genome.fa.s15.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  118  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34963234--34963681	224	2.0	224	99	0	878	24	26	19	29	1.99
34968584--34968761	27	6.6	27	84	3	205	29	28	15	26	1.96
34968605--34968760	82	1.9	81	88	3	233	29	28	15	26	1.96
34970214--34970468	128	2.0	128	91	3	415	22	26	9	41	1.84
34975784--34976011	40	5.7	40	97	0	393	22	27	20	29	1.98
34978793--34978974	54	3.4	52	78	12	181	43	20	17	18	1.88
34978793--34978975	27	6.8	27	74	7	131	43	20	16	18	1.88
34978793--34978964	80	2.1	80	83	3	211	44	19	17	18	1.87
34979144--34979215	26	2.8	26	86	0	99	15	23	23	37	1.93
34979321--34979410	28	3.1	28	80	13	101	28	24	20	26	1.99
34979325--34979409	30	2.9	30	84	6	104	29	24	20	25	1.99
34979615--34979681	26	2.6	26	92	4	109	25	1	19	53	1.53
34982462--34982708	50	4.8	50	77	6	185	23	26	21	28	1.99
34984733--34984775	22	2.0	22	85	0	59	44	13	6	34	1.72
34984741--34985124	22	17.7	22	79	5	406	45	16	9	29	1.79
34984741--34985124	44	8.9	44	85	4	512	45	16	9	29	1.79
34984831--34985124	11	27.3	11	63	18	82	44	17	8	28	1.79
34984769--34985110	170	2.0	171	87	1	490	45	16	9	28	1.79
34985915--34986063	43	3.5	42	83	2	181	34	24	16	25	1.95
34985943--34986066	43	2.9	43	87	1	187	33	25	15	25	1.95
34987990--34988075	42	2.0	43	86	2	120	46	4	22	26	1.71
34989257--34989288	15	2.1	15	94	0	55	31	9	6	53	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34990943--34991012	29	2.4	30	85	2	88	17	24	14	44	1.85
34999866--35000088	29	7.6	29	76	13	147	22	22	13	41	1.88
34999867--35000086	60	3.7	60	75	11	186	23	23	13	40	1.89
34999987--35000110	29	4.3	29	88	0	158	27	24	9	38	1.86
35003120--35003152	16	2.0	17	88	5	50	60	3	18	18	1.49
35003329--35003573	29	8.4	29	84	3	262	37	15	26	21	1.93
35003301--35003597	87	3.4	87	83	4	341	37	15	25	22	1.93
35003381--35003597	58	3.7	58	89	2	337	38	16	24	21	1.93
35003301--35003612	29	10.8	29	80	0	230	36	15	25	23	1.93
35007710--35007844	25	5.5	24	74	5	108	31	22	21	24	1.98
35007710--35007819	49	2.2	49	87	6	159	31	20	22	24	1.98
35008615--35008643	14	2.1	14	100	0	58	27	6	20	44	1.77
35017954--35018048	25	3.8	25	78	2	93	28	24	21	26	1.99
35024335--35024468	67	2.0	67	95	0	241	39	7	18	34	1.79
35036074--35036101	14	2.0	14	100	0	56	57	0	7	35	1.26
35041882--35042059	27	6.6	27	81	6	164	30	27	15	26	1.96
35041903--35042058	82	1.9	81	84	6	208	30	27	16	26	1.96
35050069--35050245	27	6.5	27	78	6	144	29	28	15	25	1.96
35060199--35060232	14	2.3	15	90	5	52	17	26	2	52	1.58
35061946--35062038	17	5.9	17	71	14	83	38	5	5	50	1.48
35061939--35062056	30	3.9	30	71	14	107	37	5	5	50	1.51
35061939--35061991	13	3.8	13	77	18	52	33	7	3	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35061987--35062026	16	2.6	15	88	7	62	42	2	5	50	1.37
35061957--35062104	61	2.4	61	87	0	215	41	4	4	49	1.45
35062273--35062349	21	3.7	21	79	10	68	44	20	2	32	1.66
35062331--35062799	9	54.3	9	66	17	167	44	19	3	32	1.66
35062340--35062753	16	24.1	17	63	22	77	44	20	3	31	1.68
35062343--35062770	25	17.3	25	65	17	114	44	19	3	31	1.68
35062533--35062733	69	2.9	69	91	1	314	43	21	4	30	1.72
35062533--35062733	34	5.9	34	74	14	173	43	21	4	30	1.72
35065314--35065593	142	2.0	142	97	0	533	34	18	17	30	1.94
35066987--35067186	98	2.0	98	97	0	373	31	12	27	29	1.93
35067468--35067614	76	1.9	76	100	0	294	31	10	9	47	1.71
35068142--35068311	66	2.6	65	86	3	225	39	19	27	13	1.89
35068282--35068326	21	2.1	21	83	0	54	33	15	44	6	1.73
35068458--35068637	86	2.1	86	81	10	208	23	18	28	30	1.98
35068463--35068637	43	4.1	42	71	14	142	23	17	28	30	1.97
35073433--35073469	16	2.3	16	95	0	65	45	8	13	32	1.73
35076456--35076665	40	5.3	39	89	4	242	25	21	27	25	1.99
35076403--35076665	120	2.2	120	82	4	309	25	21	27	25	1.99
35076404--35076700	80	3.7	80	81	6	230	26	21	27	24	1.99
35079168--35079583	205	2.0	205	93	0	706	26	19	30	23	1.98
35084611--35084782	79	2.2	79	82	3	211	24	21	28	25	1.99
35084558--35084780	40	5.6	39	80	8	200	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35084638--35084815	79	2.2	80	81	2	198	24	21	28	24	1.99
35093966--35094022	22	2.7	19	77	20	51	64	0	15	19	1.28
35096140--35096181	19	2.4	18	84	11	52	71	0	21	7	1.09
35096299--35096334	17	2.1	17	100	0	72	44	0	16	38	1.48
35100607--35100900	151	1.9	151	89	0	453	27	29	17	26	1.97
35105866--35105894	5	5.8	5	100	0	58	0	17	0	82	0.66
35124912--35124955	22	2.0	22	86	0	61	59	6	2	31	1.36
35128452--35128511	31	2.0	31	83	9	79	51	10	3	35	1.52
35136226--35136269	22	2.0	22	81	0	52	56	11	2	29	1.46
35142085--35142121	19	1.9	19	88	0	56	18	18	0	62	1.34
35142538--35142669	66	2.0	66	83	5	169	23	20	20	35	1.96
35151538--35151634	38	2.5	37	78	11	104	51	4	2	42	1.32
35153450--35153519	27	2.6	27	79	4	79	30	40	15	14	1.87
35154116--35154148	12	2.9	12	86	13	52	9	6	9	75	1.18
35161012--35161043	16	2.0	16	93	0	55	25	15	0	59	1.36
35161264--35161487	101	2.2	101	77	7	231	31	26	15	26	1.96
35164838--35164934	30	3.2	30	75	2	106	28	15	26	28	1.96
35169382--35169429	20	2.4	20	67	0	51	33	18	27	20	1.96
35170596--35170664	28	2.5	27	83	6	84	36	4	1	57	1.27
35180747--35180811	31	2.1	30	85	2	85	26	21	3	49	1.64
35181233--35181266	7	4.9	7	89	10	52	41	0	0	58	0.98
35183725--35183795	16	4.4	16	87	0	97	39	5	23	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35184072--35184125	23	2.4	24	81	9	60	44	3	0	51	1.19
35186917--35186946	13	2.3	13	94	0	51	10	30	0	60	1.30
35189177--35189210	17	1.9	18	88	5	52	67	0	14	17	1.23
35191214--35191252	18	2.2	17	86	13	53	33	0	20	46	1.51
35191470--35191522	23	2.3	23	93	0	97	20	20	26	32	1.98
35191652--35191723	38	1.9	37	86	8	101	43	1	22	33	1.62
35200509--35200567	30	2.0	30	86	6	84	49	10	8	32	1.67
35201416--35201446	14	2.3	13	94	5	53	12	12	12	61	1.58
35210975--35211073	43	2.3	43	83	0	117	23	19	21	36	1.95
35218483--35219503	339	3.0	339	97	0	1943	32	8	23	35	1.86
35221150--35221656	40	12.7	40	99	0	1005	29	20	27	22	1.98
35229337--35229519	40	4.6	39	81	6	170	24	20	27	26	1.99
35229373--35229554	79	2.3	80	79	3	190	26	20	27	25	1.99
35242268--35242337	36	1.9	36	97	0	131	55	7	7	30	1.54
35242305--35242353	26	2.0	26	84	8	66	57	6	8	28	1.52
35247148--35247174	7	3.9	7	100	0	54	14	0	0	85	0.61
35248816--35248878	29	2.2	28	80	2	72	31	1	4	61	1.26
35256016--35256073	25	2.3	25	100	0	116	15	13	12	58	1.63
35259943--35260037	47	2.0	47	97	0	181	29	7	23	40	1.81
35259949--35260047	47	2.1	47	92	0	162	29	9	24	37	1.86
35260387--35260430	23	1.9	23	90	0	70	22	2	31	43	1.66
35264922--35264999	26	3.0	25	81	7	93	35	14	8	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35265248--35265288	10	4.4	10	79	17	52	17	21	0	60	1.35
35267456--35267665	29	7.2	29	83	2	251	37	14	25	22	1.93
35272376--35272518	75	1.9	75	82	2	180	34	4	18	42	1.71
35272610--35272703	41	2.3	41	81	3	100	29	15	23	30	1.96
35272828--35273043	63	3.2	67	79	9	233	30	10	15	43	1.80
35272894--35272991	32	3.1	32	68	24	89	30	8	19	41	1.80
35275325--35275435	39	2.9	38	82	2	132	35	9	13	42	1.76
35288754--35288787	13	2.8	12	87	12	52	38	17	8	35	1.81
35288904--35289020	39	3.0	39	82	2	128	37	9	11	41	1.73
35292152--35292329	27	6.6	27	83	3	205	26	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187