genome.fa.s15.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  15  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3920091--3920120	15	1.9	16	93	6	53	33	0	23	43	1.54
3920119--3920165	23	2.0	23	91	0	76	36	12	12	38	1.82
3920429--3920519	25	3.6	24	80	5	76	24	19	24	31	1.98
3920735--3920779	22	2.0	24	91	8	76	48	4	13	33	1.62
3932712--3932791	26	3.3	26	63	22	66	50	7	7	35	1.59
3932711--3932799	45	2.0	45	95	0	160	48	6	7	37	1.59
3936808--3936858	19	2.7	19	90	0	84	41	15	9	33	1.80
3943577--3943619	19	2.2	20	84	12	63	4	11	18	65	1.42
3943578--3943618	18	2.2	19	91	4	66	4	12	19	63	1.46
3943779--3943942	87	1.9	87	91	3	267	26	10	9	53	1.65
3944016--3944215	103	1.9	102	84	8	260	26	9	12	52	1.68
3943858--3944341	254	1.9	254	83	6	631	27	12	12	47	1.77
3944896--3944966	15	4.9	14	83	11	74	35	40	0	23	1.55
3944911--3944959	14	3.4	14	79	20	57	32	44	0	22	1.53
3945571--3945725	73	2.1	73	82	7	190	25	23	23	27	2.00
3945625--3946066	114	3.9	114	88	2	611	25	25	22	26	2.00
3945967--3946110	72	2.0	72	86	0	198	22	22	25	29	1.99
3952701--3952777	40	1.9	40	97	0	145	38	18	20	22	1.93
3984849--3984890	18	2.3	18	87	0	57	28	14	26	30	1.95
3985591--3985753	49	3.3	49	85	3	211	33	23	12	30	1.92
3986933--3987564	134	4.7	134	80	4	659	33	17	12	36	1.88
3987647--3987890	134	1.8	134	83	5	323	33	15	11	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3987686--3988140	243	1.9	243	82	4	578	31	17	11	39	1.86
3988093--3988196	54	1.9	54	98	0	199	26	25	8	39	1.84
3989970--3990143	71	2.5	70	83	7	192	25	17	26	31	1.97
3993707--3993736	15	2.0	15	93	0	51	56	23	6	13	1.60
3998704--3998871	70	2.4	71	80	5	180	29	21	24	25	1.99
4010515--4010598	36	2.4	36	82	7	93	32	22	10	34	1.89
4010473--4011017	133	4.1	134	77	6	496	33	19	10	36	1.85
4010473--4011017	267	2.0	267	80	4	600	33	19	10	36	1.85
4011013--4011277	134	2.0	134	84	1	352	30	16	13	38	1.87
4017635--4017692	27	2.2	27	84	9	75	34	0	1	63	1.04
4025109--4025143	18	1.9	18	88	0	52	42	17	14	25	1.86
4034828--4034860	6	5.5	6	100	0	66	0	0	15	84	0.61
4045507--4045812	153	2.0	153	94	2	544	28	6	32	32	1.83
4046394--4046701	27	11.5	27	81	1	334	35	18	22	24	1.96
4046745--4046803	24	2.5	24	86	13	86	20	8	23	47	1.77
4046975--4047285	32	9.7	32	72	9	152	21	20	20	36	1.95
4046975--4047275	64	4.7	63	80	6	266	21	20	20	37	1.94
4047008--4047279	96	2.8	95	75	10	250	20	20	21	37	1.94
4047167--4047305	32	4.4	32	75	4	102	20	20	20	37	1.95
4049144--4049193	23	2.2	23	100	0	100	52	12	14	22	1.74
4055927--4055961	17	2.1	17	100	0	70	42	28	11	17	1.83
4056319--4056414	47	2.0	47	100	0	192	25	10	20	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4059902--4059948	24	2.0	24	91	0	76	36	2	6	55	1.37
4062610--4062652	22	2.0	22	90	0	68	16	9	34	39	1.80
4062938--4063296	44	8.2	44	87	1	432	25	24	21	29	1.99
4077042--4077084	22	2.0	22	90	0	68	16	9	34	39	1.80
4083853--4083888	18	1.9	19	88	5	56	55	2	2	38	1.29
4083971--4084109	59	2.4	59	100	0	278	25	18	23	33	1.97
4092008--4092051	21	2.0	21	86	4	61	72	4	11	11	1.25
4093152--4093180	14	2.0	15	93	6	51	13	10	0	75	1.04
4096775--4096809	15	2.4	15	90	4	54	31	0	5	62	1.18
4103684--4103758	19	3.8	19	89	6	123	36	10	17	36	1.84
4104318--4104394	29	2.8	27	82	9	84	37	2	2	57	1.27
4113062--4113469	44	9.3	44	61	7	146	26	29	24	20	1.99
4113048--4113535	88	5.5	88	91	0	760	28	27	23	20	1.99
4114400--4114474	19	3.8	19	89	6	123	36	10	17	36	1.84
4119197--4119325	47	2.8	47	82	5	158	28	5	24	41	1.77
4123498--4123686	41	4.6	41	81	1	227	23	29	14	33	1.94
4123496--4123690	82	2.4	81	85	4	257	23	28	13	34	1.93
4125208--4125241	17	1.9	18	94	5	61	23	0	0	76	0.79
4127146--4127212	10	7.4	9	74	17	59	34	1	1	62	1.13
4129460--4129526	10	7.4	9	74	17	59	34	1	1	62	1.13
4140259--4140310	26	2.0	26	96	0	95	26	25	21	26	1.99
4140559--4140586	3	9.3	3	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4146047--4146087	21	2.0	21	85	9	57	29	26	0	43	1.55
4148520--4148570	26	2.0	26	84	7	68	5	23	0	70	1.09
4148599--4148662	7	8.6	7	77	16	58	53	0	1	45	1.10
4148596--4148659	8	8.4	8	78	13	64	51	0	1	46	1.10
4162310--4162343	4	8.0	4	90	9	50	23	0	2	73	0.97
4162293--4162352	22	2.7	22	73	19	61	26	0	6	66	1.16
4169435--4169544	44	2.5	44	89	2	159	38	24	17	20	1.93
4170545--4170577	17	2.0	17	88	5	50	33	6	0	60	1.21
4176471--4176523	27	2.0	27	81	7	63	28	5	20	45	1.74
4184204--4184261	28	2.1	28	86	0	80	56	10	5	27	1.54
4185263--4185311	18	2.6	19	81	12	57	75	4	0	20	0.96
4185262--4185311	19	2.7	19	78	12	59	74	4	0	22	0.99
4186188--4186248	30	2.0	30	96	0	113	29	13	16	40	1.86
4187457--4187523	26	2.5	27	81	11	84	26	16	32	23	1.96
4196115--4196153	17	2.3	17	86	8	53	46	5	10	38	1.60
4208842--4208887	17	2.8	18	84	15	64	28	41	30	0	1.56
4217931--4218102	75	2.3	75	83	1	220	36	19	18	25	1.94
4217977--4218093	35	3.2	35	70	15	101	36	20	17	24	1.94
4220576--4220635	25	2.4	26	86	8	88	21	31	18	28	1.97
4221786--4221825	21	1.9	21	89	0	62	25	10	17	47	1.78
4237224--4237328	45	2.3	45	93	3	176	16	23	19	40	1.90
4237224--4237347	45	2.7	43	84	9	151	17	22	16	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4240675--4240771	39	2.5	38	86	1	131	47	8	6	38	1.59
4241792--4241972	90	2.0	90	94	0	317	38	12	17	32	1.87
4245474--4245517	21	2.1	21	100	0	88	38	9	13	38	1.77
4245473--4245528	21	2.8	19	87	10	85	37	8	16	37	1.80
4245486--4245551	23	3.0	23	82	12	77	37	6	16	39	1.74
4245517--4245561	23	2.0	23	86	4	65	33	4	15	46	1.66
4245727--4245765	19	2.0	21	85	10	55	15	10	5	69	1.34
4245974--4246015	9	5.0	9	77	16	54	30	0	2	66	1.04
4245986--4246039	15	3.4	15	80	12	63	31	0	3	64	1.11
4245974--4246039	33	2.0	33	88	5	98	31	0	3	65	1.08
4245973--4246029	24	2.4	24	82	8	73	31	0	1	66	1.02
4246265--4246296	17	1.9	16	93	6	55	28	0	6	65	1.16
4246363--4246400	10	3.9	10	86	3	51	34	2	0	63	1.09
4246792--4246833	19	2.2	20	82	4	50	30	7	11	50	1.66
4256155--4256236	40	2.1	39	84	6	103	43	28	17	10	1.82
4257295--4257328	18	1.9	18	88	5	52	38	14	0	47	1.45
4258079--4258245	33	5.1	33	74	1	129	17	19	14	47	1.82
4258079--4258244	65	2.5	66	79	3	165	18	19	14	47	1.82
4263474--4263581	15	7.2	15	69	12	87	43	7	23	25	1.79
4263467--4263581	30	3.8	30	97	0	203	44	6	23	25	1.78
4264212--4264304	30	3.1	30	95	1	159	26	24	6	41	1.79
4264221--4264298	15	5.2	15	70	11	70	26	23	7	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4265922--4266336	137	3.0	137	95	0	749	31	26	7	33	1.85
4266599--4266645	14	3.5	14	94	5	80	38	27	10	23	1.88
4269049--4269106	22	2.6	22	81	7	64	41	17	5	36	1.72
4270742--4270799	15	3.9	15	68	19	50	41	0	3	55	1.17
4282325--4282381	30	1.9	30	85	0	78	24	21	33	21	1.97
4283407--4283460	6	8.7	6	82	12	56	79	0	18	1	0.82
4283408--4283460	18	2.9	18	85	2	70	79	0	18	1	0.83
4283414--4283467	25	2.2	25	86	3	74	79	0	14	5	0.90
4284483--4284515	17	1.9	17	93	0	57	36	12	24	27	1.91
4287991--4288081	44	2.0	45	93	2	157	31	14	16	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187