genome.fa.s15.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  53  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15773747--15773771	13	1.9	13	100	0	50	84	0	0	16	0.63
15777725--15777755	14	2.2	14	94	0	53	19	6	12	61	1.53
15777785--15777847	30	2.1	30	93	0	108	25	3	14	57	1.52
15784668--15784728	25	2.4	25	86	5	70	29	21	27	21	1.98
15784681--15784870	25	7.6	25	68	14	81	34	19	26	19	1.96
15795341--15795499	43	3.7	42	79	4	158	32	25	16	24	1.96
15796577--15796603	13	2.1	13	100	0	54	48	22	0	29	1.51
15809279--15809338	31	1.9	31	93	0	102	36	16	8	38	1.79
15809672--15809743	28	2.6	28	93	0	117	36	11	13	38	1.81
15810743--15810815	37	2.0	36	89	2	110	27	28	16	27	1.97
15818802--15818947	40	3.7	40	80	3	159	23	21	20	34	1.97
15818887--15818947	20	3.0	20	65	0	59	22	21	22	32	1.98
15819191--15819228	11	3.7	10	83	16	51	31	10	28	28	1.90
15820258--15820347	44	2.0	44	91	0	144	42	7	3	46	1.49
15822388--15822431	19	2.3	18	85	11	61	45	0	0	54	0.99
15823867--15823930	19	3.4	19	87	8	87	57	4	0	37	1.19
15823952--15823995	20	2.2	19	88	8	61	70	2	0	27	0.99
15823947--15824004	11	5.6	10	76	12	55	70	1	0	27	0.97
15823956--15824003	20	2.4	19	80	10	60	70	2	0	27	0.98
15827133--15827205	37	1.9	37	84	13	96	32	23	1	42	1.63
15827282--15827369	45	2.0	45	95	0	158	35	22	15	26	1.94
15830583--15830608	12	2.2	12	100	0	52	61	0	23	15	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15841922--15841975	25	2.2	25	86	0	72	31	14	12	40	1.84
15855278--15855587	141	2.2	141	85	2	399	31	21	11	34	1.89
15855616--15855668	24	2.2	24	84	15	74	30	24	9	35	1.87
15855583--15855924	140	2.4	141	83	7	394	30	21	10	36	1.88
15855404--15855786	199	1.9	198	82	7	481	31	21	10	37	1.87
15855779--15855996	58	3.6	59	71	21	141	32	21	11	35	1.88
15863063--15863110	23	2.1	23	84	7	62	20	4	33	41	1.72
15863745--15863854	44	2.5	45	83	4	143	30	20	18	30	1.96
15875697--15875742	21	2.2	21	96	0	83	26	17	13	43	1.85
15879091--15879151	13	4.7	13	87	0	59	45	3	19	31	1.66
15879092--15879151	26	2.3	26	82	5	68	45	3	20	31	1.67
15879105--15879158	26	2.1	26	89	6	83	40	1	20	37	1.63
15879105--15879158	13	4.2	13	88	4	74	40	1	20	37	1.63
15882311--15882361	21	2.4	21	83	6	59	15	25	23	35	1.94
15890142--15890186	20	2.2	19	84	11	54	35	22	4	37	1.74
15891493--15891547	28	1.9	29	82	17	71	45	7	5	41	1.55
15894471--15894599	40	3.2	40	81	6	120	33	21	23	21	1.97
15894486--15894565	40	2.0	40	90	4	126	33	23	21	21	1.97
15894488--15894615	40	3.2	39	81	3	114	32	21	22	22	1.98
15894591--15895018	113	3.9	113	82	6	499	26	22	22	27	1.99
15894927--15895082	66	2.4	66	85	2	217	28	22	21	27	1.99
15895055--15895167	42	2.7	41	86	8	165	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15895091--15895358	113	2.4	113	83	3	351	27	22	22	27	1.99
15895364--15895520	65	2.4	64	86	5	226	27	22	22	27	1.99
15895438--15895677	114	2.2	109	82	10	287	28	22	22	26	1.99
15896073--15896105	14	2.3	15	94	5	59	30	0	33	36	1.58
15896163--15896284	61	2.0	63	88	3	185	31	0	20	47	1.56
15896274--15896333	14	4.3	13	81	12	66	25	0	41	33	1.55
15896164--15896298	63	2.2	61	85	5	173	31	0	22	45	1.57
15896274--15896363	7	12.7	7	71	2	54	23	1	42	33	1.62
15896268--15896333	28	2.4	28	87	5	89	25	0	40	33	1.56
15898328--15898405	39	2.0	39	97	0	147	38	5	24	32	1.77
15899966--15900045	36	2.2	36	95	0	142	25	12	15	47	1.80
15900583--15900874	43	6.8	43	84	1	345	25	18	29	26	1.98
15900587--15900867	128	2.2	129	84	1	350	25	18	29	26	1.98
15902177--15902214	14	2.7	14	87	0	58	34	7	18	39	1.80
15903565--15903641	35	2.2	36	88	4	120	51	15	3	28	1.61
15905228--15905299	37	1.9	37	100	0	144	40	15	5	38	1.70
15913640--15913679	11	3.6	11	82	0	53	67	17	12	2	1.33
15914939--15915752	243	3.5	228	75	13	605	44	7	10	36	1.68
15922969--15923146	27	6.6	27	82	3	196	26	15	28	29	1.96
15922970--15923125	82	1.9	81	89	3	242	26	16	28	28	1.97
15922966--15923146	82	2.2	81	84	2	238	27	16	27	29	1.97
15935278--15935455	40	4.5	40	80	6	193	33	25	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15935314--15935456	78	1.8	77	86	4	207	33	25	16	24	1.96
15936322--15936389	14	5.0	14	85	7	79	0	26	0	73	0.83
15936346--15936423	5	15.8	5	77	17	83	0	17	5	76	0.96
15936346--15936423	9	7.9	10	78	17	83	0	17	5	76	0.96
15939179--15939204	3	8.7	3	100	0	52	0	30	0	69	0.89
15942629--15942669	12	3.1	14	80	16	52	0	29	0	70	0.87
15942653--15942711	5	11.8	5	73	20	52	0	18	6	74	1.03
15943177--15943299	44	2.8	43	89	7	194	45	2	24	27	1.66
15943785--15943811	9	3.0	9	100	0	54	11	0	44	44	1.39
15948567--15948705	40	3.5	40	77	6	149	26	17	25	30	1.98
15960097--15960502	51	8.0	51	83	0	470	32	10	19	37	1.86
15960097--15960502	153	2.7	153	85	0	551	32	10	19	37	1.86
15967720--15967790	36	2.0	36	97	0	133	35	8	21	35	1.84
15974630--15974669	21	1.9	21	89	0	62	60	5	2	32	1.32
15981571--15981609	14	2.6	15	88	8	53	46	0	2	51	1.14
15982031--15983418	694	2.0	694	100	0	2776	37	14	14	32	1.87
15983569--15983613	21	2.1	21	91	0	72	11	13	28	46	1.77
15983688--15983991	43	7.1	43	86	2	337	30	29	16	23	1.96
15983688--15983982	85	3.4	86	85	2	387	30	29	16	23	1.96
15983688--15983982	87	3.4	86	85	2	387	30	29	16	23	1.96
15983728--15983997	130	2.1	128	84	2	344	31	29	15	24	1.96
15984967--15985391	192	2.2	194	82	5	506	42	19	9	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15986029--15986205	73	2.4	72	86	0	228	22	22	24	31	1.99
15986562--15986591	14	2.1	14	100	0	60	36	13	20	30	1.90
15989229--15989278	12	4.1	12	72	23	50	48	0	2	50	1.12
15989234--15989274	21	2.0	21	85	4	57	46	0	2	51	1.14
15989317--15989424	37	3.0	33	74	16	90	51	3	2	41	1.34
15989323--15989377	25	2.2	25	81	12	60	49	5	1	43	1.36
16006398--16006434	15	2.4	15	90	4	56	37	5	0	56	1.22
16006454--16006505	26	2.0	25	82	10	61	50	0	1	48	1.12
16010883--16010943	32	1.9	32	83	9	81	55	0	9	34	1.33
16010896--16010950	22	2.4	24	84	6	69	60	0	7	32	1.24
16017090--16017204	43	2.7	42	78	4	122	30	25	16	27	1.97
16019468--16019684	115	1.9	115	85	1	301	24	22	25	27	2.00
16020535--16020570	5	7.4	5	90	6	56	19	2	0	77	0.88
16020536--16020566	14	2.2	14	94	0	53	19	3	0	77	0.90
16023957--16023986	14	2.1	14	100	0	60	43	0	13	43	1.43
16027324--16027353	14	2.1	14	100	0	60	43	0	13	43	1.43
16028356--16028424	24	2.9	24	75	0	75	21	5	37	34	1.78
16029991--16030184	96	2.0	96	94	0	343	23	12	26	37	1.90
16030218--16030263	19	2.3	20	85	3	67	32	6	6	54	1.52
16036813--16036843	16	1.9	16	93	0	53	6	16	0	77	0.97
16039645--16039921	46	6.0	46	93	0	428	28	25	8	37	1.86
16043045--16043087	22	2.0	21	86	13	61	16	4	39	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16044685--16044710	3	8.7	3	100	0	52	34	0	65	0	0.93
16048320--16048791	69	6.8	69	82	0	523	37	22	19	20	1.94
16048320--16048791	207	2.3	207	83	1	597	37	22	19	20	1.94
16052176--16052212	3	12.3	3	100	0	74	64	0	0	35	0.94
16056568--16056628	31	2.0	31	90	6	97	45	0	8	45	1.33
16056569--16056636	31	2.2	31	86	5	93	45	1	8	44	1.44
16057857--16057984	50	2.6	51	77	7	147	32	21	23	21	1.98
16057857--16057993	49	2.7	51	77	6	156	31	21	24	22	1.98
16061130--16061257	50	2.6	51	77	7	147	32	21	23	21	1.98
16061130--16061266	49	2.7	51	77	6	156	31	21	24	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187