genome.fa.s15.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  158  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47646730--47647076	132	2.6	132	86	1	473	38	14	13	33	1.86
47646731--47647083	65	5.4	64	66	14	191	37	15	13	33	1.86
47646964--47647266	95	3.2	95	94	1	500	35	15	15	33	1.89
47647156--47647794	132	4.9	132	83	3	725	37	13	15	33	1.87
47647183--47647794	263	2.3	262	84	1	796	37	13	15	33	1.86
47647211--47647544	65	5.1	65	69	15	218	38	11	14	35	1.82
47647817--47648057	132	1.8	132	83	0	320	40	12	12	34	1.81
47647959--47648156	101	2.0	101	85	2	272	41	13	11	33	1.80
47647582--47648291	233	3.1	233	83	2	862	38	13	14	33	1.86
47648040--47648786	132	5.7	131	81	3	766	39	13	13	33	1.84
47648040--47648780	396	1.9	395	82	2	941	39	13	13	34	1.84
47648558--47649003	224	2.0	224	82	4	540	37	13	14	34	1.85
47648799--47649396	131	4.6	131	91	2	870	36	15	14	33	1.88
47649081--47649281	65	3.1	65	63	17	171	38	13	13	33	1.85
47658571--47658607	6	6.3	6	96	3	67	48	0	0	51	1.00
47660909--47660943	18	1.9	18	88	0	52	42	14	11	31	1.81
47661654--47661757	46	2.3	46	85	5	131	43	13	1	41	1.55
47662533--47662577	22	2.1	21	87	4	63	15	6	8	68	1.36
47664216--47664274	29	2.0	29	96	0	109	38	8	42	10	1.69
47686443--47686634	50	3.7	50	82	4	204	22	27	21	28	1.99
47693945--47694080	50	2.7	50	79	0	146	20	27	25	27	1.99
47696827--47697277	27	16.7	27	80	8	354	42	19	17	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47696829--47697277	81	5.6	79	77	8	390	42	19	17	20	1.90
47697493--47697567	26	2.9	26	82	6	98	18	22	25	33	1.97
47697670--47697791	28	4.1	29	87	10	160	22	23	23	30	1.99
47697670--47697792	56	2.1	59	88	8	180	21	23	23	30	1.99
47697684--47697826	28	4.6	33	85	9	110	23	25	24	25	2.00
47706756--47706807	11	5.0	10	81	11	52	1	11	1	84	0.78
47706756--47706808	17	3.1	16	86	10	70	1	13	1	83	0.82
47710349--47710374	13	2.0	13	100	0	52	15	46	15	23	1.83
47712800--47712836	10	3.8	10	92	3	58	64	2	0	32	1.07
47721323--47721721	50	7.8	50	92	2	573	25	22	30	20	1.98
47728411--47728467	30	1.9	29	82	10	71	43	3	19	33	1.68
47728473--47728521	19	2.6	19	78	15	66	24	4	28	42	1.73
47731696--47731730	3	11.7	3	100	0	70	0	0	31	68	0.90
47740221--47740282	26	2.4	26	86	0	79	40	12	9	37	1.77
47745425--47745449	13	1.9	13	100	0	50	48	0	0	52	1.00
47745927--47745961	16	2.2	16	89	0	52	34	0	5	60	1.21
47753649--47753848	51	3.9	51	73	8	192	30	27	17	25	1.97
47753657--47753841	101	1.8	102	88	3	284	30	25	17	25	1.97
47759918--47759971	5	10.8	5	92	7	92	18	0	0	81	0.69
47762743--47762781	12	3.3	12	83	16	55	5	0	12	82	0.83
47765130--47765166	16	2.2	17	90	4	58	40	2	2	54	1.29
47765299--47765633	167	2.0	168	90	4	534	35	9	7	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47766087--47766134	16	3.0	16	75	0	51	58	0	0	41	0.98
47766178--47766254	40	1.9	40	91	2	127	40	7	7	44	1.62
47766767--47766806	14	2.9	14	82	14	55	0	40	0	60	0.97
47775499--47775744	58	4.2	59	75	17	228	51	4	0	43	1.26
47775491--47775744	120	2.2	115	88	8	370	51	3	1	43	1.27
47778696--47779152	231	2.0	221	91	4	725	33	13	16	36	1.88
47780498--47780564	34	1.9	35	87	3	100	46	13	7	32	1.71
47789686--47789808	27	4.8	26	75	16	112	19	15	21	43	1.87
47792104--47792169	26	2.5	26	80	2	69	28	22	7	40	1.81
47795959--47796000	16	2.5	17	81	14	52	42	2	0	54	1.13
47801895--47802237	27	12.7	27	82	6	390	40	18	15	25	1.89
47802435--47802505	26	2.7	26	84	0	88	15	25	22	36	1.93
47802615--47802699	30	2.8	30	85	0	107	20	28	23	28	1.99
47806404--47806438	16	2.3	15	90	5	52	42	0	0	57	0.99
47810041--47810089	10	4.8	10	85	11	55	32	0	4	63	1.13
47811872--47811928	10	5.6	10	80	12	62	33	1	1	63	1.15
47815841--47815878	19	2.0	19	85	10	51	21	42	0	36	1.53
47821623--47821807	40	4.6	40	84	0	226	22	27	16	33	1.95
47827980--47828143	40	4.1	40	87	3	231	20	27	20	32	1.97
47828016--47828120	20	5.2	20	61	13	54	20	31	20	28	1.97
47828728--47828797	36	1.9	36	82	0	86	27	35	25	11	1.90
47835769--47835798	5	6.0	5	100	0	60	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47839461--47839485	13	1.9	13	100	0	50	44	8	16	32	1.76
47858177--47858212	18	1.9	19	94	5	65	33	0	0	66	0.92
47858786--47858822	10	3.9	9	86	13	56	64	2	0	32	1.07
47869369--47869445	38	2.1	37	83	7	95	71	3	14	10	1.27
47869389--47869436	22	2.1	23	84	3	62	70	4	16	8	1.27
47870321--47870484	44	3.8	42	76	9	145	28	21	20	28	1.98
47870522--47870912	50	7.8	50	70	3	248	27	23	19	29	1.98
47870496--47870907	100	4.1	100	86	1	540	27	22	19	30	1.98
47870496--47870907	200	2.1	200	88	1	612	27	22	19	30	1.98
47871049--47871221	88	2.0	88	89	2	267	26	25	20	27	1.99
47875921--47875958	16	2.2	19	86	13	55	50	0	10	39	1.37
47886930--47886960	16	1.9	16	100	0	62	41	0	32	25	1.56
47886931--47886967	16	2.3	16	90	0	56	40	2	32	24	1.69
47886945--47887041	45	2.2	44	90	5	151	30	4	28	36	1.76
47887150--47887240	21	4.6	20	70	20	66	54	2	1	41	1.19
47887326--47887372	18	2.6	18	90	6	69	57	0	0	42	0.98
47887273--47887423	82	1.8	82	80	10	184	52	3	0	43	1.22
47887344--47887440	29	3.1	29	68	16	86	47	3	1	48	1.24
47888877--47889007	49	2.9	43	78	12	163	48	10	9	30	1.70
47891628--47892191	289	1.9	291	87	4	820	35	20	12	31	1.90
47896618--47896662	21	2.2	21	84	4	56	20	17	28	33	1.95
47917353--47917378	9	2.9	9	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47920891--47920932	19	2.2	19	91	8	68	54	0	16	28	1.42
47922144--47922384	80	3.0	80	95	0	410	35	16	6	41	1.74
47922729--47922848	20	5.9	20	75	1	114	44	20	24	10	1.83
47922720--47922843	60	2.0	61	81	4	144	42	20	25	11	1.85
47928717--47929069	173	2.0	173	93	1	609	37	20	11	30	1.88
47930989--47931060	27	2.7	27	80	0	81	16	6	38	37	1.76
47931024--47931126	27	3.9	27	77	6	102	21	10	35	32	1.88
47936482--47936666	79	2.3	81	84	7	236	24	22	27	25	2.00
47936483--47936666	40	4.6	40	83	9	216	24	22	27	25	2.00
47936483--47936699	79	2.7	79	81	7	201	25	22	27	24	2.00
47945726--47945805	25	3.2	26	82	7	85	32	20	25	22	1.98
47965297--47965321	8	3.1	8	100	0	50	24	12	40	24	1.88
47970824--47970890	33	2.0	33	94	0	116	40	10	7	41	1.67
47971752--47971810	30	1.9	31	86	3	84	28	20	3	47	1.66
47971968--47972016	23	2.1	23	92	0	80	24	8	24	42	1.81
47974215--47974504	40	7.3	40	93	1	422	24	21	27	26	1.99
47974162--47974504	80	4.3	80	88	2	424	25	20	27	26	1.99
47974162--47974506	120	2.9	118	86	3	424	24	20	27	26	1.99
47982242--47982451	40	5.3	39	89	4	242	25	21	27	25	1.99
47982189--47982451	120	2.2	120	82	4	309	25	21	27	25	1.99
47982190--47982486	80	3.7	80	81	6	230	26	21	27	24	1.99
47989788--47989934	73	2.0	74	93	1	251	24	9	21	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48003779--48003803	13	1.9	13	100	0	50	40	12	16	32	1.84
48013707--48013771	13	5.1	13	79	3	78	36	23	6	33	1.80
48013707--48013771	25	2.5	26	80	2	78	36	23	6	33	1.80
48017590--48017624	18	2.0	18	88	5	54	20	37	22	20	1.95
48020298--48020326	10	2.7	11	94	5	51	68	0	10	20	1.18
48023071--48023110	18	2.3	19	87	12	59	60	12	7	20	1.56
48029905--48030017	42	2.7	41	79	5	127	30	17	22	29	1.97
48030790--48031014	69	3.3	69	82	0	288	25	16	16	41	1.88
48036665--48037622	154	6.3	153	88	5	1286	51	7	9	31	1.62
48036665--48037612	302	3.1	302	87	6	1301	51	7	9	31	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187