genome.fa.s15.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  2  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294357--294393	16	2.3	16	100	0	74	35	0	5	59	1.20
300326--300374	22	2.3	20	80	16	55	14	53	22	10	1.71
302962--302990	14	2.0	15	93	6	51	62	0	6	31	1.22
303386--303428	20	2.2	20	91	0	68	11	27	20	39	1.88
303512--303544	3	11.3	3	87	6	50	69	0	30	0	0.88
303814--303850	16	2.3	16	100	0	74	35	0	5	59	1.20
305835--305904	11	6.6	11	75	18	60	41	4	0	54	1.20
305816--305966	41	3.7	41	80	10	175	35	1	1	61	1.16
305846--305907	29	2.1	29	85	8	81	38	3	0	58	1.15
305826--305939	38	2.9	38	90	6	167	38	2	0	57	1.18
305914--305939	11	2.4	11	100	0	52	38	0	0	61	0.96
306356--306457	33	3.1	33	82	0	123	10	46	15	27	1.79
307849--307933	36	2.4	35	88	9	120	37	3	7	51	1.46
307997--308042	19	2.5	18	82	3	56	36	0	4	58	1.18
308155--308209	21	2.6	21	85	8	85	27	38	9	25	1.86
315169--315228	30	1.9	32	86	6	88	28	15	6	50	1.69
325087--325139	23	2.4	22	76	20	56	9	18	1	69	1.25
332600--332802	46	4.3	48	88	7	265	35	14	21	28	1.92
332534--332802	98	2.7	98	93	0	457	34	14	22	28	1.93
332766--332911	37	4.0	37	93	1	242	36	16	21	24	1.94
335630--335697	31	2.2	31	89	0	109	36	16	5	41	1.72
336703--336770	31	2.2	31	91	0	118	36	14	5	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338978--339035	26	2.2	27	85	11	77	67	1	3	27	1.17
348895--348926	3	10.7	3	100	0	64	34	31	0	34	1.58
349752--349823	31	2.3	32	83	9	94	61	6	9	22	1.51
352967--353064	19	4.8	19	80	13	106	37	7	15	39	1.75
352968--353030	21	3.1	21	90	4	94	39	7	12	39	1.73
353030--353074	23	2.0	23	86	4	65	33	4	15	46	1.66
353702--353760	22	2.5	22	84	13	66	28	1	3	66	1.18
353844--353881	15	2.4	17	86	8	53	15	7	0	76	1.01
357022--357067	2	23.0	2	100	0	92	50	0	50	0	1.00
361235--361302	32	2.1	34	91	5	113	33	5	11	48	1.64
362054--362119	35	1.9	34	84	3	87	30	18	25	25	1.98
369813--370158	27	12.9	27	83	2	374	41	21	17	19	1.90
370127--370263	72	1.9	71	82	7	170	37	16	19	26	1.92
370216--370290	26	2.8	26	86	6	89	37	17	21	24	1.94
370109--370291	98	1.9	99	92	1	314	36	16	20	26	1.94
374108--374304	107	1.8	107	88	0	304	29	15	27	27	1.96
374879--374907	12	2.4	12	100	0	58	24	0	13	62	1.32
381830--382081	123	2.1	122	87	4	366	38	26	19	15	1.92
382601--382636	3	12.0	3	100	0	72	33	33	0	33	1.58
383302--383336	16	2.2	16	100	0	70	71	0	5	22	1.07
385727--385801	26	2.9	26	83	0	87	40	22	17	20	1.92
387387--387419	17	1.9	17	93	0	57	48	15	18	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389595--389788	50	3.9	50	88	0	298	25	22	32	19	1.97
393074--393100	3	9.0	3	100	0	54	33	33	0	33	1.58
395487--395534	18	2.7	17	78	9	60	39	16	2	41	1.60
400753--400822	34	2.0	36	86	8	99	5	28	8	57	1.52
401475--401716	27	9.0	27	80	0	250	43	18	16	21	1.87
401477--401730	81	3.1	79	84	5	294	42	18	16	22	1.89
402091--402178	28	3.1	28	88	1	113	25	21	22	30	1.99
402095--402212	28	4.0	28	80	9	85	25	22	22	29	1.99
402213--402289	40	1.9	40	91	0	127	24	11	31	32	1.91
404611--404644	16	2.0	16	88	11	50	23	11	0	64	1.26
404718--404800	3	27.0	3	80	4	94	30	2	6	61	1.33
405097--405168	4	18.0	4	100	0	144	50	25	0	25	1.50
405217--405291	29	2.6	28	81	6	87	33	8	1	57	1.36
409757--409800	20	2.2	20	83	4	52	43	4	22	29	1.73
412839--412977	71	2.0	71	98	0	269	34	23	14	28	1.93
413108--413334	54	4.2	54	80	6	253	41	18	16	23	1.90
413105--413320	27	8.0	27	77	6	188	42	18	16	22	1.89
413513--413588	26	2.9	26	90	0	107	15	19	23	40	1.90
413544--413594	26	2.0	26	84	0	66	21	17	19	41	1.91
413676--413768	27	3.4	28	75	8	75	26	19	20	33	1.96
413675--413764	28	3.2	28	74	4	83	26	20	20	33	1.97
429315--429349	18	2.0	18	88	5	54	14	28	45	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431270--431316	24	2.0	23	83	4	58	42	10	10	36	1.74
432693--432744	27	1.9	27	84	7	70	73	1	13	11	1.19
435376--435401	6	4.3	6	100	0	52	15	0	0	84	0.62
436218--436350	66	2.0	66	94	0	230	40	20	6	32	1.78
438910--438956	19	2.5	20	82	10	62	19	0	2	78	0.85
438925--438961	19	1.9	19	94	0	65	27	0	2	70	1.01
446578--446609	16	2.0	16	93	0	55	12	34	31	21	1.91
448345--448435	5	17.4	5	76	15	78	2	20	2	74	1.03
448345--448435	21	4.3	21	73	13	80	2	20	2	74	1.03
450249--450313	27	2.4	28	82	10	73	3	20	3	73	1.10
450246--450316	16	4.4	15	72	13	52	2	19	2	74	1.07
459614--459705	5	17.4	5	72	16	62	2	19	2	76	1.00
459651--459702	11	4.8	11	79	13	63	1	15	0	82	0.75
459635--459705	21	3.3	21	80	7	72	1	19	1	77	0.92
463390--463585	27	7.3	26	73	12	119	43	21	13	20	1.86
463390--463585	54	3.6	53	71	17	143	43	21	13	20	1.86
463389--463543	81	1.9	81	80	7	181	43	22	12	21	1.85
463992--464099	28	3.9	28	91	0	171	23	22	21	33	1.97
466901--466929	8	3.8	8	95	4	51	24	34	0	41	1.55
466967--467177	74	2.8	75	89	3	309	30	26	21	21	1.98
467078--467321	102	2.4	102	95	0	427	32	28	18	20	1.96
470969--470997	6	5.0	6	95	4	51	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471205--471256	8	6.5	8	77	14	54	1	15	0	82	0.75
471196--471252	25	2.2	25	84	9	71	1	19	1	77	0.95
471211--471256	21	2.2	21	88	11	69	2	15	0	82	0.76
471208--471259	20	2.6	19	83	16	70	1	17	0	80	0.80
475596--475629	17	2.1	17	88	5	52	50	0	17	32	1.47
476502--476601	42	2.4	42	93	0	164	34	11	28	27	1.90
483909--483975	22	3.2	21	74	13	68	61	0	1	37	1.05
483962--484053	9	9.4	9	67	19	51	68	0	2	29	1.01
483952--484024	30	2.5	29	93	4	128	65	0	2	31	1.06
483904--484130	40	5.6	40	82	9	271	62	0	2	35	1.10
483903--484130	81	2.8	82	86	6	286	61	0	2	35	1.10
484009--484116	12	10.4	11	67	22	56	61	0	3	35	1.14
483952--484024	29	2.5	29	95	4	130	65	0	2	31	1.06
488319--488354	18	1.9	18	88	5	54	58	2	0	38	1.13
490536--490587	18	2.8	19	80	11	56	42	0	1	55	1.10
490536--490575	19	2.2	18	86	4	53	40	0	2	57	1.12
497522--497567	23	2.0	22	83	4	56	58	0	8	32	1.28
502047--502080	18	1.9	17	88	5	50	38	0	5	55	1.24
502608--502734	36	3.5	36	70	10	114	42	5	4	47	1.47
502593--502738	73	2.0	75	93	2	251	39	6	6	48	1.53
503609--503648	21	1.9	21	84	0	53	42	0	5	52	1.23
513586--513870	142	2.0	141	93	0	489	29	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514032--514060	14	2.1	14	100	0	58	51	6	0	41	1.28
513984--514137	62	2.5	62	94	2	265	34	7	8	50	1.60
515456--515489	17	2.0	17	88	0	50	50	11	20	17	1.77
515707--515748	21	2.0	21	90	0	66	30	11	11	45	1.77
516604--516709	54	2.0	54	88	3	160	24	15	19	40	1.90
524799--524832	17	2.0	17	88	0	50	50	11	20	17	1.77
525050--525091	21	2.0	21	90	0	66	30	11	11	45	1.77
525705--525807	41	2.5	41	83	0	116	27	20	26	26	1.99
527463--527493	14	2.2	14	94	0	53	41	6	19	32	1.77
528686--528741	26	2.2	26	81	12	62	71	10	1	16	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187