genome.fa.s15.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  115  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33885118--33885462	186	1.9	185	88	3	523	28	8	20	42	1.82
33885506--33885639	31	4.4	30	74	10	78	32	6	17	43	1.75
33885534--33885702	31	5.5	31	78	6	173	33	5	14	46	1.68
33885451--33885701	92	2.7	92	92	3	409	33	6	14	45	1.72
33886935--33886986	18	2.9	18	72	16	54	59	5	9	25	1.51
33886932--33886988	30	1.9	30	85	7	80	57	7	10	24	1.56
33887207--33887256	23	2.1	23	81	3	55	80	2	6	12	0.98
33887575--33887633	30	1.9	31	86	10	86	67	6	8	16	1.38
33888856--33889482	44	13.8	44	69	13	279	29	21	17	31	1.97
33888994--33889073	41	2.0	41	82	9	101	32	20	17	30	1.95
33897490--33897534	19	2.4	19	85	7	56	40	8	24	26	1.84
33901158--33901212	15	3.5	15	73	22	58	58	7	10	23	1.57
33907815--33907884	7	10.0	7	85	14	92	70	0	15	14	1.18
33907815--33907884	13	5.0	14	85	15	92	70	0	15	14	1.18
33907815--33907884	21	3.3	20	90	7	104	70	0	15	14	1.18
33909201--33909356	44	3.5	44	78	4	136	28	17	24	29	1.98
33909403--33909867	50	9.3	50	75	3	416	32	23	20	23	1.97
33909376--33909961	100	5.9	100	88	0	823	32	23	20	23	1.98
33909403--33909961	50	11.2	50	73	3	390	32	23	20	23	1.97
33914586--33914610	9	2.8	9	100	0	50	8	20	36	36	1.82
33920612--33920648	17	2.1	18	90	5	58	24	0	43	32	1.55
33920744--33920804	7	8.6	7	72	16	54	59	0	1	39	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33922364--33922449	31	2.8	31	78	3	95	36	13	15	34	1.87
33922586--33922651	29	2.2	30	86	2	89	42	12	10	34	1.77
33923886--33923917	13	2.5	13	94	0	55	34	18	18	28	1.95
33932318--33932355	20	1.9	20	88	0	58	39	7	7	44	1.63
33934858--33934954	48	2.0	48	100	0	194	30	14	18	36	1.91
33940039--33940258	25	8.8	25	71	13	134	38	20	24	17	1.93
33940069--33940250	50	3.6	50	84	5	210	37	19	25	17	1.94
33942808--33942860	21	2.5	21	75	6	54	33	18	16	30	1.94
33943396--33943456	15	4.1	14	76	17	52	77	4	4	13	1.10
33945366--33945457	46	2.0	46	95	0	166	26	7	22	43	1.80
33945804--33945859	25	2.2	25	96	0	103	50	5	12	32	1.63
33946094--33946227	41	3.3	41	87	2	171	24	17	26	31	1.97
33960977--33961163	86	2.2	87	84	3	236	31	9	20	39	1.84
33961201--33961265	31	2.1	30	86	8	87	36	3	4	55	1.36
33961768--33961797	15	1.9	16	93	6	53	46	6	6	40	1.56
33975670--33975890	44	5.1	44	63	14	116	30	23	23	22	1.99
33975645--33976150	87	5.8	87	89	3	759	30	23	23	23	1.99
33986770--33986821	23	2.3	23	93	0	86	38	0	11	50	1.39
33990995--33991055	18	3.4	18	69	0	59	11	39	1	47	1.50
33994118--33994161	18	2.5	17	82	7	52	38	0	0	61	0.96
33999332--33999364	14	2.4	14	100	0	66	30	9	15	45	1.77
34000463--34000510	15	3.2	15	84	0	69	47	0	52	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34000464--34000514	6	8.5	6	91	0	66	49	0	50	0	1.00
34000467--34000514	21	2.3	21	85	0	69	50	0	50	0	1.00
34000700--34000824	63	2.0	63	96	1	234	22	20	12	44	1.85
34003265--34003303	20	2.0	20	85	10	53	23	5	10	61	1.48
34008559--34008659	35	2.9	35	89	0	148	15	15	28	39	1.89
34009203--34009261	30	2.0	30	89	0	91	42	5	18	33	1.72
34011581--34011641	25	2.4	25	91	0	95	29	21	21	27	1.98
34018983--34019160	27	6.6	27	84	3	205	29	28	15	26	1.96
34019004--34019159	82	1.9	81	88	3	233	29	28	15	26	1.96
34023239--34023273	16	2.2	16	94	0	61	40	11	5	42	1.65
34033567--34033948	191	2.0	191	97	0	728	25	28	19	26	1.98
34035962--34036016	6	9.2	6	100	0	110	83	0	0	16	0.64
34041652--34041780	61	2.2	59	81	9	138	44	3	3	48	1.36
34041721--34041790	32	2.2	34	78	17	78	44	4	7	44	1.51
34043807--34043862	28	2.0	28	100	0	112	25	10	14	50	1.75
34044610--34044646	15	2.5	15	91	4	58	43	10	2	43	1.53
34044610--34044646	7	5.1	7	90	6	56	43	10	2	43	1.53
34047802--34048150	47	7.4	47	97	1	635	29	30	8	31	1.86
34064668--34065403	195	3.8	194	92	0	1193	29	24	18	28	1.98
34064668--34065392	97	7.5	97	90	0	1108	29	24	18	28	1.98
34064668--34065403	292	2.5	292	89	0	1125	29	24	18	28	1.98
34065693--34065746	24	2.2	24	96	0	99	29	20	12	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34070828--34070853	9	2.9	9	100	0	52	88	0	0	11	0.52
34075503--34075590	46	1.9	46	86	4	124	30	20	20	28	1.98
34075564--34075834	51	5.5	51	82	6	301	28	25	17	29	1.98
34075606--34075846	97	2.5	97	90	0	374	28	25	18	28	1.98
34075500--34075834	51	7.0	46	80	7	276	28	23	18	28	1.98
34076129--34076186	24	2.4	24	97	0	107	29	24	12	34	1.91
34085845--34087784	966	2.0	969	96	1	3595	22	26	13	37	1.91
34090735--34090836	3	34.0	3	81	0	123	61	2	4	30	1.31
34091761--34091802	14	3.0	14	85	0	57	78	0	2	19	0.86
34099946--34100124	85	2.1	85	100	0	358	26	26	8	39	1.84
34118898--34118951	25	2.1	25	86	10	74	33	3	1	61	1.25
34119829--34119894	24	2.8	25	86	4	75	50	13	28	7	1.69
34126031--34126059	12	2.3	13	94	5	51	65	6	6	20	1.40
34132775--34132804	15	1.9	16	93	6	53	13	10	3	73	1.21
34135843--34135930	36	2.4	36	80	10	108	62	0	2	35	1.08
34135867--34135921	29	1.9	28	85	10	76	67	0	0	32	0.91
34135858--34135925	26	2.6	25	77	13	75	67	0	0	32	0.91
34135857--34135951	45	2.1	45	82	9	113	64	1	1	33	1.08
34136326--34136364	14	2.5	16	88	12	55	61	0	2	35	1.10
34136327--34136372	17	2.8	17	78	15	60	56	0	2	41	1.11
34137595--34137623	14	2.0	15	93	6	51	34	6	13	44	1.71
34143516--34143555	18	2.3	18	86	4	55	45	2	35	17	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34143516--34143560	18	2.5	17	85	7	54	46	2	31	20	1.62
34148161--34148203	15	2.8	15	78	3	50	25	18	2	53	1.56
34149106--34149138	12	2.8	12	95	0	57	18	6	0	75	1.00
34161073--34161108	19	1.9	19	94	5	65	66	0	27	5	1.13
34161101--34161131	10	3.0	10	90	9	53	77	0	3	19	0.90
34161594--34161618	13	1.9	13	100	0	50	76	0	0	24	0.80
34174053--34174102	25	2.0	25	88	0	73	20	22	24	34	1.97
34184259--34184303	18	2.6	19	80	16	53	68	8	0	22	1.16
34186358--34186427	27	2.6	27	95	2	113	31	28	12	27	1.93
34186358--34186455	28	3.5	28	90	2	135	31	28	13	26	1.94
34191710--34191793	42	2.0	42	86	2	116	45	2	27	25	1.66
34199148--34199373	40	5.7	40	90	2	321	25	27	22	24	1.99
34214130--34214181	24	2.2	24	89	0	77	36	3	9	50	1.54
34215961--34215988	11	2.5	11	100	0	56	14	7	0	78	0.95
34236578--34236930	49	7.3	49	97	0	619	30	28	8	33	1.87
34239843--34240028	95	2.0	95	100	0	372	38	16	19	25	1.92
34239933--34244814	807	6.1	807	97	0	8903	31	15	16	36	1.90
34244924--34244962	21	1.9	21	94	5	71	48	0	5	46	1.24
34245012--34245085	27	2.7	27	97	0	139	17	22	37	21	1.94
34245146--34245201	22	2.5	22	94	0	94	66	3	30	0	1.09
34246314--34246356	22	2.0	22	90	0	68	25	11	39	23	1.88
34248378--34248402	6	4.2	6	100	0	50	0	32	36	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34250027--34250068	16	2.7	15	85	7	57	57	2	2	38	1.25
34250180--34250253	38	1.9	38	97	0	139	39	2	4	54	1.34
34250470--34250527	22	2.9	19	76	14	62	51	12	1	34	1.49
34250452--34250674	27	9.0	27	76	18	225	54	12	0	32	1.44
34250401--34250674	49	5.6	48	84	8	342	54	13	0	31	1.45
34250454--34250670	98	2.2	98	94	0	389	54	12	0	31	1.44
34250476--34250711	49	5.2	44	73	17	153	55	13	0	30	1.44
34250666--34250808	63	2.2	64	95	2	261	55	13	0	30	1.39
34250785--34250871	20	4.2	21	82	11	99	57	11	0	31	1.34
34261668--34261711	7	6.3	7	81	0	52	20	50	0	29	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187