genome.fa.s15.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  25  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7287545--7287687	27	5.3	27	96	0	268	48	14	0	36	1.44
7293186--7293274	21	4.2	21	83	0	115	38	22	38	1	1.62
7293186--7293274	42	2.1	42	89	0	133	38	22	38	1	1.62
7293245--7293320	33	2.3	33	90	0	116	40	17	39	2	1.63
7293261--7293321	12	5.3	12	78	11	74	39	18	39	3	1.67
7293753--7294085	42	7.9	42	82	7	376	24	22	21	31	1.98
7293838--7294105	126	2.1	127	90	4	416	25	21	23	30	1.99
7297736--7297874	68	2.0	68	98	0	269	33	21	8	36	1.84
7300249--7300371	62	2.0	61	87	1	174	27	17	11	43	1.83
7317730--7317803	28	2.4	32	76	21	93	33	20	21	24	1.97
7317739--7317793	28	2.0	28	100	0	110	32	23	21	21	1.98
7317897--7317980	26	3.2	27	75	8	93	36	21	19	22	1.95
7335100--7335157	22	2.6	22	86	0	80	24	29	18	27	1.98
7338760--7338864	45	2.4	46	79	6	110	28	20	6	44	1.76
7342067--7342113	21	2.2	21	88	0	67	25	25	27	21	1.99
7347739--7347774	19	1.9	18	88	5	54	61	5	0	33	1.19
7350158--7350189	8	4.0	8	100	0	64	37	0	0	62	0.95
7350152--7350176	13	1.9	13	100	0	50	36	0	0	64	0.94
7350871--7351004	22	5.6	24	84	7	134	17	23	20	39	1.92
7350981--7351123	44	3.0	49	69	19	156	19	24	16	39	1.91
7350942--7351123	94	1.9	94	100	0	364	19	24	17	39	1.92
7351036--7351092	22	2.6	22	88	0	87	15	24	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7357075--7357114	5	7.6	5	83	10	53	40	0	0	60	0.97
7357080--7357109	8	3.8	8	90	0	51	40	0	0	60	0.97
7357074--7357114	16	2.6	16	92	0	73	39	0	0	60	0.96
7358214--7358347	22	5.6	24	84	7	134	17	23	20	39	1.92
7362907--7362936	13	2.3	13	94	0	51	46	3	0	50	1.18
7364769--7364832	4	16.5	4	78	18	73	43	1	0	54	1.09
7364786--7364828	10	4.0	10	83	16	59	41	0	0	58	0.98
7364775--7364849	23	3.4	23	89	7	111	42	1	0	56	1.08
7364767--7364833	23	2.6	27	79	18	97	41	1	0	56	1.08
7375951--7376033	41	2.0	41	100	0	166	30	14	7	48	1.71
7386821--7386854	17	2.0	17	88	0	50	20	11	5	61	1.50
7405302--7405328	2	13.5	2	100	0	54	51	0	0	48	1.00
7407295--7407362	34	1.9	37	85	8	97	58	1	4	35	1.27
7408533--7408559	14	1.9	14	100	0	54	14	37	0	48	1.45
7410167--7410233	34	1.9	35	87	3	100	31	7	13	47	1.70
7410161--7410237	14	5.0	15	71	20	52	32	7	15	44	1.75
7412909--7412939	16	1.9	16	100	0	62	25	0	35	38	1.56
7412974--7412999	8	3.2	8	100	0	52	23	0	0	76	0.78
7413029--7413067	15	2.6	15	80	11	53	38	0	0	61	0.96
7413037--7413072	16	2.2	16	95	0	63	38	0	0	61	0.96
7421897--7421971	10	7.6	10	72	14	66	62	1	0	36	1.04
7421899--7421971	20	3.7	20	78	15	80	64	1	0	34	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7421892--7421971	28	2.8	28	80	14	83	63	1	0	35	1.02
7421892--7421976	29	2.9	30	81	13	97	63	1	1	34	1.10
7422169--7422232	16	3.8	17	79	6	67	62	3	1	32	1.20
7422195--7422219	8	3.1	8	100	0	50	72	0	0	28	0.86
7422841--7422893	26	2.0	27	82	10	65	37	9	1	50	1.46
7423102--7423253	18	7.6	19	72	20	105	69	0	29	0	0.93
7423121--7423259	44	3.3	45	80	17	181	71	0	28	0	0.91
7428736--7428780	18	2.5	18	88	0	72	15	48	6	28	1.70
7429526--7429564	19	2.2	18	90	9	62	48	17	0	33	1.48
7429561--7429589	3	9.7	3	100	0	58	68	31	0	0	0.89
7429588--7429618	3	10.3	3	92	0	53	64	0	3	32	1.09
7429726--7429765	11	3.7	11	90	6	64	0	30	0	70	0.88
7429865--7429939	27	2.8	26	88	9	107	17	28	28	26	1.98
7429976--7430000	12	2.1	12	100	0	50	16	8	8	68	1.38
7430002--7430046	23	2.0	23	100	0	90	53	0	8	37	1.32
7431444--7431528	41	2.1	40	82	2	98	65	10	3	20	1.37
7431664--7431739	11	6.8	11	75	10	57	61	28	6	2	1.34
7431681--7431733	22	2.5	22	85	14	83	62	30	5	1	1.29
7434520--7434592	35	2.1	35	100	0	146	34	8	16	41	1.78
7437576--7437653	28	2.9	28	92	3	133	41	0	23	35	1.55
7437628--7437714	33	2.6	33	85	8	106	39	3	17	40	1.66
7437811--7438329	125	4.1	126	85	3	688	39	15	15	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7443144--7443187	21	2.1	21	86	0	61	15	20	15	47	1.82
7443291--7443325	12	2.9	12	100	0	70	34	5	17	42	1.73
7445098--7445194	42	2.3	42	87	0	149	21	27	27	22	1.99
7455385--7455419	12	2.9	12	91	8	54	34	34	5	25	1.80
7456753--7457050	50	5.9	50	80	5	269	23	28	20	27	1.99
7463730--7463765	17	2.1	17	90	10	56	33	16	0	50	1.46
7464014--7464140	21	6.0	21	84	0	128	43	17	23	15	1.87
7467757--7467794	20	1.9	20	94	0	67	52	2	0	44	1.14
7468721--7468764	19	2.3	19	88	7	63	50	4	0	45	1.22
7474063--7474094	13	2.5	13	94	0	55	50	0	34	15	1.45
7474407--7474447	22	1.9	21	85	5	55	17	12	0	70	1.16
7474757--7474803	24	2.0	23	83	8	58	44	8	4	42	1.54
7476793--7476832	20	2.0	21	95	5	73	32	5	0	62	1.17
7476797--7476840	20	2.2	20	83	0	52	29	4	6	59	1.44
7482212--7482629	54	8.0	53	70	12	236	26	21	14	38	1.91
7482213--7482628	105	4.0	104	77	5	331	26	20	14	38	1.91
7482641--7482786	54	2.7	54	80	6	143	28	20	12	38	1.89
7482886--7483063	92	1.9	93	82	5	227	35	15	12	36	1.85
7483038--7483087	24	2.1	24	81	7	57	32	14	14	40	1.85
7485331--7485381	3	17.7	3	76	15	54	39	0	1	58	1.09
7485330--7485381	13	4.1	13	80	7	54	40	0	1	57	1.10
7485851--7485884	17	1.9	18	88	5	52	41	0	23	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7486358--7486421	21	3.1	21	77	2	58	20	21	23	34	1.97
7494493--7494531	19	2.1	19	85	0	51	71	17	7	2	1.21
7495178--7495211	16	2.1	16	88	0	50	50	14	17	17	1.79
7498012--7498052	21	2.0	21	90	0	64	29	21	29	19	1.98
7499958--7499991	16	2.1	16	88	0	50	50	14	17	17	1.79
7506408--7506502	49	1.9	49	82	0	118	25	17	27	29	1.98
7507579--7507727	74	2.0	74	89	0	226	24	30	14	30	1.94
7509911--7510034	49	2.5	49	80	0	122	30	28	15	25	1.96
7512440--7512464	9	2.8	9	100	0	50	24	12	12	52	1.72
7516271--7516318	23	2.1	23	84	0	60	33	20	25	20	1.97
7521416--7521465	16	3.2	16	77	2	57	66	0	6	28	1.15
7521867--7521953	3	28.3	3	70	13	52	62	4	4	28	1.35
7522834--7522872	20	2.0	20	89	0	60	12	15	48	23	1.79
7527103--7527144	20	2.0	21	86	4	59	52	0	4	42	1.22
7537706--7537750	22	2.0	22	100	0	90	13	22	20	44	1.85
7548721--7548965	126	2.0	125	95	0	436	28	15	23	31	1.96
7554169--7554278	56	1.9	57	87	5	161	41	10	12	35	1.77
7554291--7554585	28	11.0	28	76	18	267	33	0	20	44	1.57
7554306--7554424	23	5.0	23	84	9	157	34	0	19	45	1.56
7554364--7554540	91	1.9	91	93	2	302	31	0	23	44	1.54
7554502--7554593	23	4.2	20	87	8	78	36	0	18	44	1.50
7554498--7554595	45	2.2	46	88	1	144	36	0	17	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7556210--7556259	18	2.7	19	79	11	59	66	0	0	34	0.92
7556217--7556279	30	2.2	29	91	5	101	61	1	0	36	1.05
7556217--7556280	29	2.2	28	86	8	92	60	1	0	37	1.06
7556330--7556388	30	2.0	30	86	6	84	35	1	32	30	1.68
7556308--7556410	52	2.0	51	84	5	136	35	0	29	33	1.64
7556360--7556422	22	2.9	22	90	0	99	39	0	26	33	1.57
7557913--7557952	19	2.1	19	90	0	62	25	20	12	42	1.86
7557917--7557959	19	2.3	19	83	0	50	25	30	13	30	1.94
7566687--7566719	16	2.1	16	94	0	57	39	3	21	36	1.69
7569440--7569564	39	3.2	39	88	2	153	29	4	19	47	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187