	50	5	1	41	1.36
49132223--49132287	19	3.6	18	74	10	51	66	4	0	29	1.12
49134583--49134643	21	3.0	21	75	4	61	40	9	4	44	1.59
49135404--49135450	21	2.2	22	81	11	62	63	4	2	29	1.25
49135414--49135457	21	2.2	20	91	4	70	72	4	2	20	1.13
49135484--49135521	15	2.4	17	86	8	53	68	5	5	21	1.29
49135484--49135537	18	3.3	15	80	12	54	68	3	3	24	1.22
49135665--49135704	21	1.9	21	89	0	62	70	0	7	22	1.12
49137144--49137187	17	2.6	17	88	0	61	31	6	25	36	1.82
49139872--49140153	121	2.3	121	99	0	555	35	17	8	38	1.81
49143080--49143233	77	2.0	77	94	0	272	25	23	15	35	1.94
49143420--49143678	130	2.0	130	93	0	446	33	14	18	33	1.92
49147590--49147706	62	1.9	59	87	5	171	49	2	4	43	1.35
49149504--49149590	19	4.6	19	82	2	86	25	25	28	20	1.99
49149563--49149599	19	1.9	19	94	0	65	35	27	21	16	1.94
49149564--49149609	19	2.4	19	85	0	56	36	26	17	19	1.94
49152256--49152293	6	6.3	6	100	0	76	31	18	15	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49153101--49153156	27	2.1	27	96	0	103	28	16	10	44	1.80
49155474--49155520	18	2.7	18	83	3	60	21	38	10	29	1.87
49155474--49155531	18	3.3	18	81	11	59	20	39	12	27	1.88
49157523--49157556	17	2.1	17	88	5	52	17	5	11	64	1.45
49158495--49158626	49	2.7	48	82	8	176	47	12	11	28	1.75
49162997--49163234	49	4.9	50	84	4	324	43	10	15	30	1.80
49162994--49163234	98	2.5	98	95	1	430	43	9	15	31	1.80
49166235--49166411	85	2.1	85	94	0	309	41	20	14	23	1.88
49173069--49173296	102	2.2	102	89	2	350	20	19	28	32	1.97
49173169--49173221	27	1.9	28	96	3	99	15	26	32	26	1.95
49173200--49173332	33	3.7	33	72	20	115	21	19	27	31	1.97
49180576--49180730	33	4.6	33	71	21	124	19	20	27	32	1.97
49180574--49180777	102	2.0	102	92	0	336	22	20	27	30	1.98
49182945--49182974	12	2.5	12	88	0	51	73	0	10	16	1.09
49196707--49196797	44	2.1	44	87	4	130	47	9	10	31	1.72
49201122--49201306	79	2.3	81	84	7	236	24	22	27	25	2.00
49201123--49201306	40	4.6	40	83	9	216	24	22	27	25	2.00
49201175--49201339	79	2.1	79	84	6	210	26	21	27	25	1.99
49217109--49217503	198	2.0	198	98	0	763	29	15	26	28	1.96
49218162--49218360	99	2.0	99	97	0	371	43	9	15	31	1.78
49221446--49221569	61	2.0	62	95	1	223	22	16	16	45	1.85
49225256--49225285	15	1.9	16	93	6	53	16	23	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49226955--49226988	10	3.3	10	91	4	50	52	8	0	38	1.33
49227389--49227427	16	2.4	16	100	0	78	25	17	10	46	1.80
49229050--49229107	30	1.9	30	82	6	73	24	31	29	15	1.95
49233852--49233878	6	4.5	6	100	0	54	14	0	0	85	0.61
49245406--49245442	18	2.1	19	90	10	60	75	0	0	24	0.80
49245914--49245952	20	2.0	20	85	9	55	38	0	0	61	0.96
49246662--49246710	21	2.4	20	83	6	71	32	0	6	61	1.21
49248715--49248745	3	10.3	3	100	0	62	67	0	0	32	0.91
49248633--49248852	112	2.0	112	100	0	440	49	19	3	28	1.65
49248827--49248852	3	8.7	3	100	0	52	69	0	0	30	0.89
49252742--49252817	32	2.4	32	90	0	125	47	23	7	21	1.77
49252748--49252805	16	3.6	16	78	0	71	44	18	10	25	1.82
49252766--49252817	16	3.2	16	80	0	68	50	21	7	21	1.73
49272344--49272412	25	2.8	24	75	12	77	37	20	20	21	1.94
49275670--49275708	11	3.4	11	80	13	51	69	2	0	28	1.02
49275743--49275778	17	2.1	18	90	10	58	75	0	0	25	0.81
49277008--49277055	21	2.3	21	85	0	60	31	0	6	62	1.20
49279657--49279692	18	2.0	18	94	0	63	16	13	27	41	1.87
49281398--49281440	12	3.6	12	80	0	50	32	6	2	58	1.38
49282149--49282186	17	2.2	18	81	13	53	10	7	5	76	1.15
49282153--49282188	17	2.2	17	90	5	56	8	8	5	77	1.11
49287481--49287536	28	2.0	28	96	0	103	48	7	8	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49288261--49288347	44	2.0	45	93	2	149	26	13	25	34	1.93
49288639--49288831	100	1.9	100	89	2	298	30	19	22	27	1.98
49288838--49289177	44	7.8	44	73	12	209	31	20	20	27	1.97
49288823--49289301	218	2.2	219	84	2	615	31	20	21	26	1.98
49289203--49289290	45	2.0	44	81	2	104	37	23	17	21	1.94
49288972--49289301	44	7.5	45	71	11	148	32	21	20	25	1.98
49290728--49290791	3	21.3	3	88	0	92	32	3	1	62	1.20
49290712--49290791	18	4.1	20	78	13	71	33	2	2	61	1.23
49291484--49291522	16	2.4	17	91	4	62	10	7	5	76	1.13
49293269--49293344	32	2.4	32	93	0	125	47	22	9	21	1.78
49293269--49293344	16	4.8	16	74	4	73	47	22	9	21	1.78
49295071--49295109	21	1.9	21	89	5	62	28	0	7	64	1.21
49303595--49303644	22	2.3	22	83	10	59	60	2	32	6	1.32
49307392--49307441	26	1.9	26	92	8	84	24	8	8	60	1.52
49312179--49312287	52	2.1	52	91	5	175	41	7	18	33	1.78
49316441--49316549	54	2.0	54	96	0	200	27	16	1	54	1.53
49317666--49317709	20	2.3	19	84	4	52	43	2	0	54	1.12
49318884--49318930	24	2.0	23	88	8	69	36	17	10	36	1.84
49319620--49319679	20	3.0	20	80	9	77	38	11	13	36	1.81
49324138--49324185	21	2.3	21	92	0	78	31	20	14	33	1.93
49328247--49328282	18	1.9	19	88	5	56	58	13	13	13	1.64
49331760--49331806	17	2.7	17	83	9	51	17	4	6	72	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49332651--49332699	25	2.0	25	91	0	80	30	8	4	57	1.47
49338282--49338321	21	2.0	21	85	5	55	12	22	12	52	1.72
49349746--49349833	39	2.3	39	91	0	140	42	19	18	20	1.90
49353535--49353732	101	2.0	101	94	0	351	31	13	14	40	1.85
49366682--49366719	18	2.1	19	90	5	60	52	5	21	21	1.66
49369058--49369084	13	2.1	13	100	0	54	29	0	22	48	1.51
49371344--49371465	43	2.9	42	86	3	163	22	33	18	25	1.96
49371392--49371596	43	4.8	43	83	1	250	27	25	18	29	1.98
49371348--49371594	86	2.9	86	82	2	282	25	27	18	28	1.98
49373899--49373941	21	2.0	21	86	0	59	48	16	6	27	1.71
49373852--49373986	68	2.0	68	88	0	198	48	14	8	27	1.74
49373979--49374071	30	3.1	30	81	7	109	52	11	10	24	1.70
49382130--49382315	41	4.5	41	84	2	248	28	31	19	20	1.97
49388351--49388629	135	2.1	136	89	3	420	39	5	11	44	1.62
49388619--49388681	31	2.1	31	90	3	101	33	1	7	57	1.37
49389203--49389249	24	1.9	24	83	12	60	31	6	6	55	1.51
49389406--49389435	3	10.0	3	92	0	51	30	0	3	66	1.07
49392655--49392731	30	2.6	30	89	4	120	22	7	16	53	1.69
49396144--49396254	42	2.7	42	83	2	145	50	16	17	16	1.79
49396155--49396254	21	4.8	21	77	3	94	50	15	18	17	1.79
49400917--49400953	18	2.1	18	90	10	58	62	5	0	32	1.18
49402132--49402174	15	2.9	14	86	10	59	25	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49402611--49403211	50	12.0	50	72	8	364	23	20	22	32	1.98
49402598--49403206	100	6.1	98	83	6	631	24	20	22	33	1.97
49402598--49403206	200	3.0	196	86	5	737	24	20	22	33	1.97
49404510--49404561	7	7.4	7	85	8	70	11	13	3	71	1.28
49410286--49410322	18	2.1	18	90	10	58	62	5	0	32	1.18
49411498--49411542	19	2.4	19	100	0	90	22	4	13	60	1.51
49411549--49411601	14	3.5	15	82	15	65	22	0	1	75	0.90
49411549--49411608	5	12.2	5	79	13	54	21	0	3	75	0.95
49411552--49411599	23	2.1	23	84	7	62	20	0	2	77	0.88
49411549--49411603	24	2.4	23	82	11	69	21	0	1	76	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187