genome.fa.s15.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  60  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17828022--17828108	39	2.3	38	84	5	106	33	14	13	37	1.86
17828117--17828193	32	2.4	32	80	4	93	24	24	6	44	1.77
17854072--17854157	27	3.3	27	79	6	88	40	33	6	18	1.78
17854181--17854242	21	3.0	21	68	17	56	40	4	14	40	1.67
17867459--17867545	25	3.5	25	83	7	106	33	20	21	24	1.97
17867491--17867564	25	3.0	25	86	4	87	36	16	21	25	1.94
17867683--17867742	28	2.2	26	80	13	68	48	16	1	33	1.56
17870638--17870748	27	4.1	27	85	0	132	35	14	25	25	1.94
17871797--17871839	21	2.0	21	90	0	68	41	0	16	41	1.48
17876369--17876526	27	5.9	27	82	0	154	35	16	20	27	1.94
17876361--17876525	54	3.1	54	81	1	179	38	15	20	26	1.92
17880927--17880956	15	2.0	15	93	0	51	63	0	0	36	0.95
17881458--17881534	19	3.8	18	72	24	64	42	5	0	51	1.24
17881456--17881538	9	9.3	9	68	21	50	45	4	0	49	1.23
17881454--17881548	43	2.2	43	98	0	181	45	4	0	50	1.21
17882901--17882980	22	3.6	23	76	10	85	55	0	0	45	0.99
17882914--17882952	12	3.2	12	86	10	53	46	0	0	53	1.00
17885402--17885426	11	2.3	11	100	0	50	56	8	0	36	1.29
17886045--17886221	88	2.0	88	98	0	345	45	14	11	29	1.79
17886226--17886277	25	2.1	25	82	7	61	1	26	3	67	1.18
17886265--17886295	15	2.0	16	93	6	55	6	19	9	64	1.45
17886715--17886749	13	2.6	14	81	9	54	48	17	17	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17887943--17887971	3	9.7	3	100	0	58	34	0	34	31	1.58
17891492--17891551	15	4.0	15	82	0	75	40	26	6	26	1.81
17891527--17891561	15	2.3	15	90	0	52	48	28	8	14	1.73
17891500--17891561	30	2.1	30	84	6	81	45	25	6	22	1.76
17892391--17892480	40	2.2	40	82	7	112	30	30	7	32	1.86
17892639--17892700	21	3.0	21	82	0	79	30	25	16	27	1.96
17896491--17896552	31	2.0	31	83	0	79	30	17	6	45	1.74
17896524--17896634	60	1.9	60	84	3	154	23	18	12	45	1.84
17896783--17896808	4	6.5	4	100	0	52	23	0	0	76	0.78
17898249--17898305	26	2.2	26	81	9	62	54	5	0	40	1.23
17898996--17899061	20	3.3	20	77	8	71	34	1	0	63	1.04
17904335--17904475	49	2.9	49	77	10	112	41	21	17	19	1.91
17904335--17904471	25	5.5	25	69	11	77	40	21	18	19	1.92
17904407--17904488	25	3.4	23	76	15	69	46	24	17	12	1.82
17904407--17904494	24	3.6	26	77	17	75	45	25	18	11	1.82
17916186--17916214	12	2.3	13	94	5	51	17	0	6	75	1.01
17931715--17931883	57	3.0	57	84	0	176	26	24	15	34	1.95
17931799--17931888	29	3.1	29	68	13	78	22	21	15	41	1.90
17932007--17932368	53	6.9	52	83	3	359	28	25	12	33	1.92
17932015--17932373	159	2.3	159	81	1	409	27	26	11	33	1.92
17932799--17932831	16	2.0	17	88	5	50	48	18	6	27	1.71
17936502--17936530	15	1.9	15	100	0	58	55	6	3	34	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17940205--17940329	57	2.2	58	90	7	193	27	19	6	47	1.73
17949100--17949146	15	3.0	15	79	11	58	2	21	0	76	0.89
17956221--17956257	20	1.9	18	89	10	56	54	8	0	37	1.30
17962002--17962092	41	2.2	41	98	0	173	24	12	15	48	1.79
17964578--17964627	24	2.1	24	100	0	100	40	16	8	36	1.77
17965566--17965600	17	2.1	17	94	0	61	45	17	0	37	1.48
17969322--17969353	9	3.7	9	91	8	57	40	0	0	59	0.97
17970475--17970506	5	6.8	5	92	7	50	40	0	0	59	0.97
17971473--17971513	20	2.1	19	86	4	55	2	17	4	75	1.08
17971493--17971536	17	2.5	17	81	3	52	4	18	4	72	1.19
17971493--17971534	18	2.4	18	84	7	52	4	16	4	73	1.17
17977516--17977597	43	1.9	43	94	0	146	36	8	23	31	1.85
17977800--17977856	10	6.0	10	75	17	50	36	0	5	57	1.21
17977801--17977859	9	6.2	9	79	15	57	37	0	5	57	1.21
17977808--17977869	19	3.3	19	77	20	58	38	0	3	58	1.15
17980449--17980478	8	3.8	8	95	0	51	33	26	13	26	1.93
17981149--17981173	5	5.0	5	100	0	50	20	0	0	80	0.72
17983603--17983744	65	2.2	65	87	0	194	28	0	21	48	1.55
17983694--17983790	46	2.1	46	82	0	122	34	2	20	43	1.64
17983834--17983909	29	2.6	29	75	4	82	39	7	19	32	1.81
17985026--17985123	40	2.5	40	77	0	97	44	20	12	22	1.84
17985200--17985389	41	4.6	41	88	1	256	20	22	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17985896--17985933	14	2.6	15	83	4	51	28	0	36	34	1.58
17988206--17988246	15	2.7	15	92	7	66	73	0	0	26	0.84
17988205--17988239	4	8.8	4	87	12	54	74	0	0	25	0.82
17988698--17988746	25	2.0	24	88	7	73	65	4	4	26	1.29
17988752--17988805	28	1.9	27	92	3	81	62	3	1	31	1.23
17992389--17992474	43	2.0	43	86	0	118	33	10	10	45	1.73
17992723--17993028	43	7.2	43	85	0	357	26	18	28	26	1.98
17994073--17994141	29	2.4	28	83	9	86	66	0	1	31	1.00
17997634--17999434	278	6.4	279	84	3	2145	39	12	8	39	1.73
18000323--18000378	28	2.0	28	100	0	112	17	14	21	46	1.84
18000380--18000421	10	4.3	10	81	3	50	9	0	9	80	0.89
18000375--18000421	20	2.2	23	85	11	64	8	2	8	80	0.97
18000389--18000427	20	2.0	20	84	0	51	7	0	15	76	0.99
18002197--18002243	21	2.2	21	92	0	76	38	0	48	12	1.41
18002209--18002237	15	1.9	15	100	0	58	41	0	48	10	1.37
18002239--18002267	15	1.9	15	100	0	58	27	6	41	24	1.80
18014022--18014065	3	14.7	3	100	0	88	0	0	31	68	0.90
18019884--18019917	17	1.9	18	88	5	52	58	20	2	17	1.51
18020136--18020166	12	2.7	11	90	9	53	70	0	0	29	0.87
18022571--18022630	30	2.0	31	83	3	77	41	0	40	18	1.50
18026139--18026180	16	2.7	16	79	17	52	11	7	0	80	0.88
18026168--18026219	24	2.2	24	90	6	81	3	25	1	69	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18029657--18029716	30	2.0	31	83	3	77	41	0	40	18	1.50
18029574--18030030	164	2.8	163	87	5	473	33	0	41	24	1.55
18029652--18030056	164	2.5	164	94	1	686	34	0	40	25	1.56
18030566--18030595	2	15.0	2	100	0	60	50	0	0	50	1.00
18035955--18035994	20	1.9	20	85	10	53	35	2	2	60	1.24
18037356--18037409	22	2.4	23	84	12	76	64	1	31	1	1.14
18039794--18039835	16	2.7	15	85	7	57	57	2	2	38	1.25
18039872--18039953	38	2.2	38	97	0	155	39	2	3	54	1.31
18039987--18040108	60	2.0	60	85	3	165	54	14	0	30	1.47
18040123--18040284	8	19.4	8	63	17	53	51	14	1	32	1.51
18040096--18040344	49	5.1	49	88	3	353	53	14	1	30	1.48
18040149--18040388	27	9.1	27	78	18	240	53	13	0	31	1.46
18040328--18040379	15	3.2	15	80	19	68	57	13	0	28	1.36
18040268--18040477	82	2.6	81	81	8	214	54	14	0	30	1.44
18040343--18040519	21	8.7	21	75	15	151	54	13	1	30	1.46
18040268--18040518	61	4.1	60	74	19	234	54	13	1	30	1.47
18040362--18040548	61	3.1	61	72	12	179	54	13	1	31	1.47
18040323--18040555	121	2.0	121	84	9	300	54	13	1	30	1.48
18040886--18040914	5	5.8	5	100	0	58	20	62	17	0	1.33
18043123--18043342	101	2.2	102	83	4	275	25	15	27	31	1.96
18043210--18043341	51	2.6	51	83	0	165	24	15	27	32	1.96
18043263--18043343	26	3.2	26	62	28	64	22	14	29	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18043345--18043437	45	2.1	45	91	0	150	25	18	23	32	1.97
18044898--18044956	29	2.0	29	96	0	109	16	25	20	37	1.93
18051264--18051339	39	2.0	37	82	10	91	52	3	2	40	1.34
18051285--18051360	37	2.1	37	82	9	93	51	2	1	44	1.23
18053241--18053282	22	1.9	22	90	0	66	28	19	21	30	1.97
18058888--18058934	17	2.9	16	73	17	51	2	36	0	61	1.08
18060079--18060199	47	2.6	47	81	2	136	26	25	13	34	1.93
18060156--18060323	90	1.9	90	81	5	205	27	22	16	34	1.95
18064254--18064300	23	2.0	23	83	0	58	21	6	12	59	1.55
18068733--18068764	13	2.5	13	100	0	64	43	15	6	34	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187