genome.fa.s15.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  52  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15424663--15424692	15	1.9	16	93	6	53	33	33	0	33	1.58
15432707--15432753	15	3.2	15	71	17	53	53	4	8	34	1.51
15446172--15446200	6	4.8	6	100	0	58	17	48	17	17	1.82
15450772--15450901	64	2.0	65	92	1	217	23	18	30	26	1.98
15451609--15451686	37	2.1	38	95	4	142	30	25	8	34	1.87
15455096--15455168	25	2.8	25	79	4	83	19	15	19	46	1.84
15455665--15455718	23	2.4	22	75	12	56	29	5	24	40	1.77
15458690--15458720	9	3.4	9	90	0	53	25	12	22	38	1.90
15458774--15458819	9	5.1	9	91	0	74	43	13	13	30	1.81
15459033--15459092	30	2.0	31	86	3	86	20	40	0	40	1.52
15461579--15461616	13	2.9	14	88	7	53	5	13	5	76	1.13
15462330--15462390	15	4.1	15	73	10	54	24	3	8	63	1.37
15473392--15473419	14	2.0	14	100	0	56	57	7	21	14	1.61
15474650--15474805	49	3.3	49	71	12	155	30	26	23	18	1.98
15474790--15474946	49	3.2	49	71	7	174	34	23	18	23	1.96
15474595--15475000	98	4.2	95	87	5	484	32	24	20	22	1.98
15474839--15474995	49	3.2	49	71	7	174	31	21	21	24	1.98
15474598--15475064	98	4.9	98	85	5	395	31	24	21	23	1.98
15475610--15475647	13	2.9	14	88	7	53	5	13	5	76	1.13
15480926--15481073	74	2.0	73	97	1	278	45	6	12	36	1.66
15483577--15483610	18	1.9	18	88	5	52	35	32	26	5	1.81
15492580--15492776	97	2.0	97	91	1	315	22	9	21	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15497006--15497077	17	4.4	17	75	20	66	40	0	2	56	1.13
15497022--15497200	6	30.7	6	65	23	55	40	2	3	53	1.32
15497022--15497200	11	15.3	12	65	23	55	40	2	3	53	1.32
15502557--15504180	812	2.0	812	100	0	3248	34	12	12	39	1.82
15509164--15509511	40	8.7	40	97	0	642	30	20	27	22	1.98
15517248--15517457	40	5.3	39	87	5	233	24	21	28	25	1.99
15517195--15517457	120	2.2	120	81	4	300	25	21	27	25	1.99
15517248--15517492	80	3.1	80	81	3	228	25	21	28	24	1.99
15524121--15524162	20	2.2	19	83	12	50	35	14	4	45	1.66
15524342--15524589	41	6.1	41	79	4	254	36	26	19	17	1.94
15524342--15524598	82	3.2	80	81	6	286	36	26	19	17	1.94
15528309--15528476	51	3.3	51	96	0	309	32	14	25	28	1.94
15532805--15532841	12	3.1	12	92	0	56	10	21	40	27	1.86
15536650--15536696	24	2.0	24	87	8	69	31	10	0	57	1.33
15536650--15536687	12	3.2	12	82	10	51	34	10	0	55	1.34
15537128--15537162	18	1.9	18	88	0	52	42	2	5	48	1.41
15543127--15544592	44	32.9	44	86	3	1864	32	13	24	30	1.93
15543125--15544565	177	8.1	176	86	3	1898	31	13	24	30	1.93
15546032--15546078	24	2.0	24	87	8	69	31	10	0	57	1.33
15546032--15546069	12	3.2	12	82	10	51	34	10	0	55	1.34
15546270--15546302	8	4.1	8	88	11	50	33	3	0	63	1.10
15548464--15548496	5	6.8	5	93	6	59	39	60	0	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15548459--15548496	15	2.6	14	88	8	58	39	57	2	0	1.12
15571823--15571870	21	2.3	21	75	7	53	70	2	25	2	1.09
15578059--15578103	21	2.3	18	76	20	54	53	17	6	22	1.67
15578064--15578105	21	2.0	21	95	0	75	54	21	4	19	1.62
15578657--15578753	48	2.0	49	84	6	126	44	7	16	31	1.75
15580916--15580975	30	2.0	30	100	0	120	46	20	6	26	1.75
15589942--15589974	11	2.8	12	86	4	50	33	3	12	51	1.54
15592427--15592530	25	4.2	26	77	11	110	28	20	25	25	1.99
15592422--15592519	50	1.9	51	83	6	128	32	18	24	24	1.97
15592486--15592645	25	6.4	25	68	15	80	37	18	22	21	1.94
15597546--15597579	17	2.0	17	100	0	68	35	11	29	23	1.90
15599400--15599570	41	4.1	41	96	0	306	28	20	27	23	1.99
15606042--15606110	24	2.8	25	87	10	99	33	23	23	20	1.97
15606092--15606186	50	1.9	49	84	2	127	34	22	24	18	1.96
15607819--15607949	60	2.2	60	80	11	148	40	3	3	52	1.35
15612533--15612766	118	2.0	118	94	0	414	29	17	17	35	1.93
15616053--15616086	11	3.2	11	87	4	52	23	26	17	32	1.97
15620154--15620192	20	2.0	20	95	5	71	30	5	17	46	1.70
15630823--15630876	25	2.2	25	83	6	65	24	12	11	51	1.72
15633526--15633568	21	2.0	21	100	0	86	58	9	23	9	1.58
15637394--15638490	292	3.8	292	88	3	1566	42	13	18	25	1.87
15641939--15642024	43	2.0	42	93	2	145	27	19	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15647092--15647231	41	3.4	41	89	0	217	27	19	27	25	1.99
15651717--15651776	25	2.3	26	80	13	70	35	25	21	18	1.96
15651734--15651823	25	3.6	25	77	1	92	38	18	22	20	1.93
15651897--15651987	26	3.6	26	76	12	84	34	21	27	16	1.95
15654957--15655064	43	2.4	45	87	4	166	31	15	21	31	1.94
15661078--15661143	31	2.2	30	83	5	80	36	16	16	30	1.91
15678661--15678819	77	2.1	76	87	1	228	28	24	19	27	1.99
15682802--15682854	17	3.1	17	81	13	63	73	5	7	13	1.23
15682802--15682853	18	2.9	18	83	11	54	73	5	7	13	1.24
15692877--15693041	81	2.0	81	92	0	276	28	24	10	35	1.89
15695980--15696018	12	3.2	12	82	17	53	43	0	2	53	1.14
15695991--15696081	17	5.4	17	69	23	57	41	2	3	52	1.30
15695974--15696049	11	6.8	11	72	21	52	42	2	2	52	1.29
15696887--15698460	578	2.7	578	93	0	2695	29	17	17	35	1.93
15707446--15707472	11	2.5	11	100	0	54	40	0	0	59	0.98
15709931--15709969	19	2.0	20	90	5	62	53	7	10	28	1.62
15711312--15711397	43	2.0	42	90	2	136	27	22	2	47	1.63
15712282--15712328	3	15.3	3	86	4	67	36	2	0	61	1.08
15713517--15713565	21	2.3	21	89	0	71	14	26	28	30	1.95
15714904--15714951	20	2.4	20	85	0	69	54	0	8	37	1.31
15716120--15716152	15	2.1	16	88	5	50	18	3	3	75	1.06
15716355--15716516	44	3.6	45	81	9	163	24	24	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15716487--15716595	40	2.6	41	81	7	130	28	23	22	24	2.00
15716781--15716918	45	3.1	44	69	15	106	23	23	22	29	1.99
15716605--15716850	132	1.8	132	80	3	296	28	23	17	30	1.97
15718123--15718162	14	2.9	14	85	14	64	15	20	0	65	1.28
15718123--15718178	28	2.0	28	86	13	80	12	21	1	64	1.36
15719338--15719403	25	2.6	25	78	9	62	57	7	13	21	1.61
15721788--15722161	187	2.0	187	95	1	669	28	29	14	27	1.96
15724687--15724734	16	2.9	16	76	14	53	52	4	6	37	1.46
15724682--15724850	50	3.4	47	68	20	105	52	3	8	35	1.50
15724760--15724807	20	2.4	20	85	0	69	54	0	8	37	1.31
15724756--15724812	20	2.6	21	78	13	62	52	0	8	38	1.33
15726111--15726143	15	2.1	16	94	5	59	15	3	6	75	1.11
15729061--15729101	18	2.3	18	95	0	73	41	21	9	26	1.84
15729061--15729101	9	4.6	9	90	0	64	41	21	9	26	1.84
15729989--15730267	113	2.5	113	85	2	348	41	17	11	29	1.85
15729989--15730267	56	5.0	57	81	3	298	41	17	11	29	1.85
15731071--15731114	18	2.4	18	88	0	61	11	4	43	40	1.61
15737878--15737922	21	2.1	21	87	0	63	40	20	0	40	1.52
15745107--15745167	24	2.5	24	78	5	70	32	18	29	19	1.95
15745702--15745746	10	4.4	10	83	5	54	42	13	0	44	1.43
15745702--15745746	21	2.2	20	84	4	54	42	13	0	44	1.43
15746783--15746826	23	1.9	22	82	17	54	36	25	0	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15746871--15746964	45	2.1	45	91	0	152	30	23	19	26	1.98
15746966--15747156	51	3.8	50	77	6	215	31	28	15	23	1.95
15746969--15747152	101	1.8	101	90	3	298	32	27	16	23	1.96
15748279--15748319	21	2.0	21	90	0	64	36	19	2	41	1.65
15752583--15752631	12	3.8	13	84	10	57	22	2	4	71	1.13
15752876--15752900	6	4.2	6	100	0	50	16	0	0	84	0.63
15753371--15753407	13	2.8	13	92	8	58	27	5	21	45	1.73
15757142--15757166	13	1.9	13	100	0	50	40	28	8	24	1.83
15764172--15764206	3	11.7	3	100	0	70	31	0	0	68	0.90
15764167--15764244	30	2.8	28	74	24	67	26	5	0	67	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187