genome.fa.s15.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  59  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17610351--17610578	41	5.6	41	95	3	390	30	24	19	26	1.98
17620859--17620911	26	2.0	26	88	0	79	45	0	20	33	1.52
17629313--17629449	67	2.0	67	95	0	247	22	10	33	33	1.88
17633366--17633524	51	3.0	50	81	15	205	33	1	3	61	1.23
17633931--17633987	22	2.7	22	92	7	93	38	10	17	33	1.84
17634189--17634233	23	2.0	23	81	0	54	22	0	15	62	1.33
17634693--17634736	23	2.0	22	95	4	79	36	6	2	54	1.40
17638450--17638751	128	2.4	128	86	2	419	29	18	24	27	1.98
17638715--17638855	44	3.2	44	93	0	246	23	17	28	31	1.97
17640786--17640818	14	2.3	15	89	5	50	27	15	33	24	1.95
17642280--17642624	44	7.8	44	92	0	539	24	17	27	30	1.97
17642287--17642676	132	3.0	132	84	4	369	26	17	26	29	1.98
17643399--17643450	19	2.9	17	81	10	59	40	11	15	32	1.83
17643409--17643485	22	3.7	21	91	8	122	40	10	15	33	1.81
17643692--17643772	37	2.2	37	82	10	94	37	8	1	53	1.40
17647634--17648001	43	8.6	41	85	5	294	26	25	19	28	1.99
17647676--17648022	43	8.1	43	86	4	429	25	26	18	29	1.98
17647634--17648001	86	4.3	86	86	3	458	26	25	19	28	1.99
17647634--17648022	129	3.0	128	86	3	482	26	25	19	28	1.98
17647676--17648022	86	4.0	86	87	2	477	25	26	18	29	1.98
17648389--17648554	87	1.9	87	87	0	242	13	28	18	39	1.88
17648464--17648514	21	2.4	21	90	0	75	3	47	15	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17654026--17654231	9	24.2	9	72	17	138	32	0	17	49	1.51
17654030--17654110	16	4.9	17	76	13	71	38	0	18	43	1.50
17654026--17654136	25	4.4	25	91	0	177	36	0	18	45	1.49
17654026--17654136	50	2.2	50	98	0	213	36	0	18	45	1.49
17654050--17654132	16	5.1	16	83	13	107	34	0	18	46	1.49
17654185--17654224	12	3.3	12	85	0	62	32	0	17	50	1.47
17655506--17655596	21	4.1	21	72	16	53	52	3	4	39	1.38
17655537--17655596	23	2.6	22	77	12	68	53	1	1	43	1.20
17657479--17658420	44	21.6	45	68	11	268	27	25	19	27	1.98
17657562--17657688	45	2.8	44	79	8	132	25	29	21	23	1.99
17657089--17658442	218	6.2	218	89	1	1995	27	25	19	28	1.99
17658425--17659425	129	7.7	129	91	1	1547	24	22	19	33	1.97
17660623--17660660	15	2.5	15	87	8	51	15	15	0	68	1.22
17661543--17661577	6	5.8	6	93	0	61	20	0	11	68	1.20
17661543--17661577	18	1.9	18	100	0	70	20	0	11	68	1.20
17661562--17661614	24	2.2	25	77	16	58	3	11	5	79	1.03
17661574--17661613	11	3.5	11	83	10	53	0	15	0	85	0.61
17666800--17666839	3	13.3	3	94	0	71	67	2	0	30	1.04
17668035--17668079	12	3.8	12	84	0	63	31	2	15	51	1.56
17668028--17668086	24	2.5	24	86	5	77	28	1	16	52	1.54
17668212--17668250	19	2.0	20	95	5	62	56	0	0	43	0.99
17668274--17668354	9	9.0	9	70	15	60	38	2	16	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17668278--17668356	16	5.0	16	76	14	83	39	2	15	43	1.60
17671171--17671205	7	5.1	7	86	6	54	42	42	2	11	1.55
17671173--17671197	13	1.9	13	100	0	50	48	44	0	8	1.32
17671963--17672116	73	2.1	74	85	3	204	28	23	22	25	1.99
17671902--17672243	188	1.8	188	82	5	440	27	23	20	27	1.99
17672049--17672357	115	2.7	115	84	1	361	29	23	20	26	1.99
17672254--17672433	73	2.5	73	85	0	252	25	27	21	25	2.00
17672141--17672544	187	2.2	188	88	1	578	26	26	20	26	1.99
17672327--17672848	114	4.6	113	88	3	766	23	26	23	26	2.00
17672349--17672848	227	2.2	225	93	2	842	23	26	23	26	2.00
17675869--17675909	17	2.3	18	83	4	57	70	4	7	17	1.28
17690520--17690686	33	5.1	33	80	5	178	21	46	4	27	1.69
17690520--17690686	66	2.5	65	84	2	201	21	46	4	27	1.69
17690675--17690756	42	2.0	42	87	4	121	37	31	3	26	1.74
17692991--17693024	3	11.3	3	100	0	68	67	0	0	32	0.91
17710066--17710132	30	2.2	30	100	0	134	44	13	19	22	1.85
17713797--17713835	21	1.9	19	85	10	51	61	5	5	28	1.39
17717982--17718023	21	2.0	21	85	0	57	35	0	26	38	1.57
17724091--17724317	114	2.0	114	98	0	436	33	15	23	28	1.95
17724417--17724443	14	1.9	14	100	0	54	40	0	0	59	0.98
17734074--17734112	18	2.0	21	85	14	57	25	12	20	41	1.88
17740809--17740984	43	3.8	43	75	15	163	23	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17746300--17746629	9	37.8	9	64	20	96	30	3	18	47	1.64
17746289--17746367	25	3.2	25	85	0	104	32	2	16	48	1.60
17746304--17746623	16	18.9	16	68	18	113	30	3	18	48	1.63
17746455--17746493	20	2.0	20	100	0	78	25	0	20	53	1.45
17746467--17746515	13	3.5	13	76	17	53	26	0	20	53	1.46
17746467--17746531	28	2.3	29	86	2	87	26	1	20	52	1.55
17746533--17746580	25	1.9	25	86	0	69	33	4	16	45	1.67
17746538--17746603	34	1.9	34	87	0	96	31	3	18	46	1.64
17746625--17746653	12	2.4	12	100	0	58	41	0	10	48	1.37
17746906--17746983	18	4.2	18	80	15	95	43	1	10	44	1.46
17746899--17746976	39	2.0	41	94	5	142	46	0	10	43	1.37
17746903--17746994	39	2.4	38	85	10	118	43	2	10	43	1.51
17746989--17747159	47	3.8	47	77	12	212	44	3	15	36	1.63
17747826--17747893	19	3.8	19	79	18	92	38	22	11	27	1.89
17747846--17747872	14	1.9	14	100	0	54	37	22	11	29	1.89
17747827--17747897	33	2.2	33	94	0	124	38	21	11	29	1.88
17747825--17747903	19	4.7	16	73	22	72	37	21	10	30	1.86
17749771--17749861	21	4.5	21	74	18	86	37	38	3	20	1.70
17750078--17750104	14	1.9	14	100	0	54	44	0	14	40	1.46
17750086--17750169	34	2.5	35	77	15	86	40	2	8	48	1.46
17750087--17750169	33	2.4	34	76	11	80	40	2	8	48	1.47
17751283--17751958	114	6.0	112	79	8	493	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17751450--17751958	228	2.2	224	82	6	600	25	23	23	27	2.00
17751679--17751976	111	2.7	111	93	2	481	21	23	24	30	1.99
17753092--17753186	22	4.3	22	78	9	77	35	14	28	21	1.93
17753092--17753186	44	2.2	44	84	0	118	35	14	28	21	1.93
17759725--17759973	50	4.8	50	85	4	284	20	29	24	26	1.99
17759724--17759973	100	2.4	104	88	6	357	20	29	24	26	1.99
17760068--17760099	13	2.5	13	94	0	55	56	12	0	31	1.37
17760311--17760368	30	1.9	30	89	0	89	31	24	3	41	1.71
17767319--17767567	50	4.8	50	85	4	284	20	29	24	26	1.99
17767318--17767567	100	2.4	104	88	6	357	20	29	24	26	1.99
17767662--17767693	13	2.5	13	94	0	55	56	12	0	31	1.37
17767905--17767962	30	1.9	30	89	0	89	31	24	3	41	1.71
17776785--17776844	26	2.3	26	88	0	93	36	23	23	16	1.94
17781591--17781690	43	2.3	43	82	0	128	42	18	19	21	1.90
17781674--17781795	43	2.8	43	87	4	158	36	21	18	23	1.94
17781636--17781859	86	2.6	84	76	4	205	38	20	16	24	1.93
17784573--17784639	35	1.9	35	84	6	91	40	32	10	16	1.82
17796826--17796895	35	2.0	34	88	2	104	52	4	8	34	1.51
17797383--17797431	25	2.0	25	87	0	71	51	4	2	42	1.32
17797482--17797516	6	5.8	6	100	0	70	48	0	0	51	1.00
17802183--17802266	44	1.9	44	82	4	107	38	20	15	26	1.92
17802208--17802274	22	3.0	22	84	0	80	38	22	14	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17803711--17803774	26	2.6	25	78	9	69	50	0	0	50	1.00
17804372--17804459	30	3.0	30	81	1	115	25	15	21	37	1.93
17809739--17809944	85	2.4	85	93	0	342	24	18	21	34	1.96
17812753--17812814	29	2.1	29	100	0	124	30	0	25	43	1.55
17818719--17818752	15	2.3	15	90	5	52	67	5	0	26	1.13
17818850--17818905	28	2.0	28	86	6	78	58	1	0	39	1.08
17818941--17818989	22	2.2	21	80	16	55	30	0	32	36	1.58
17818944--17819043	52	1.9	52	89	0	155	36	0	31	33	1.58
17818996--17819064	22	3.1	22	91	0	111	40	0	27	31	1.57
17819069--17819103	18	1.9	18	94	0	61	42	2	17	37	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187