genome.fa.s15.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  14  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3588265--3588291	2	13.5	2	100	0	54	0	51	0	48	1.00
3591027--3591064	6	6.3	6	96	0	67	50	31	15	2	1.58
3593512--3593654	48	3.0	48	84	4	189	16	37	12	33	1.87
3602836--3602895	23	2.7	23	89	2	95	31	3	38	26	1.73
3603589--3603628	19	2.0	21	85	9	57	22	0	5	72	1.04
3609129--3609195	27	2.5	27	80	9	84	22	31	26	19	1.98
3617225--3617369	53	2.7	53	90	3	229	36	14	22	26	1.93
3617534--3617798	57	4.7	56	79	7	241	33	18	22	26	1.96
3617533--3617798	114	2.3	113	81	7	306	33	18	22	25	1.96
3617553--3617806	29	9.0	28	70	13	173	33	18	22	25	1.96
3621952--3622234	139	2.0	139	97	0	532	29	25	13	31	1.94
3626098--3626132	14	2.5	14	80	0	52	65	0	0	34	0.93
3630602--3630663	4	15.5	4	100	0	124	50	24	0	25	1.50
3641400--3641734	51	6.7	49	78	7	332	23	18	26	30	1.98
3641396--3641734	101	3.4	101	92	0	570	23	18	26	30	1.98
3641400--3641728	50	6.5	51	78	5	346	24	18	26	30	1.98
3641403--3641788	51	7.7	49	76	6	272	24	18	26	30	1.98
3642679--3642777	49	2.0	49	86	0	135	26	14	28	31	1.95
3644169--3644295	63	2.0	63	95	0	227	43	8	20	27	1.81
3644510--3644694	93	2.0	93	98	0	361	41	0	11	45	1.45
3645668--3645698	15	2.1	15	100	0	62	45	6	12	35	1.68
3649359--3649528	86	2.0	85	83	4	218	38	16	8	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3649702--3649788	10	8.8	10	70	9	54	62	1	1	35	1.11
3649693--3649766	29	2.6	29	86	0	112	60	0	2	36	1.11
3649694--3649795	10	10.3	10	70	12	50	62	0	1	34	1.13
3649811--3649837	13	2.1	13	100	0	54	37	25	0	37	1.57
3650077--3650113	19	1.9	19	94	0	65	32	0	0	67	0.91
3654432--3654479	16	3.1	15	79	8	60	31	2	0	66	1.03
3654419--3654480	26	2.2	27	80	16	72	37	1	0	61	1.06
3654711--3654948	84	2.8	84	88	2	345	31	11	11	46	1.75
3672587--3672748	43	3.8	42	77	8	139	32	27	16	24	1.96
3677478--3677502	10	2.5	10	100	0	50	12	20	0	68	1.21
3677785--3677814	3	10.0	3	100	0	60	0	33	0	66	0.92
3692419--3693416	499	2.0	500	98	0	1944	31	23	14	30	1.94
3699690--3700031	27	12.7	27	80	3	332	41	21	17	20	1.91
3699690--3700031	80	4.2	80	82	6	397	41	21	17	20	1.91
3703158--3704166	100	10.1	100	91	0	1491	23	20	22	33	1.97
3706389--3706416	9	3.1	9	100	0	56	0	10	0	89	0.49
3706393--3706428	12	2.8	13	87	8	56	0	16	0	83	0.65
3706433--3706467	15	2.4	15	90	4	54	14	0	5	80	0.89
3712697--3712790	27	3.5	27	83	4	118	47	19	14	18	1.82
3712967--3713021	26	2.1	26	93	0	92	23	21	20	34	1.97
3719135--3719164	6	4.8	6	92	8	51	0	20	0	80	0.72
3720087--3720445	27	13.3	27	86	2	429	43	20	16	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3723867--3723910	22	1.9	23	81	9	54	43	0	9	47	1.35
3728431--3728475	20	2.1	21	88	12	65	37	2	0	60	1.09
3728461--3728489	14	2.1	14	100	0	58	34	0	0	65	0.93
3728466--3728507	22	1.9	22	85	9	59	40	0	0	59	0.97
3728697--3728758	13	4.5	13	77	16	63	40	0	0	59	0.97
3728709--3728772	29	2.2	30	83	13	80	39	1	1	57	1.17
3734741--3734792	20	2.6	19	75	6	50	42	5	0	51	1.25
3734833--3734913	41	2.0	40	85	7	110	62	4	0	32	1.16
3734954--3735027	21	3.4	21	75	10	76	56	4	0	39	1.18
3735022--3735067	12	3.8	12	80	11	58	73	6	0	19	1.04
3751502--3751601	10	9.9	10	74	18	75	58	0	3	39	1.14
3751486--3751618	40	3.3	40	85	7	180	63	0	3	33	1.10
3751504--3751579	9	8.0	9	78	12	73	61	0	1	36	1.04
3756111--3756163	21	2.5	22	84	9	65	56	1	1	39	1.21
3778904--3779026	42	2.9	42	77	9	124	43	17	20	18	1.89
3781123--3781155	16	2.1	15	94	5	57	60	0	0	39	0.97
3781339--3781381	17	2.5	17	84	3	59	30	0	0	69	0.88
3784085--3784157	26	2.8	27	76	14	71	35	20	20	23	1.96
3791864--3791938	26	2.9	26	80	2	89	42	22	14	20	1.88
3804737--3804989	9	29.9	9	70	15	157	32	2	19	44	1.65
3804784--3804879	16	5.9	16	77	9	88	30	2	20	46	1.62
3804742--3804933	25	8.0	25	72	12	136	33	1	18	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3804750--3804879	66	2.0	66	90	0	206	31	1	20	46	1.60
3804784--3804981	41	5.0	41	69	20	64	31	3	19	45	1.65
3804809--3805004	102	1.9	100	90	6	315	33	3	18	45	1.65
3804973--3805015	20	2.2	20	86	0	59	51	0	9	39	1.34
3804987--3805032	20	2.4	19	85	3	56	50	0	2	47	1.13
3805048--3805092	23	2.0	22	86	4	63	46	0	6	46	1.29
3805041--3805101	30	2.0	30	84	6	79	47	0	6	45	1.28
3807155--3807403	105	2.4	102	83	8	295	26	12	13	46	1.79
3807300--3807336	18	2.0	20	89	10	60	27	0	0	72	0.84
3807300--3807336	19	2.0	18	89	5	56	27	0	0	72	0.84
3807829--3807871	22	2.0	22	90	0	68	37	41	2	18	1.63
3807836--3807877	22	1.9	22	90	0	66	33	47	2	16	1.60
3807852--3807880	15	1.9	15	100	0	58	34	51	0	13	1.42
3807833--3807881	22	2.3	21	79	6	62	36	44	2	16	1.59
3807900--3807941	14	2.9	14	86	6	57	33	40	2	23	1.68
3808210--3808236	14	1.9	14	100	0	54	37	37	0	25	1.57
3807713--3808322	310	2.0	302	86	7	854	41	28	2	27	1.70
3808327--3808814	114	4.3	114	78	7	535	28	25	20	25	1.99
3809003--3809058	26	2.1	27	84	15	73	50	0	39	10	1.37
3809235--3809572	113	3.0	114	77	11	341	33	23	15	27	1.95
3809235--3809687	115	4.0	113	78	9	368	33	22	15	27	1.95
3810152--3810407	7	35.9	7	69	14	94	43	33	1	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3810152--3810412	14	17.8	14	69	15	109	43	32	1	21	1.64
3810236--3810395	65	2.5	65	91	3	252	43	31	2	22	1.67
3813496--3813544	20	2.5	19	81	15	55	4	16	2	77	1.01
3816662--3816709	22	2.4	21	83	16	59	41	8	6	43	1.60
3832793--3832859	30	2.2	30	86	0	89	26	19	16	37	1.93
3833711--3833778	30	2.3	30	86	0	91	36	14	23	25	1.93
3838345--3838509	76	2.2	76	91	0	267	26	20	23	29	1.98
3838768--3838809	15	2.6	16	82	17	52	38	4	16	40	1.70
3841041--3841070	9	3.3	9	95	0	51	53	0	16	30	1.44
3846766--3846819	27	2.0	27	92	0	90	48	7	0	44	1.31
3847525--3847590	34	1.9	34	87	6	98	45	15	7	31	1.74
3850391--3850546	43	3.7	43	76	10	149	30	14	27	26	1.95
3855405--3855439	14	2.5	14	100	0	70	22	28	0	48	1.51
3855565--3855600	12	2.9	12	91	4	54	16	27	0	55	1.42
3855565--3855600	18	1.9	19	88	5	56	16	27	0	55	1.42
3867163--3867537	188	2.0	187	90	0	597	33	16	20	30	1.94
3870415--3870461	18	2.6	18	79	0	58	44	4	31	19	1.70
3870912--3870948	17	2.2	17	90	0	56	21	18	5	54	1.64
3874733--3874831	47	2.1	48	86	1	137	19	21	21	38	1.94
3875666--3875839	94	1.9	94	86	2	251	33	20	11	35	1.88
3875750--3876019	130	2.1	129	83	2	344	32	19	12	34	1.90
3876943--3876989	21	2.2	20	79	17	51	23	17	4	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3877967--3878030	20	3.2	20	69	8	58	42	15	17	25	1.88
3897548--3897601	22	2.4	23	84	12	76	25	29	1	42	1.66
3897546--3897601	11	4.9	12	73	18	57	25	30	1	42	1.65
3899981--3900429	21	21.0	21	82	6	467	46	27	1	24	1.60
3899981--3900429	22	21.0	21	78	10	355	46	27	1	24	1.60
3899981--3900429	43	10.5	42	84	4	535	46	27	1	24	1.60
3904734--3905182	21	21.0	21	82	6	467	46	27	1	24	1.60
3904734--3905182	22	21.0	21	78	10	355	46	27	1	24	1.60
3904734--3905182	43	10.5	42	84	4	535	46	27	1	24	1.60
3907145--3907179	18	1.9	18	94	0	61	57	20	0	22	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187