genome.fa.s15.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  124  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36951111--36951168	23	2.5	23	82	0	71	20	15	13	50	1.78
36952448--36952513	32	2.1	32	97	0	123	27	13	15	43	1.84
36955196--36955224	12	2.3	13	94	5	51	75	0	24	0	0.80
36956509--36956653	42	3.5	42	85	3	202	15	31	24	27	1.96
36958191--36958304	60	1.9	60	96	0	210	41	18	19	21	1.91
36964648--36964695	18	2.7	18	83	6	62	31	6	35	27	1.82
36964628--36964706	39	2.1	36	81	11	88	34	3	35	26	1.75
36965144--36965177	17	2.0	17	94	0	59	20	17	8	52	1.71
36967996--36968060	20	3.2	20	67	16	53	30	15	36	16	1.90
36967995--36968146	40	3.9	40	77	14	138	33	15	30	19	1.93
36973331--36973416	42	2.0	42	100	0	172	34	16	16	32	1.91
36979137--36979284	20	7.4	20	67	13	72	35	16	28	18	1.93
36979127--36979284	40	4.0	40	85	2	221	35	16	29	18	1.93
36981496--36981648	29	5.2	29	78	7	157	24	26	12	36	1.91
36981487--36981632	59	2.5	59	86	3	188	24	25	13	36	1.91
36983060--36983658	40	15.0	40	93	0	903	25	29	20	24	1.99
36984737--36984818	29	2.8	29	94	0	137	24	21	17	36	1.94
36987904--36987938	13	2.7	13	83	16	54	22	14	42	20	1.88
36989255--36989319	26	2.5	26	84	0	85	35	24	16	23	1.95
36991052--36991100	26	1.9	25	83	4	62	28	12	12	46	1.77
36992394--36992432	18	2.1	19	85	4	53	53	23	2	20	1.57
36995335--36995383	18	2.8	17	78	3	53	40	2	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36995319--36995381	19	3.3	19	77	6	56	36	3	1	58	1.23
36995342--36995448	19	5.3	19	71	17	74	36	0	4	57	1.26
36995377--36995446	19	3.6	19	82	5	79	32	1	5	60	1.29
36997539--36997596	23	2.5	23	85	0	80	20	13	13	51	1.75
37014373--37014634	138	1.9	138	90	1	418	40	7	17	34	1.78
37023752--37023780	14	2.1	14	100	0	58	37	13	13	34	1.85
37025957--37026003	19	2.5	19	89	0	67	46	21	2	29	1.63
37027898--37027964	26	2.6	26	85	0	89	25	23	23	26	2.00
37029753--37029808	26	2.2	26	80	6	60	42	23	14	19	1.88
37032031--37032153	49	2.5	49	78	3	124	22	8	34	33	1.86
37032874--37032923	26	1.9	26	100	0	100	30	28	16	26	1.96
37038589--37038734	50	2.9	50	79	0	166	21	30	21	26	1.98
37043161--37043210	25	2.0	25	100	0	100	48	24	0	28	1.52
37043167--37043213	15	3.5	15	67	27	50	48	25	0	25	1.51
37055575--37055696	23	5.3	23	76	0	127	31	23	20	23	1.98
37055575--37055689	46	2.5	46	84	0	140	32	23	20	23	1.98
37063009--37063113	30	3.5	31	84	5	110	28	21	26	22	1.99
37063036--37063121	30	2.9	30	91	0	136	31	19	26	22	1.98
37063198--37063299	52	2.0	52	88	0	150	37	23	19	19	1.94
37063193--37063299	26	4.1	26	80	0	124	37	23	18	20	1.94
37063508--37063663	80	1.9	81	84	3	208	23	16	18	41	1.89
37063494--37063663	27	6.3	27	79	5	184	22	17	18	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37067607--37067640	16	2.2	15	89	5	50	44	0	0	55	0.99
37071372--37071442	27	2.8	25	78	4	79	22	18	16	42	1.89
37072955--37073008	25	2.2	25	82	0	63	18	44	11	25	1.83
37103486--37103545	30	2.0	30	83	6	77	46	13	8	31	1.72
37112921--37112955	6	5.8	6	96	0	61	45	17	0	37	1.48
37114826--37114982	43	3.6	43	80	5	165	29	26	22	22	1.99
37121971--37122018	23	2.1	23	96	0	87	20	31	4	43	1.71
37123122--37123166	20	2.2	20	84	4	54	26	24	6	42	1.79
37126139--37126171	15	2.1	17	88	11	52	66	0	15	18	1.25
37130754--37130786	15	2.1	17	88	11	52	66	0	15	18	1.25
37134071--37134127	19	3.0	18	85	10	69	29	1	1	66	1.12
37134100--37134170	19	3.5	19	78	7	70	30	0	7	61	1.22
37135499--37135535	20	1.9	19	89	10	58	24	32	0	43	1.55
37135659--37135718	17	3.4	17	72	17	59	36	3	1	58	1.25
37140603--37140631	15	1.9	15	100	0	58	55	6	3	34	1.44
37141815--37141895	42	2.0	41	90	2	126	25	24	2	46	1.65
37143474--37143506	4	8.2	4	93	0	57	24	30	0	45	1.53
37152534--37152828	144	2.0	144	90	3	459	38	3	11	46	1.58
37154115--37154359	27	9.1	27	75	7	112	38	23	18	19	1.93
37154160--37154275	54	2.2	53	84	7	146	42	24	18	15	1.88
37154115--37154275	27	6.0	27	76	7	114	41	24	17	16	1.89
37154211--37154610	54	7.5	53	83	3	392	36	20	19	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37154265--37154610	27	12.9	27	83	4	351	35	18	19	26	1.95
37154206--37154598	81	4.9	81	81	4	438	35	20	19	23	1.96
37154791--37154855	27	2.4	27	83	14	82	20	24	23	32	1.98
37161072--37161279	93	2.2	93	97	0	389	34	8	24	32	1.86
37163766--37163835	35	2.0	35	86	8	97	37	22	8	31	1.85
37164097--37164181	41	2.0	42	90	2	136	30	24	17	27	1.97
37171753--37171861	41	2.7	41	88	0	146	29	23	20	26	1.99
37173540--37173564	13	1.9	13	100	0	50	68	24	0	8	1.16
37188040--37188249	40	5.3	39	89	4	242	25	21	27	25	1.99
37187987--37188249	120	2.2	120	82	4	309	25	21	27	25	1.99
37187988--37188284	80	3.7	80	81	6	230	26	21	27	24	1.99
37195990--37196199	40	5.3	39	89	4	242	25	21	27	25	1.99
37195937--37196199	120	2.2	120	82	4	309	25	21	27	25	1.99
37195938--37196234	80	3.7	80	81	6	230	26	21	27	24	1.99
37197802--37197848	21	2.2	21	96	0	85	25	19	48	6	1.72
37214389--37214661	140	2.0	140	81	4	327	32	22	21	23	1.98
37214253--37214678	70	6.1	70	76	4	295	33	21	19	25	1.97
37214731--37214785	20	2.7	20	88	2	83	41	16	1	40	1.59
37219477--37219882	81	5.0	83	78	10	362	42	20	17	19	1.90
37219477--37219879	27	14.9	28	78	7	322	42	20	17	19	1.89
37219922--37219965	23	1.9	23	90	9	72	22	4	22	50	1.67
37219936--37220002	24	2.8	23	77	6	71	17	5	25	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37220082--37220133	27	1.9	27	85	14	72	25	30	15	28	1.96
37220134--37220189	26	2.2	26	83	0	67	17	23	26	32	1.97
37220180--37220448	32	8.4	32	79	7	269	20	19	21	38	1.94
37220180--37220428	130	1.9	130	84	8	337	20	19	22	37	1.94
37220505--37220569	26	2.5	26	87	0	103	24	24	16	33	1.96
37225010--37225422	70	5.9	70	78	7	333	30	20	20	28	1.97
37225161--37225409	35	7.2	34	63	19	104	30	22	19	27	1.98
37225030--37225422	207	1.9	206	84	4	522	30	20	20	28	1.98
37225456--37225498	20	2.2	20	91	0	68	41	18	0	39	1.51
37225456--37225507	20	2.6	20	84	0	59	40	17	1	40	1.60
37228798--37229097	40	7.5	40	71	10	211	37	18	26	18	1.94
37228828--37229097	80	3.4	80	79	3	303	37	18	25	18	1.94
37231182--37231249	29	2.3	29	82	5	84	27	29	13	29	1.94
37231071--37231398	174	1.9	174	96	0	602	31	24	14	30	1.94
37231351--37231429	29	2.7	30	82	13	110	30	30	13	25	1.94
37239074--37239335	39	6.7	40	88	7	337	24	27	22	25	2.00
37248255--37248404	40	3.8	40	81	1	158	39	15	26	19	1.91
37251694--37251740	24	1.9	25	82	4	60	40	2	34	23	1.67
37252372--37252432	27	2.3	27	88	0	86	44	21	18	16	1.87
37252382--37252492	27	4.3	27	76	19	119	40	18	18	22	1.91
37252419--37252461	22	2.0	22	90	4	70	44	2	23	30	1.66
37252393--37252488	49	2.0	48	87	6	140	42	13	19	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37252697--37252780	26	3.2	26	81	1	96	22	22	15	39	1.92
37252708--37252788	26	3.1	26	81	0	99	24	19	16	39	1.91
37252895--37252984	28	3.2	28	84	6	103	20	24	23	32	1.98
37255125--37255293	27	6.3	27	86	4	198	40	19	20	19	1.91
37255125--37255296	53	3.2	53	84	2	227	40	19	20	20	1.92
37255125--37255296	80	2.1	82	83	2	231	40	19	20	20	1.92
37255625--37255718	28	3.4	28	82	7	120	20	23	24	31	1.98
37255681--37255751	33	2.1	34	84	2	90	22	23	25	28	2.00
37255625--37255751	56	2.2	56	83	7	146	21	22	25	30	1.99
37267471--37267559	28	3.1	28	75	9	90	30	19	5	44	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187