genome.fa.s15.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  146  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44047082--44047308	44	5.2	44	71	16	200	25	25	23	25	2.00
44048400--44048443	21	2.1	21	87	4	63	25	36	11	27	1.90
44053882--44053933	4	12.5	4	81	6	59	65	1	7	25	1.30
44055668--44055705	20	1.9	20	100	0	76	10	31	21	36	1.87
44065181--44065269	25	3.5	26	87	6	119	29	24	23	22	1.99
44070925--44070958	3	11.3	3	87	0	50	29	0	0	70	0.87
44070926--44070980	24	2.3	24	84	6	67	25	3	1	69	1.15
44077807--44078073	82	3.3	82	91	1	419	21	22	26	29	1.99
44077807--44078073	123	2.2	123	91	1	428	21	22	26	29	1.99
44077807--44078074	41	6.5	41	90	3	380	21	22	26	29	1.99
44079896--44079941	21	2.2	21	84	7	58	26	47	2	23	1.63
44079897--44079941	22	2.1	21	83	4	54	26	48	2	22	1.62
44081560--44081723	88	1.9	89	81	1	204	31	5	15	47	1.69
44081827--44082077	86	2.9	86	82	4	272	33	9	15	41	1.80
44082089--44082165	40	1.9	40	84	5	102	32	6	11	49	1.65
44084243--44084404	43	3.8	43	83	2	200	24	17	27	30	1.97
44086303--44086339	16	2.3	16	86	13	58	40	0	0	59	0.97
44088380--44088437	30	1.9	30	89	0	89	41	3	24	31	1.71
44088649--44088680	13	2.5	13	94	0	55	31	0	12	56	1.37
44088775--44089221	50	8.8	50	87	3	549	25	21	30	22	1.99
44090149--44090186	19	2.0	19	94	0	67	36	7	18	36	1.80
44102942--44103050	44	2.5	43	77	8	105	27	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44103018--44103234	45	4.9	45	78	14	261	23	26	20	29	1.99
44103018--44103234	89	2.4	89	99	0	425	23	26	20	29	1.99
44103884--44104046	44	3.7	44	84	4	213	28	27	17	25	1.98
44104079--44104310	44	5.3	44	63	12	125	21	24	27	26	1.99
44104046--44104363	88	3.6	88	85	1	422	20	23	27	27	1.99
44104346--44104892	44	12.5	44	76	8	463	29	26	16	27	1.97
44104358--44104892	132	4.1	132	91	2	839	29	26	16	28	1.97
44104358--44104892	265	2.0	260	89	3	831	29	26	16	28	1.97
44109318--44110363	410	2.5	413	92	3	1677	35	21	18	24	1.96
44112842--44112868	13	2.1	13	100	0	54	7	18	22	51	1.70
44112981--44113009	7	4.3	7	95	4	51	62	10	0	27	1.28
44112975--44113009	14	2.5	13	86	13	52	60	8	0	31	1.27
44118730--44118923	50	3.9	50	87	0	262	25	22	29	22	1.99
44120879--44120959	33	2.5	33	84	6	94	22	22	33	22	1.97
44138276--44138331	29	1.9	30	85	7	80	26	3	3	66	1.25
44138276--44138337	28	2.1	30	82	5	74	24	4	4	66	1.31
44139204--44139291	39	2.3	39	93	0	149	28	15	25	30	1.96
44139273--44139306	8	4.2	8	88	0	50	23	11	29	35	1.90
44140177--44140221	22	2.0	22	83	8	56	46	0	4	48	1.22
44143499--44143544	21	2.3	20	78	14	51	45	17	6	30	1.73
44144527--44146143	808	2.0	808	100	0	3234	31	17	17	33	1.93
44153865--44154309	222	2.0	222	100	0	890	33	17	12	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44166997--44167072	32	2.4	32	88	2	109	35	31	6	26	1.82
44167317--44167476	53	3.0	53	87	0	221	26	25	13	35	1.93
44185703--44185925	112	2.0	112	99	0	437	36	20	13	30	1.90
44186201--44186408	103	2.0	103	99	0	407	41	8	18	32	1.80
44187911--44187991	42	2.0	41	85	2	108	27	20	24	27	1.99
44188046--44188358	50	5.9	50	76	15	270	26	20	31	21	1.98
44188005--44188202	100	1.9	100	86	6	279	27	18	30	23	1.97
44188184--44188223	19	2.1	19	100	0	80	25	15	42	17	1.88
44188134--44188273	69	2.0	69	97	0	262	24	18	36	20	1.95
44188203--44188337	49	2.7	49	86	2	171	27	22	31	19	1.98
44193583--44193680	43	2.3	43	92	0	160	20	17	32	29	1.95
44197139--44197208	19	3.5	20	66	19	56	42	4	5	47	1.47
44201426--44201615	94	2.0	94	94	0	335	37	20	10	32	1.86
44203504--44203538	4	9.0	4	87	6	54	25	0	0	74	0.82
44204841--44204886	20	2.2	20	84	3	65	23	26	28	21	1.99
44204918--44204942	12	2.1	12	100	0	50	76	0	24	0	0.80
44206083--44206138	24	2.5	21	73	18	51	41	28	1	28	1.66
44206653--44206851	40	5.0	40	85	1	222	30	16	30	23	1.96
44206750--44206815	20	3.3	20	66	8	62	25	13	36	24	1.92
44207685--44207714	14	2.2	14	94	5	53	43	6	0	50	1.28
44209057--44209098	15	2.6	16	85	14	59	54	0	4	40	1.21
44209057--44209098	16	2.6	15	88	11	57	54	0	4	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44209270--44209327	28	2.0	29	83	9	75	53	6	0	39	1.28
44210508--44210545	17	2.4	16	87	12	60	5	0	13	81	0.85
44210794--44211091	44	6.5	44	71	14	160	26	19	20	33	1.96
44211014--44211109	44	2.2	44	82	0	120	25	21	21	31	1.98
44222563--44222604	15	2.8	15	82	7	50	57	0	7	35	1.26
44222777--44222863	25	3.3	25	63	12	66	51	6	2	39	1.41
44222771--44222866	28	3.5	28	70	5	97	53	7	2	37	1.41
44222756--44222865	54	2.0	54	100	0	220	54	7	3	34	1.46
44229211--44229333	54	2.3	54	79	9	135	19	28	24	27	1.99
44231156--44231317	35	4.6	35	83	5	184	17	9	30	41	1.81
44238630--44238746	35	3.3	35	82	1	144	17	10	29	41	1.83
44240340--44240462	40	3.1	39	82	5	133	27	16	32	23	1.96
44242313--44242363	16	3.2	16	78	15	61	54	0	1	43	1.11
44248540--44248586	21	2.2	21	85	7	60	72	8	4	14	1.24
44248810--44248846	15	2.5	15	91	4	58	32	0	0	67	0.91
44248829--44248866	20	1.9	20	84	10	51	28	2	2	65	1.19
44250284--44250458	87	2.0	87	97	0	332	18	43	4	33	1.70
44251491--44251530	20	2.0	20	95	0	71	45	0	17	37	1.49
44251576--44251734	47	3.4	46	82	2	201	30	12	20	36	1.90
44251944--44252098	77	2.0	77	97	0	292	28	23	19	29	1.98
44252923--44253076	77	2.0	77	98	0	299	31	16	16	35	1.91
44255962--44256046	27	3.1	27	75	1	98	38	15	22	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44255962--44256045	28	3.0	28	77	3	107	39	15	21	23	1.92
44265123--44265177	27	2.0	27	100	0	110	32	14	10	41	1.81
44267698--44267735	16	2.3	17	86	4	51	21	23	2	52	1.59
44267747--44267788	18	2.5	17	84	7	50	9	16	0	73	1.08
44269872--44269930	16	3.5	17	81	6	75	23	10	5	61	1.48
44269871--44269929	17	3.4	18	77	15	70	22	10	5	62	1.46
44269891--44269940	16	3.2	15	80	8	55	22	12	4	62	1.46
44271442--44271485	20	2.2	20	83	0	52	29	13	29	27	1.94
44276426--44276565	73	1.9	73	95	0	253	16	33	14	35	1.89
44285531--44285729	66	3.0	66	84	11	307	40	13	13	33	1.83
44286761--44286882	65	1.9	65	100	0	244	29	13	18	39	1.88
44287490--44287545	12	4.7	12	95	0	103	51	0	7	41	1.29
44295030--44295076	22	2.2	20	85	14	60	53	0	2	44	1.12
44305185--44305244	21	2.9	21	85	2	68	25	25	30	20	1.99
44305262--44305301	21	1.9	21	84	0	53	25	35	20	20	1.96
44305958--44306026	34	2.0	34	97	0	129	36	27	11	24	1.90
44314424--44314461	18	2.2	18	86	9	53	63	2	13	21	1.42
44320776--44320819	21	2.1	21	83	8	54	25	9	2	63	1.35
44321509--44321536	10	2.8	10	100	0	56	39	10	10	39	1.75
44324492--44324655	90	1.8	90	80	7	199	26	18	12	42	1.87
44331809--44331978	27	6.3	27	78	5	173	31	18	22	26	1.97
44331821--44332009	81	2.3	81	84	1	227	33	19	21	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44332106--44332144	16	2.4	16	91	0	60	35	25	10	28	1.89
44340779--44340888	55	2.0	55	100	0	220	23	16	25	34	1.95
44341534--44341753	41	5.4	41	79	0	224	21	29	13	35	1.92
44341534--44341778	41	6.0	41	79	0	220	21	29	14	35	1.93
44341544--44341767	123	1.8	123	82	0	286	20	29	13	35	1.92
44345678--44345818	50	2.8	50	90	0	210	25	21	31	21	1.98
44346084--44346122	20	2.0	20	89	0	60	53	2	23	20	1.57
44351863--44351969	21	5.2	21	68	13	78	18	30	18	31	1.95
44351863--44352095	41	5.7	40	82	6	272	20	28	17	33	1.95
44351863--44352096	123	1.9	123	86	6	332	20	28	17	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187