genome.fa.s15.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  180  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55065670--55065747	37	2.0	39	87	7	115	64	0	1	34	1.02
55084579--55084643	29	2.2	30	94	2	114	30	7	30	30	1.85
55086005--55086336	166	2.0	166	100	0	664	24	24	22	28	1.99
55089221--55089259	18	2.2	18	90	9	62	5	20	2	71	1.17
55091199--55091245	25	1.9	24	82	4	58	53	10	17	19	1.72
55092008--55092049	20	2.1	20	100	0	84	33	9	14	42	1.78
55096907--55097030	41	3.0	40	84	6	142	20	18	18	42	1.89
55102164--55102229	25	2.6	25	82	0	78	33	18	21	27	1.96
55102315--55102444	13	9.8	13	66	9	57	38	3	19	38	1.70
55108465--55108638	85	2.0	85	97	0	330	29	9	20	40	1.84
55109569--55109625	27	2.1	27	90	3	89	38	5	5	50	1.47
55115069--55115118	24	2.2	24	82	13	61	30	32	4	34	1.76
55116441--55116515	27	2.6	29	82	16	77	36	20	1	42	1.60
55116685--55116770	24	3.5	24	76	7	84	30	23	22	24	1.99
55122588--55122675	45	2.0	45	93	0	149	34	21	18	26	1.96
55122686--55122872	51	3.7	50	80	4	232	30	27	17	24	1.97
55122684--55122868	101	1.8	101	89	3	291	30	27	17	23	1.97
55125233--55125278	23	2.0	23	95	0	83	26	45	0	28	1.54
55125493--55125530	19	2.0	20	84	5	51	31	7	2	57	1.41
55125968--55126025	13	4.5	13	77	0	62	50	1	15	32	1.55
55125968--55126039	26	2.7	26	91	4	117	51	2	15	30	1.57
55126016--55126093	40	1.9	41	82	7	97	42	2	15	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55126126--55126161	13	2.8	13	91	0	54	44	0	22	33	1.53
55144784--55144857	19	3.8	19	91	7	112	37	17	10	33	1.85
55144764--55144856	40	2.3	42	88	7	138	40	17	9	32	1.82
55148281--55148340	30	2.0	31	83	9	79	20	38	0	41	1.52
55150993--55151035	21	2.0	21	100	0	86	18	9	4	67	1.36
55152382--55152451	21	3.4	21	65	23	58	34	4	10	51	1.55
55152382--55152458	40	1.9	40	100	0	154	33	5	10	50	1.59
55152697--55152732	18	2.0	18	100	0	72	33	11	22	33	1.89
55157747--55157924	27	6.6	27	83	3	205	26	15	28	29	1.96
55157748--55157903	82	1.9	81	88	3	233	26	15	28	29	1.96
55157744--55157924	82	2.2	81	83	2	229	27	15	27	29	1.96
55161308--55161375	30	2.3	31	87	5	95	39	11	26	22	1.88
55161363--55161525	29	5.5	29	71	11	125	42	13	23	19	1.87
55161364--55161567	30	6.9	30	71	8	148	40	14	24	20	1.90
55161327--55161566	89	2.7	89	84	2	320	40	15	23	20	1.90
55166989--55167197	40	5.2	40	94	0	364	28	18	27	25	1.98
55169317--55169514	30	6.6	30	76	10	140	39	13	23	23	1.90
55169313--55169425	60	1.9	60	87	3	165	37	13	23	26	1.91
55169406--55169538	30	4.5	30	76	6	137	41	14	24	19	1.89
55173670--55173809	50	2.8	52	83	5	196	32	29	15	23	1.95
55173665--55173800	51	2.7	50	86	3	184	31	28	15	24	1.95
55173917--55173946	15	1.9	16	93	6	53	20	13	0	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55179327--55179408	42	2.0	42	95	0	146	21	20	39	18	1.93
55185049--55185553	44	11.7	44	69	15	167	24	21	20	33	1.97
55185172--55185549	87	4.3	87	99	0	747	25	19	19	34	1.96
55185603--55186213	87	7.0	87	96	0	1078	24	23	22	29	1.99
55187425--55187462	7	5.6	7	84	6	51	13	15	0	71	1.16
55187415--55187457	13	3.2	13	83	9	50	16	13	0	69	1.19
55187425--55187462	20	1.9	20	88	0	58	13	15	0	71	1.16
55187887--55187969	42	2.0	42	83	11	107	7	10	8	73	1.25
55195448--55195646	54	3.7	54	86	1	292	36	13	23	26	1.92
55195773--55195868	29	3.2	29	73	5	86	17	12	27	42	1.85
55195776--55195888	58	1.9	58	84	12	149	18	13	27	40	1.88
55199519--55199560	15	2.7	16	82	14	52	52	2	0	45	1.13
55199528--55199569	15	2.9	15	82	10	52	52	0	0	47	1.00
55199554--55199741	61	3.1	61	69	17	201	48	6	1	43	1.38
55199517--55199814	120	2.5	121	94	3	521	49	4	2	43	1.36
55199634--55199689	15	3.8	15	79	13	55	51	1	0	46	1.11
55199755--55200037	91	3.0	93	84	7	317	48	3	3	44	1.35
55199855--55199915	28	2.2	28	85	5	81	50	3	0	45	1.17
55199862--55200005	47	3.1	46	65	23	113	49	4	2	44	1.33
55199830--55200037	91	2.3	90	90	4	326	46	4	3	45	1.39
55199855--55199997	44	3.2	43	68	16	119	48	3	2	46	1.31
55199880--55200018	47	3.0	47	68	17	137	49	4	2	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55202009--55202044	15	2.4	15	100	0	72	44	11	8	36	1.70
55202573--55202636	21	3.1	21	66	20	62	45	3	10	40	1.55
55208963--55209008	18	2.6	18	86	3	58	23	0	2	73	0.94
55215576--55215627	18	2.9	17	78	13	59	75	1	3	19	1.06
55215905--55215991	20	4.3	21	76	11	83	35	4	0	59	1.18
55220097--55221145	522	2.0	522	97	0	1965	30	13	22	32	1.93
55222870--55223088	39	5.6	39	88	2	296	31	2	18	47	1.61
55230474--55230545	36	2.0	36	88	0	108	27	15	20	36	1.93
55235238--55235305	30	2.3	29	92	2	109	57	17	2	22	1.53
55240677--55240955	50	5.5	49	80	5	193	22	28	21	27	1.99
55240713--55240955	50	4.7	50	83	3	279	22	29	21	26	1.99
55242634--55242697	33	1.9	33	100	0	128	42	4	21	31	1.74
55242678--55242708	12	2.6	12	100	0	62	41	0	25	32	1.56
55243745--55243787	17	2.5	17	96	0	77	20	32	25	20	1.97
55245199--55245338	25	5.6	25	83	4	131	32	21	22	23	1.98
55246568--55246756	59	3.2	57	71	16	152	40	11	25	22	1.88
55246654--55246727	29	2.5	29	93	2	121	40	9	25	24	1.85
55246715--55246821	30	3.6	30	82	6	137	38	11	29	20	1.87
55246626--55246830	59	3.5	60	77	8	186	39	12	27	20	1.89
55246559--55246816	118	2.2	118	85	2	347	39	12	25	22	1.88
55246627--55246829	89	2.3	89	84	5	259	38	12	27	21	1.89
55249251--55249278	8	3.5	8	100	0	56	10	0	0	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55249272--55249301	11	2.6	11	94	5	51	36	3	0	60	1.14
55249251--55249317	8	7.3	9	80	11	50	25	1	0	73	0.92
55249284--55249355	28	2.4	32	86	11	107	31	2	1	63	1.17
55251126--55251175	25	2.0	25	92	0	82	44	8	18	30	1.78
55260091--55260150	9	6.4	9	79	11	59	41	0	3	55	1.16
55260091--55260150	19	3.2	19	78	2	68	41	0	3	55	1.16
55260103--55260146	10	4.7	9	88	8	61	50	0	2	47	1.13
55267579--55267682	41	2.6	40	84	4	129	48	5	24	22	1.72
55267647--55267700	24	2.2	24	83	0	72	59	7	18	14	1.58
55267754--55267820	21	3.4	21	68	16	70	46	13	4	35	1.63
55267747--55267824	38	2.1	38	97	0	147	44	14	3	37	1.63
55267765--55267828	21	3.2	21	63	24	57	45	15	3	35	1.62
55277593--55277668	38	2.0	38	97	0	143	10	14	28	46	1.78
55282836--55282867	2	16.5	2	93	6	57	50	0	0	50	1.00
55283210--55283254	17	2.6	17	85	3	54	68	2	0	28	1.01
55283656--55283728	19	3.8	19	92	0	128	38	16	8	36	1.79
55283633--55283728	38	2.4	39	87	6	131	39	16	7	36	1.77
55286386--55287284	450	2.0	449	85	2	1196	34	19	13	32	1.90
55293261--55293439	42	4.3	41	80	10	166	43	18	20	17	1.88
55293277--55293439	84	1.9	84	85	2	220	42	19	20	17	1.89
55293270--55293472	21	9.7	21	66	5	97	42	18	20	19	1.90
55300058--55300102	22	2.0	22	95	0	81	35	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55300161--55300227	27	2.5	27	95	0	116	28	29	26	14	1.96
55300270--55300399	4	31.8	4	69	18	81	66	0	33	0	0.98
55300259--55300326	18	4.1	18	73	21	67	61	0	38	0	0.96
55300272--55300440	40	4.3	41	75	18	128	66	0	33	0	0.97
55300302--55300439	40	3.3	42	77	17	146	68	0	31	0	0.95
55300302--55300436	44	3.0	45	80	10	129	68	0	31	0	0.95
55300272--55300435	26	6.3	26	70	17	85	66	0	32	0	0.96
55300272--55300409	40	3.5	40	78	15	135	65	0	33	0	0.98
55301234--55301680	159	2.8	156	74	15	396	50	8	12	28	1.68
55307469--55307499	12	2.6	12	94	0	53	61	19	0	19	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187