genome.fa.s15.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  130  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38551837--38552402	43	13.0	44	93	0	903	21	20	25	32	1.98
38553958--38554010	28	2.0	27	85	14	74	41	16	0	41	1.49
38554248--38554328	41	1.9	43	87	5	121	33	22	6	38	1.79
38571890--38571936	9	5.2	9	100	0	94	57	10	0	31	1.33
38571890--38571944	27	2.0	27	92	0	92	58	12	0	29	1.35
38573878--38573915	20	1.9	20	88	0	58	60	0	2	36	1.11
38575752--38575886	67	2.0	68	97	1	254	32	35	9	22	1.86
38576353--38576380	14	2.0	14	100	0	56	7	14	28	50	1.69
38577214--38577341	65	1.9	67	92	6	217	43	4	3	47	1.42
38577595--38577655	20	3.3	20	69	21	60	8	29	0	62	1.24
38578803--38578834	15	2.1	15	100	0	64	37	12	6	43	1.68
38584502--38584627	63	2.0	63	95	0	225	22	24	23	30	1.99
38585411--38585450	16	2.5	16	95	0	71	27	27	7	37	1.84
38586682--38586732	23	2.2	23	82	0	57	39	11	17	31	1.86
38586691--38586817	46	2.7	46	77	13	118	36	9	18	36	1.83
38586741--38586820	23	3.5	22	73	17	74	35	7	16	41	1.76
38586790--38586850	32	1.9	32	83	6	79	27	11	18	42	1.84
38586822--38586938	47	2.5	47	79	4	121	41	13	14	29	1.84
38586977--38587517	54	10.1	54	82	1	476	37	12	23	26	1.91
38589480--38589511	15	2.1	15	94	0	55	37	25	6	31	1.81
38589893--38590054	46	3.6	46	93	2	258	27	23	16	33	1.95
38593669--38593710	21	1.9	23	85	9	61	21	23	4	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38596004--38596488	41	11.9	41	81	3	458	20	20	29	29	1.97
38596004--38596485	204	2.4	205	80	6	489	20	20	29	29	1.97
38601920--38602076	43	3.7	43	84	1	190	28	17	26	28	1.97
38608745--38608864	60	2.0	61	91	1	197	32	15	11	40	1.83
38608842--38608893	25	2.1	25	92	0	86	30	11	23	34	1.90
38610664--38610710	22	2.2	22	84	3	60	63	6	14	14	1.49
38615270--38615417	40	3.7	40	94	0	251	20	26	20	32	1.97
38618800--38618899	31	3.2	30	74	8	92	14	10	8	68	1.40
38618850--38618891	11	3.8	11	80	0	57	19	16	7	57	1.62
38618818--38618899	22	3.8	22	71	16	64	14	12	8	64	1.49
38619003--38619033	11	2.9	11	95	4	55	25	0	6	67	1.14
38638409--38638475	32	2.2	32	79	10	79	20	7	26	44	1.78
38648293--38648584	145	2.0	145	98	0	566	21	26	13	38	1.90
38655114--38655183	28	2.5	28	86	6	99	25	8	30	35	1.86
38662015--38662068	20	2.7	21	74	8	58	33	9	18	38	1.83
38671656--38671704	20	2.5	20	86	6	64	10	36	18	34	1.85
38671770--38671825	20	2.7	21	81	10	62	67	0	32	0	0.91
38672088--38672128	21	2.0	21	100	0	82	41	9	4	43	1.59
38672556--38672598	19	2.3	19	100	0	86	27	18	0	53	1.45
38674598--38674661	32	2.0	32	96	0	119	20	15	17	46	1.83
38678902--38678930	15	1.9	15	100	0	58	20	13	24	41	1.89
38682503--38682559	27	2.1	27	100	0	114	45	10	8	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38706213--38706243	14	2.1	15	94	5	55	22	12	3	61	1.46
38709633--38709740	53	2.0	52	84	7	137	25	13	12	49	1.77
38711804--38711867	32	2.0	32	96	0	119	25	10	21	42	1.85
38712562--38712607	21	2.1	21	84	8	56	45	6	0	47	1.28
38715348--38715386	18	2.2	17	86	13	53	33	0	20	46	1.51
38715612--38715709	23	4.3	23	90	2	162	20	21	26	31	1.98
38715614--38715702	45	2.0	45	95	0	160	19	22	26	31	1.97
38728497--38728547	25	2.0	25	100	0	102	49	11	11	27	1.74
38734319--38734372	17	2.9	19	76	20	69	46	18	11	24	1.81
38734302--38734372	36	2.0	36	94	0	124	46	16	11	25	1.80
38734301--38734365	17	3.7	17	76	15	69	46	16	10	26	1.80
38746524--38746594	35	2.0	35	97	0	133	45	19	21	14	1.85
38760818--38760842	13	1.9	13	100	0	50	60	0	0	40	0.97
38764654--38764779	37	3.4	37	85	2	164	23	12	25	38	1.90
38769782--38769819	17	2.2	18	86	9	53	65	7	7	18	1.43
38779252--38779595	171	2.0	171	97	0	643	35	18	15	31	1.92
38782280--38782333	24	2.2	24	83	6	65	59	11	9	20	1.59
38785935--38786009	26	2.9	26	91	0	114	18	25	21	34	1.96
38794600--38794706	26	4.1	26	79	0	124	21	21	21	35	1.96
38804589--38805043	47	9.6	47	93	1	730	33	8	28	29	1.86
38828831--38828883	15	3.5	16	76	16	51	16	43	0	39	1.49
38837979--38838101	51	2.4	51	82	2	140	23	17	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38837931--38838118	102	1.9	101	84	3	252	24	17	28	29	1.97
38838336--38838367	16	2.0	16	100	0	64	62	0	12	25	1.30
38838728--38838752	11	2.3	11	100	0	50	36	0	44	20	1.52
38839903--38840022	59	2.0	60	95	1	215	36	2	12	48	1.55
38840211--38840255	22	2.0	23	83	12	58	57	0	4	37	1.19
38842941--38844697	125	14.1	125	94	0	2904	35	19	18	26	1.95
38843316--38843365	25	2.0	25	84	0	64	36	20	18	26	1.95
38844566--38844615	25	2.0	25	84	0	64	36	20	18	26	1.95
38846301--38846343	3	14.3	3	95	0	77	30	0	2	67	1.03
38846977--38847482	110	4.6	110	95	1	858	31	16	18	33	1.94
38846977--38847482	219	2.3	218	93	2	863	31	16	18	33	1.94
38848452--38848509	23	2.5	23	78	15	57	56	1	1	39	1.19
38849800--38849897	32	3.2	32	68	13	82	35	14	4	45	1.64
38849784--38849923	63	2.3	59	81	10	165	35	17	6	41	1.75
38850124--38850260	70	1.9	70	94	2	238	70	7	8	13	1.34
38850494--38850523	15	1.9	16	93	6	53	40	0	3	56	1.16
38851233--38851370	27	5.1	27	74	6	109	42	7	23	26	1.82
38853893--38853985	49	1.9	48	88	2	141	38	17	15	29	1.90
38857046--38857751	353	2.0	353	99	0	1385	27	21	19	31	1.97
38857741--38857812	36	2.0	36	100	0	144	66	5	11	16	1.40
38859034--38859124	45	2.0	44	82	2	110	27	28	4	39	1.76
38859174--38859226	24	2.1	26	86	10	74	41	0	5	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38861427--38861472	20	2.2	21	85	11	60	41	23	10	23	1.86
38861503--38861648	27	5.4	27	90	3	224	33	15	18	32	1.92
38868691--38868754	34	1.9	32	90	6	101	21	23	23	31	1.99
38869035--38869100	27	2.4	27	89	0	105	36	12	18	33	1.88
38896976--38897040	32	2.0	32	96	0	121	20	24	32	23	1.98
38897665--38897707	15	2.7	17	79	17	56	11	2	4	81	0.93
38898956--38898986	14	2.2	14	100	0	62	29	12	29	29	1.94
38904330--38904749	43	9.8	43	89	5	586	29	33	18	19	1.95
38907610--38907748	16	9.0	16	69	15	71	29	2	20	47	1.64
38907598--38907689	25	3.7	25	80	2	87	32	2	18	46	1.61
38907606--38907969	9	43.3	9	66	21	141	31	2	20	45	1.64
38907610--38907774	41	4.0	41	80	3	163	29	3	20	47	1.64
38907678--38907733	25	2.2	25	90	0	85	30	3	21	44	1.69
38907686--38907776	25	3.7	25	73	15	75	27	3	20	48	1.65
38907852--38907934	16	4.9	16	76	13	76	36	0	22	40	1.55
38908058--38908182	37	3.5	36	75	17	127	41	3	9	45	1.53
38908109--38908315	94	2.2	94	83	5	258	41	5	7	45	1.56
38908237--38908404	20	8.6	20	71	13	127	41	5	5	47	1.51
38908203--38908393	57	3.3	57	88	1	265	41	5	6	46	1.53
38910238--38910286	18	2.7	18	77	22	50	57	4	8	30	1.47
38913797--38913974	28	6.4	28	88	2	225	25	14	28	32	1.94
38915951--38916368	228	1.8	228	80	5	504	26	20	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38918451--38918549	38	2.7	38	84	12	118	59	4	7	29	1.42
38921307--38921336	15	2.0	15	93	0	51	43	20	6	30	1.77
38934598--38934673	29	2.6	29	82	4	89	48	14	11	25	1.77
38937602--38937634	14	2.3	15	90	10	52	48	3	0	48	1.17
38944715--38944758	22	2.0	22	100	0	88	13	31	18	36	1.90
38944720--38944767	22	2.2	22	88	0	69	16	39	14	29	1.88
38945901--38946067	26	6.3	26	81	2	172	29	27	12	30	1.93
38945901--38946067	52	3.2	52	84	1	199	29	27	12	30	1.93
38950405--38950459	21	2.6	21	83	8	67	25	32	20	21	1.97
38953493--38953626	57	2.4	57	83	3	155	29	23	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187