genome.fa.s15.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  33  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9569667--9569704	19	2.1	18	90	5	58	47	5	7	39	1.55
9570467--9570571	41	2.6	41	85	0	147	24	20	27	27	1.99
9571950--9572000	26	2.0	26	88	0	75	33	15	29	21	1.94
9573171--9573376	62	3.3	63	73	17	198	39	3	5	51	1.43
9579779--9579821	21	2.0	21	82	8	52	20	37	0	41	1.53
9580102--9580149	19	2.6	19	81	15	57	27	25	0	47	1.52
9581260--9581337	32	2.4	32	76	0	84	23	25	7	43	1.80
9585758--9585835	32	2.4	32	86	0	102	24	24	5	46	1.73
9597851--9597880	15	2.0	15	93	0	51	56	6	16	20	1.62
9597914--9597959	24	1.9	24	86	0	65	30	13	10	45	1.77
9599963--9600007	23	2.0	22	82	4	54	40	4	17	37	1.70
9603217--9603442	111	2.0	111	100	0	452	39	16	10	33	1.83
9606832--9606930	20	5.0	20	72	2	74	9	25	21	44	1.81
9608709--9608757	9	5.4	9	90	0	80	40	22	12	24	1.88
9619277--9619316	19	2.1	19	90	0	62	30	20	0	50	1.49
9619505--9619675	45	3.9	45	89	3	249	38	21	21	18	1.93
9619505--9619675	89	1.9	88	89	5	265	38	21	21	18	1.93
9619858--9619944	40	2.2	40	83	8	106	40	19	8	32	1.81
9622246--9622294	25	2.0	25	100	0	98	28	24	12	34	1.91
9624863--9624912	19	2.8	18	77	19	59	66	8	4	22	1.35
9624964--9625000	18	2.1	18	94	0	65	62	2	5	29	1.31
9624969--9625000	9	3.6	9	91	0	55	65	0	6	28	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9631827--9631954	37	3.4	37	80	6	125	28	17	17	37	1.92
9642530--9642576	21	2.3	21	96	3	87	46	12	2	38	1.54
9643753--9643784	15	2.1	15	94	0	55	68	9	6	15	1.36
9648101--9648145	20	2.1	22	84	12	58	13	11	8	66	1.44
9652561--9652599	15	2.8	13	82	14	51	43	5	12	38	1.65
9652857--9653056	35	5.8	34	83	3	231	20	23	18	38	1.94
9652857--9653056	69	2.9	69	90	0	310	20	23	18	38	1.94
9656831--9656860	14	2.1	14	93	0	51	20	10	40	30	1.85
9657858--9657887	14	2.1	14	100	0	60	26	0	20	53	1.46
9657962--9658014	25	2.2	24	82	3	61	20	3	1	73	1.08
9662477--9662515	15	2.6	16	84	12	55	51	2	0	46	1.14
9662506--9662545	19	2.3	18	87	12	57	55	2	0	42	1.13
9663224--9663253	14	2.1	14	100	0	60	56	13	0	30	1.37
9670676--9670702	2	13.5	2	100	0	54	0	48	0	51	1.00
9676357--9676400	23	1.9	22	82	17	54	36	25	0	38	1.56
9676499--9676685	51	3.7	50	78	7	207	31	27	17	24	1.97
9676497--9676681	101	1.8	101	88	3	282	31	27	17	23	1.97
9679736--9679846	48	2.3	48	85	1	161	36	24	15	24	1.94
9680884--9680910	12	2.2	12	100	0	54	74	0	0	25	0.83
9681118--9681143	12	2.2	12	100	0	52	65	0	0	34	0.93
9686328--9686361	13	2.6	13	85	0	50	41	38	0	20	1.53
9686463--9686538	9	8.4	9	86	0	107	26	7	22	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9693621--9693651	9	3.4	9	90	0	53	25	12	22	38	1.90
9693706--9693742	9	4.1	9	92	0	65	45	13	10	29	1.77
9700990--9701044	9	5.6	10	75	12	51	63	1	3	30	1.22
9701312--9701336	13	1.9	13	100	0	50	32	4	24	40	1.73
9703541--9703664	48	2.6	47	83	3	151	28	11	19	41	1.86
9703543--9703664	23	5.2	23	85	3	163	27	11	19	40	1.86
9709980--9710006	13	2.1	13	100	0	54	29	0	22	48	1.51
9711114--9711240	43	2.9	42	76	10	114	24	18	24	33	1.97
9712219--9712292	23	3.2	23	86	0	94	25	9	20	44	1.81
9719035--9719061	13	2.1	13	100	0	54	29	0	22	48	1.51
9720169--9720295	43	2.9	42	76	10	114	24	18	24	33	1.97
9721274--9721347	23	3.2	23	86	0	94	25	9	20	44	1.81
9725250--9725312	32	2.0	32	84	6	85	50	0	4	44	1.23
9725340--9725420	3	27.3	3	83	12	105	62	3	0	33	1.12
9737532--9737630	51	1.9	52	87	2	146	36	11	26	26	1.90
9742501--9742525	7	3.6	7	100	0	50	88	0	12	0	0.53
9743311--9743391	29	2.7	29	75	11	83	60	2	2	34	1.23
9743321--9743387	30	2.3	28	84	7	80	62	1	1	34	1.13
9743341--9743425	39	2.2	38	83	12	102	63	2	2	31	1.20
9743623--9743686	19	3.4	19	78	10	69	28	7	1	62	1.32
9743623--9743686	18	3.4	18	80	10	67	28	7	1	62	1.32
9743747--9743801	10	5.6	10	76	2	58	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9743917--9744181	85	3.1	85	80	5	284	36	10	14	38	1.80
9749862--9750056	42	4.6	43	80	4	191	34	26	13	25	1.93
9750405--9750491	43	2.0	43	88	0	129	44	10	11	33	1.74
9754829--9755175	41	8.5	41	92	0	552	29	29	19	21	1.97
9759226--9759268	18	2.4	18	88	0	59	18	27	9	44	1.80
9759509--9759563	21	2.6	21	80	5	58	30	40	18	10	1.85
9759525--9759570	21	2.2	21	88	0	65	28	39	26	6	1.81
9762849--9763263	126	3.3	126	91	0	659	27	21	18	32	1.96
9763302--9763575	96	2.9	95	82	3	345	41	16	3	38	1.66
9763649--9763686	6	6.3	6	93	0	67	36	44	0	18	1.50
9770467--9771700	414	3.0	414	98	1	2348	38	12	13	35	1.82
9775337--9775475	40	3.5	41	76	9	137	29	17	22	30	1.97
9780555--9781161	202	3.0	202	96	0	1106	38	21	14	25	1.92
9783103--9783144	18	2.3	18	87	0	57	40	45	2	11	1.54
9783249--9783344	27	3.6	27	89	0	138	27	9	22	40	1.85
9783249--9783360	9	12.4	9	81	7	111	27	8	21	42	1.81
9787962--9788238	68	4.1	68	83	2	342	24	20	17	38	1.93
9792671--9792721	26	1.9	26	84	11	68	25	11	5	56	1.57
9794350--9794390	19	2.2	19	86	0	55	41	19	9	29	1.83
9798365--9798404	15	2.7	15	88	3	55	45	5	0	50	1.23
9804731--9804785	25	2.2	24	83	3	65	32	18	27	21	1.96
9810362--9810652	43	6.8	43	81	2	316	29	28	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9810375--9810646	129	2.1	129	84	3	359	29	27	19	22	1.98
9811548--9811572	2	12.5	2	100	0	50	52	48	0	0	1.00
9816392--9816686	41	7.2	41	75	5	218	32	24	21	22	1.98
9816392--9816686	82	3.6	82	81	5	328	32	24	21	22	1.98
9816392--9816684	123	2.4	124	77	3	293	32	24	20	22	1.98
9816636--9816716	41	2.0	41	85	0	108	28	29	18	23	1.98
9816771--9816859	40	2.3	39	76	5	90	21	25	22	30	1.99
9816896--9816921	12	2.2	12	100	0	52	46	30	15	7	1.74
9821867--9822287	208	2.0	211	97	1	794	27	26	15	29	1.96
9833297--9833387	45	2.0	46	91	2	148	58	0	4	37	1.18
9844821--9844894	23	3.2	23	84	3	105	22	18	28	29	1.98
9846072--9846211	49	2.9	49	91	0	217	26	15	25	32	1.95
9849619--9849656	20	1.9	20	94	0	67	42	18	28	10	1.83
9852001--9852293	29	9.9	29	79	10	299	39	10	25	23	1.88
9851973--9852163	89	2.2	88	88	2	276	39	11	24	24	1.88
9852004--9852293	118	2.4	118	90	1	438	38	11	26	23	1.88
9854857--9854910	19	2.8	19	97	0	99	33	11	20	35	1.88
9854857--9854919	19	3.2	20	88	11	94	34	9	20	34	1.85
9857367--9857394	12	2.3	12	100	0	56	17	25	32	25	1.97
9863039--9863671	88	7.2	88	92	0	1005	25	23	26	23	2.00
9863643--9864056	44	9.4	44	85	3	512	31	13	24	30	1.93
9864401--9864456	21	2.8	19	84	10	85	35	10	17	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9870702--9870775	27	2.8	25	80	13	87	21	27	17	33	1.96
9874892--9874922	5	6.2	5	100	0	62	0	19	0	80	0.71
9882650--9882747	41	2.4	40	93	3	160	28	19	21	30	1.97
9882650--9882795	41	3.6	41	80	5	154	26	19	23	29	1.99
9893314--9893357	20	2.2	20	91	0	70	18	29	11	40	1.85
9893345--9893408	20	3.2	20	70	12	60	17	28	15	39	1.90
9898256--9898927	334	2.0	334	97	0	1281	29	7	23	39	1.82
9901865--9901890	12	2.2	12	100	0	52	7	15	30	46	1.74
9901879--9902006	40	3.2	40	83	6	145	32	21	25	21	1.98
9902070--9902273	41	5.0	41	88	0	300	19	22	28	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187