genome.fa.s15.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  35  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10201545--10201930	44	8.8	44	71	8	266	29	19	25	24	1.99
10201486--10201930	88	5.1	88	72	8	287	28	20	25	25	1.99
10201545--10201978	132	3.3	131	92	0	697	29	20	25	24	1.99
10201616--10201980	88	4.2	86	69	10	211	29	20	24	25	1.99
10201968--10202209	44	5.7	43	71	10	149	31	19	20	28	1.97
10201968--10202218	129	2.0	126	88	2	367	31	20	19	27	1.97
10202322--10202539	44	4.9	44	80	8	226	30	21	21	27	1.98
10204152--10204202	20	2.6	20	77	20	54	9	15	0	74	1.06
10204316--10204361	21	2.2	21	88	0	65	36	6	2	54	1.39
10204323--10204366	17	2.6	17	82	7	54	34	4	0	61	1.16
10204323--10204371	21	2.4	21	89	3	73	34	4	0	61	1.15
10204323--10204367	19	2.2	20	88	7	65	35	4	0	60	1.17
10206175--10206250	23	3.3	23	84	0	107	22	19	27	30	1.98
10211360--10211395	16	2.2	16	95	0	63	33	33	8	25	1.86
10213083--10213107	3	8.3	3	100	0	50	68	0	0	32	0.90
10214247--10214381	67	2.0	67	92	0	225	29	33	16	20	1.95
10220399--10220440	17	2.4	17	84	4	57	23	11	9	54	1.66
10221541--10221640	51	2.0	50	90	2	155	21	25	27	27	1.99
10221654--10221746	42	2.2	42	88	7	143	27	34	13	23	1.93
10221651--10221880	85	2.7	84	75	9	216	29	31	14	24	1.95
10221615--10221861	43	5.8	42	76	11	191	27	30	16	25	1.96
10222235--10222326	21	4.4	21	83	0	76	4	40	17	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10222297--10222463	66	2.5	66	84	3	203	13	28	17	40	1.88
10227900--10227953	16	3.2	16	81	5	63	37	0	16	46	1.48
10227900--10227953	9	6.4	9	73	16	53	37	0	16	46	1.48
10227905--10227987	34	2.5	34	82	3	89	40	1	13	44	1.51
10227900--10228036	25	5.5	24	68	18	66	41	1	13	43	1.53
10228023--10228067	22	2.0	22	95	0	81	42	0	11	46	1.39
10227989--10228838	31	28.2	31	82	12	936	39	2	10	47	1.52
10228079--10228124	22	2.1	22	95	0	83	41	0	10	47	1.38
10228145--10228241	22	4.6	22	70	21	73	39	1	11	48	1.46
10228253--10228297	22	2.0	22	95	0	81	42	0	11	46	1.39
10228744--10228789	22	2.1	22	95	0	83	41	0	10	47	1.38
10228751--10228804	22	2.3	22	87	9	72	40	1	11	46	1.50
10231685--10231754	35	2.0	36	86	8	99	37	0	7	55	1.27
10234048--10234074	14	1.9	14	100	0	54	44	14	3	37	1.63
10234338--10234375	15	2.5	15	86	0	58	36	42	0	21	1.53
10234457--10234520	24	2.7	24	77	15	69	50	3	3	43	1.33
10234895--10235213	41	7.8	42	80	5	226	35	24	24	15	1.94
10234895--10235213	82	3.9	79	82	5	284	35	24	24	15	1.94
10235270--10235368	40	2.5	40	80	6	112	21	28	20	30	1.98
10237236--10237325	22	3.9	24	80	10	98	56	2	6	34	1.38
10241370--10241407	20	1.9	20	88	0	58	44	0	7	47	1.32
10249846--10249874	13	2.1	14	93	6	51	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10250304--10250377	32	2.3	31	86	9	96	33	0	0	66	0.92
10250304--10250377	16	4.7	15	78	17	62	33	0	0	66	0.92
10257001--10257037	17	2.1	19	85	10	51	27	5	0	67	1.12
10257615--10257648	16	2.1	16	89	10	52	79	11	2	5	1.02
10257698--10257765	27	2.5	27	85	0	82	25	22	38	14	1.92
10257820--10257889	4	17.5	4	71	26	51	71	0	27	1	0.94
10257814--10257896	10	8.3	10	74	15	64	69	0	28	1	0.96
10257834--10257896	14	4.4	14	80	11	74	69	0	30	0	0.88
10257831--10257912	34	2.4	34	82	8	96	69	0	30	0	0.89
10257921--10257991	24	2.9	24	76	17	74	70	0	28	1	0.96
10258497--10258531	18	1.9	18	94	0	61	65	0	8	25	1.21
10258671--10258718	18	2.7	18	87	6	62	20	0	8	70	1.12
10258738--10258848	52	2.1	53	81	1	125	49	7	1	41	1.41
10258756--10258900	28	5.5	27	79	13	169	40	8	2	48	1.45
10258756--10258900	51	2.8	53	88	5	217	40	8	2	48	1.45
10259889--10260321	216	2.0	216	99	0	848	24	21	22	30	1.99
10263828--10263865	18	2.1	18	90	0	58	15	44	5	34	1.69
10263831--10263872	18	2.3	18	83	0	57	21	47	2	28	1.63
10264614--10264642	3	9.7	3	100	0	58	65	0	0	34	0.93
10265096--10265149	28	1.9	28	96	0	99	51	0	5	42	1.25
10265096--10265164	28	2.5	28	90	4	97	49	1	7	42	1.39
10265641--10265681	18	2.2	19	83	12	50	26	4	4	63	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10276471--10276691	110	2.0	110	97	0	415	36	15	11	36	1.84
10277583--10277611	15	1.9	15	100	0	58	55	17	0	27	1.42
10278401--10278442	22	1.9	22	85	9	59	66	11	7	14	1.43
10284287--10284481	25	8.0	24	68	15	87	20	26	21	32	1.97
10284426--10284503	25	3.1	25	79	1	84	23	25	21	29	1.99
10285447--10285514	30	2.3	30	94	0	127	23	27	27	20	1.99
10291926--10292009	22	3.5	22	69	17	69	53	11	1	33	1.45
10291926--10292027	50	2.0	50	100	0	204	50	13	1	33	1.53
10292870--10292916	21	2.2	21	88	7	69	55	4	8	31	1.49
10295856--10295957	34	3.0	34	78	7	116	31	24	24	19	1.98
10300304--10300371	30	2.3	31	82	12	81	32	26	1	39	1.65
10300432--10300470	11	3.3	12	86	13	55	23	0	0	76	0.78
10305351--10305459	55	2.0	55	96	0	200	31	13	23	31	1.94
10314358--10314429	24	3.0	22	73	16	56	38	0	0	61	0.96
10315555--10315583	14	2.1	14	93	6	51	27	0	6	65	1.18
10315582--10315627	23	2.0	23	100	0	92	34	0	17	47	1.48
10315583--10315625	13	3.5	13	81	18	65	34	0	16	48	1.46
10321040--10321093	25	2.2	25	86	0	72	20	24	20	35	1.96
10321802--10321856	27	2.0	27	96	0	101	30	3	27	38	1.74
10334994--10335080	40	2.2	40	83	8	106	45	10	5	37	1.62
10335277--10335347	13	5.5	13	91	0	97	28	5	26	39	1.79
10340974--10341043	21	3.4	21	76	11	65	17	17	18	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10341024--10341165	42	3.4	42	86	0	185	18	26	16	38	1.92
10341009--10341165	21	7.5	21	64	5	66	17	24	17	40	1.91
10342507--10342658	37	3.9	37	81	13	173	26	21	15	36	1.94
10342575--10342843	46	5.6	46	84	10	340	28	22	14	34	1.93
10342618--10342837	52	4.3	52	85	8	299	27	22	14	35	1.93
10342575--10342843	98	2.7	98	93	0	457	28	22	14	34	1.93
10362385--10362411	14	1.9	14	100	0	54	44	0	22	33	1.53
10368557--10368615	21	2.7	22	82	7	68	61	0	1	37	1.07
10373557--10373633	33	2.3	34	84	2	102	23	6	25	44	1.77
10374206--10374257	20	2.7	20	82	14	72	51	0	9	38	1.35
10379434--10379469	19	1.9	18	88	5	54	50	16	2	30	1.60
10382191--10382217	13	2.1	13	100	0	54	29	7	29	33	1.85
10391869--10391997	62	2.1	61	94	1	222	37	16	4	41	1.69
10392226--10392267	17	2.5	17	80	7	50	21	28	2	47	1.63
10395966--10396047	41	2.0	41	100	0	164	56	9	4	29	1.53
10402676--10402744	3	23.3	3	78	19	74	63	2	1	31	1.18
10410523--10410583	30	2.0	30	100	0	122	44	9	16	29	1.80
10420205--10420251	21	2.2	22	92	3	78	21	38	19	21	1.94
10423488--10423524	16	2.4	16	86	8	51	18	0	8	72	1.08
10430447--10430568	44	2.8	43	77	15	142	31	28	16	22	1.96
10441293--10441439	49	3.0	49	97	1	276	24	19	14	41	1.89
10449308--10449384	18	4.1	18	69	20	50	51	1	3	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10449954--10450008	27	2.1	27	86	3	76	40	0	38	21	1.54
10449926--10449997	37	2.0	36	89	7	112	38	0	44	16	1.48
10450067--10450103	9	4.1	9	85	0	56	29	8	13	48	1.71
10459195--10459251	24	2.4	25	85	5	73	31	19	29	19	1.96
10466923--10466966	23	1.9	23	86	9	63	38	15	6	38	1.75
10468561--10468592	15	2.1	15	100	0	64	28	9	31	31	1.88
10472651--10472679	6	4.8	6	100	0	58	34	17	0	48	1.47
10472907--10472995	40	2.3	39	82	3	106	33	12	5	48	1.64
10473484--10473516	17	2.1	16	88	11	50	36	18	3	42	1.66
10478832--10478865	14	2.4	14	90	9	52	58	0	8	32	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187