genome.fa.s15.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  181  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55307505--55307557	26	2.0	26	85	7	72	47	7	1	43	1.42
55307733--55307776	3	14.7	3	100	0	88	68	31	0	0	0.90
55307775--55307809	3	11.3	3	93	6	61	65	2	0	31	1.07
55307855--55307893	20	2.0	21	85	10	55	66	10	0	23	1.22
55308025--55308100	27	2.8	27	85	0	107	15	27	28	27	1.96
55308150--55308224	27	2.7	27	91	6	116	44	0	10	45	1.38
55314423--55314463	18	2.3	18	86	0	55	34	26	17	21	1.95
55316769--55316850	6	13.8	6	97	1	148	68	13	0	18	1.21
55326791--55326824	17	1.9	18	88	5	52	58	5	2	32	1.37
55327641--55327699	11	5.4	11	86	13	77	23	35	0	40	1.55
55328112--55328193	41	2.0	41	95	0	146	26	21	21	29	1.99
55329981--55330077	34	2.8	34	85	7	124	44	2	7	46	1.42
55333362--55333834	95	4.7	103	81	7	437	39	16	2	41	1.63
55333498--55333665	43	3.7	43	70	14	138	37	22	2	38	1.67
55333402--55333806	95	4.2	94	83	6	438	39	17	2	39	1.65
55338871--55338955	29	2.9	27	75	13	80	40	22	23	14	1.90
55341709--55341740	2	16.0	2	93	0	55	46	0	50	3	1.17
55341712--55341744	10	3.3	10	95	0	57	42	0	51	6	1.26
55341709--55341748	14	2.9	14	92	0	62	42	0	50	7	1.30
55343345--55343398	27	2.0	27	82	13	67	31	3	3	61	1.31
55350780--55350805	13	2.0	13	100	0	52	23	7	30	38	1.83
55351290--55351367	27	2.9	27	98	0	147	44	20	10	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55366395--55366426	16	2.0	16	93	0	55	25	15	0	59	1.36
55366650--55366845	51	3.9	50	80	8	236	30	27	16	25	1.96
55366800--55366832	14	2.5	13	90	9	50	39	27	9	24	1.85
55366652--55366836	101	1.8	102	87	3	275	30	26	17	25	1.97
55377768--55377819	9	5.7	9	76	13	52	34	5	40	19	1.75
55377768--55377819	19	2.9	17	78	13	59	34	5	40	19	1.75
55379714--55379740	14	1.9	14	100	0	54	29	0	37	33	1.58
55380210--55380263	27	2.0	28	85	3	74	50	0	7	42	1.30
55380450--55380478	14	2.0	15	93	6	51	37	34	0	27	1.57
55381713--55381739	14	1.9	14	100	0	54	29	0	37	33	1.58
55382209--55382262	27	2.0	28	85	3	74	50	0	7	42	1.30
55382449--55382477	14	2.0	15	93	6	51	37	34	0	27	1.57
55383931--55383957	14	1.9	14	100	0	54	29	0	37	33	1.58
55384427--55384480	27	2.0	28	85	3	74	50	0	7	42	1.30
55384667--55384695	14	2.0	15	93	6	51	37	34	0	27	1.57
55387129--55387181	22	2.4	22	81	12	56	52	7	0	39	1.30
55392811--55392884	25	3.0	25	78	7	78	28	27	16	28	1.97
55392820--55392892	25	2.9	25	82	8	94	28	27	17	26	1.98
55396058--55396287	115	2.0	115	93	1	399	39	9	20	31	1.83
55400543--55400580	15	2.5	15	83	12	51	36	2	10	50	1.51
55404459--55404530	35	2.1	35	91	0	117	31	18	20	29	1.96
55414775--55414847	25	2.9	25	91	0	119	36	16	19	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55416267--55416304	20	1.9	20	84	10	51	36	10	5	47	1.61
55432225--55432265	20	2.0	20	95	0	73	31	7	9	51	1.62
55432969--55433175	82	2.5	82	88	1	299	28	14	11	46	1.78
55432948--55433203	82	3.1	81	83	5	284	28	14	11	46	1.79
55435420--55435791	82	4.5	82	80	2	374	29	15	9	44	1.79
55440300--55440348	20	2.5	20	89	0	71	28	6	10	55	1.57
55443308--55443477	27	6.3	28	80	9	131	35	18	21	24	1.96
55443308--55443477	81	2.1	81	80	6	184	35	18	21	24	1.96
55443308--55443477	54	3.1	54	74	5	148	35	18	21	24	1.96
55443526--55443592	23	2.8	24	86	2	82	17	7	26	47	1.74
55443527--55443608	24	3.5	23	83	5	92	18	7	26	47	1.74
55443780--55443926	64	2.3	64	91	0	240	19	20	23	36	1.95
55443782--55443933	32	4.8	32	73	4	128	21	21	21	35	1.96
55443945--55443991	22	2.1	22	84	0	58	19	12	17	51	1.77
55444003--55444056	26	2.1	26	85	0	72	20	29	18	31	1.96
55444010--55444061	26	2.0	26	88	0	77	23	26	17	32	1.96
55444803--55444864	20	3.1	20	83	0	79	20	19	19	40	1.92
55444803--55444930	40	3.2	40	81	0	139	21	21	18	39	1.93
55444853--55444940	40	2.2	40	89	0	131	18	22	21	37	1.94
55449382--55449538	41	3.8	41	83	1	172	33	25	22	18	1.96
55449471--55449502	16	2.0	16	93	0	55	28	18	28	25	1.98
55452771--55452812	22	1.9	22	85	9	59	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55452778--55452866	33	2.8	32	88	6	126	52	3	4	39	1.38
55453440--55453503	19	3.3	20	82	8	71	37	0	4	57	1.19
55458508--55458543	11	3.2	11	96	4	63	19	38	8	33	1.82
55469380--55469420	9	4.6	9	87	9	57	63	2	0	34	1.08
55469380--55469420	17	2.3	19	87	8	59	63	2	0	34	1.08
55471282--55471335	19	2.8	19	91	0	90	37	14	9	38	1.79
55471259--55471335	38	1.9	41	87	10	115	40	14	7	37	1.75
55471935--55472420	101	4.8	101	89	1	726	25	22	21	30	1.99
55472005--55472161	51	3.1	51	62	1	118	25	19	22	33	1.97
55472020--55472389	50	7.4	50	62	8	142	24	22	21	32	1.98
55472266--55472421	50	3.1	49	64	13	120	24	25	22	28	2.00
55472754--55472963	44	5.0	44	82	12	244	30	25	16	26	1.97
55472810--55472875	33	2.0	34	96	3	125	27	25	22	24	2.00
55472766--55472917	77	2.0	78	89	1	234	31	25	18	24	1.97
55474318--55474364	16	2.7	17	87	9	60	2	19	0	78	0.85
55479510--55479601	19	4.8	19	91	0	157	38	16	7	38	1.77
55479487--55479601	38	2.9	38	92	5	176	39	16	6	37	1.76
55479779--55479811	15	2.1	16	88	11	50	27	0	6	66	1.15
55485685--55485718	16	2.1	17	88	5	52	64	0	0	35	0.94
55487208--55487269	15	4.3	15	73	19	51	53	0	3	43	1.17
55488331--55488456	50	2.5	50	82	0	153	36	24	11	26	1.90
55489393--55489448	25	2.2	26	84	9	71	51	5	25	17	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55490695--55490752	28	2.1	28	87	6	82	18	29	18	32	1.96
55490742--55490925	29	6.3	29	83	0	170	37	20	14	28	1.91
55490742--55490925	87	2.1	89	81	8	207	37	20	14	28	1.91
55500209--55500242	15	2.3	15	94	0	59	70	0	14	14	1.17
55505480--55505512	17	1.9	17	100	0	66	36	0	27	36	1.57
55513887--55513956	29	2.4	29	88	4	106	38	12	27	21	1.90
55513945--55514017	29	2.5	30	93	2	121	43	10	28	16	1.82
55513887--55514135	30	8.4	30	77	7	122	37	13	26	22	1.91
55514858--55514984	43	3.1	42	63	19	106	32	6	19	41	1.77
55514821--55514984	79	2.1	80	96	1	303	34	6	19	39	1.78
55521239--55521308	29	2.4	29	78	0	77	34	10	30	25	1.89
55521298--55521487	30	6.4	30	77	4	161	38	13	27	20	1.90
55521298--55521487	60	3.2	60	74	6	197	38	13	27	20	1.90
55521332--55521517	90	2.1	90	83	4	232	36	12	29	22	1.91
55521298--55521517	30	7.4	29	75	5	129	37	12	28	21	1.90
55525844--55526144	150	2.0	150	94	0	530	32	18	20	28	1.96
55542499--55542743	28	8.8	28	89	1	375	33	25	20	20	1.97
55542930--55543001	27	2.7	27	95	0	126	19	11	26	43	1.84
55549944--55549996	23	2.4	22	76	20	56	9	18	1	69	1.25
55559012--55559080	37	1.9	35	82	11	86	39	4	2	53	1.36
55559098--55559214	62	1.9	62	82	5	150	41	5	4	49	1.44
55561105--55561352	50	4.9	50	77	7	207	28	19	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55564221--55564319	40	2.5	38	82	6	110	41	5	6	47	1.50
55567093--55567154	31	2.0	31	100	0	124	32	9	16	41	1.80
55572839--55572899	31	2.0	31	100	0	122	32	9	14	42	1.79
55574810--55574834	11	2.3	11	100	0	50	16	0	24	60	1.36
55577928--55577962	17	2.1	17	94	0	61	28	11	31	28	1.92
55589011--55589134	25	5.0	25	85	3	153	29	16	23	30	1.96
55589088--55589142	25	2.2	25	83	6	67	25	23	25	25	2.00
55605282--55605333	22	2.4	22	83	6	61	30	7	25	36	1.84
55624355--55624414	29	2.1	29	100	0	120	30	0	13	56	1.37
55633546--55633607	15	4.2	15	76	12	65	40	0	1	58	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187