genome.fa.s15.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  135  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40386044--40386095	17	2.7	19	74	17	54	25	13	21	40	1.89
40386641--40386683	21	2.1	20	86	4	59	6	39	18	34	1.78
40392885--40392968	42	2.0	42	97	0	159	33	20	23	22	1.97
40400962--40400993	11	2.9	11	100	0	64	28	28	9	34	1.88
40402677--40402757	34	2.5	33	86	6	112	11	30	0	58	1.33
40405917--40405954	20	1.9	20	94	0	67	50	0	23	26	1.50
40407522--40407578	28	2.0	28	86	0	78	19	31	15	33	1.93
40407560--40407648	33	2.7	33	81	6	110	21	23	13	41	1.88
40407767--40407887	51	2.4	51	84	0	143	21	28	13	37	1.91
40417046--40417419	33	11.3	33	81	0	352	47	16	21	14	1.82
40421368--40421413	24	1.9	24	82	8	58	43	2	2	52	1.25
40422677--40422739	8	7.9	8	75	15	51	22	4	1	71	1.13
40431897--40431932	12	3.0	12	91	0	54	2	22	63	11	1.39
40434575--40434640	13	5.5	13	67	17	52	46	12	0	40	1.41
40434575--40434643	34	2.1	33	86	2	93	44	11	0	43	1.40
40454004--40454069	30	2.2	30	94	0	114	24	27	3	45	1.68
40456942--40457095	43	3.6	42	85	3	202	31	24	18	25	1.97
40463317--40463413	45	2.2	45	87	5	135	35	28	5	30	1.79
40463393--40463425	16	2.1	16	100	0	66	21	36	6	36	1.78
40465225--40465465	7	33.9	7	70	12	80	43	33	0	22	1.57
40465778--40465870	40	2.3	40	84	0	114	29	19	18	33	1.95
40465952--40466038	40	2.2	40	82	0	102	28	21	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40465804--40466193	155	2.5	155	84	0	528	30	22	18	29	1.97
40466085--40466273	40	4.7	40	84	1	236	30	22	20	26	1.98
40473646--40474333	365	1.9	368	89	1	1087	36	11	16	35	1.85
40478098--40478137	13	3.1	13	82	10	55	15	17	15	52	1.75
40479021--40479066	19	2.5	20	75	13	53	50	4	10	34	1.57
40483668--40483929	23	11.0	23	65	20	110	35	4	26	33	1.77
40483634--40483974	72	4.7	72	98	0	655	34	5	27	31	1.81
40483907--40484029	47	2.6	49	76	7	137	34	8	30	26	1.86
40490287--40490380	28	3.4	28	74	9	79	50	15	3	30	1.60
40504048--40504164	59	1.9	59	84	8	155	42	3	3	50	1.36
40506320--40506435	43	2.7	43	86	2	153	40	23	13	22	1.90
40513552--40513814	88	3.0	88	99	0	517	23	15	19	40	1.90
40521895--40521936	19	2.2	19	86	0	57	19	33	16	30	1.94
40523553--40523581	12	2.3	13	94	5	51	0	24	0	75	0.80
40524535--40524584	23	2.2	23	85	7	66	64	12	2	22	1.37
40526568--40526620	25	2.1	25	92	0	88	28	1	11	58	1.43
40526840--40526866	4	6.8	4	100	0	54	51	22	0	25	1.48
40534198--40534226	5	5.8	5	100	0	58	62	0	0	37	0.96
40536029--40536082	20	2.7	20	91	0	81	55	1	20	22	1.53
40538548--40538589	20	2.1	20	100	0	84	38	23	19	19	1.93
40543834--40544329	27	18.4	27	83	2	539	19	16	22	41	1.90
40553132--40553193	30	2.1	30	87	6	90	48	11	8	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40556070--40556111	21	2.0	20	82	13	50	50	9	7	33	1.62
40556784--40556828	22	2.0	22	83	8	56	53	0	4	42	1.21
40559874--40560369	27	18.4	27	83	2	539	19	16	22	41	1.90
40570514--40570796	47	6.0	47	88	5	389	31	9	30	28	1.88
40570919--40570997	37	2.1	37	88	0	113	25	18	30	25	1.98
40578604--40578689	43	2.0	42	97	2	163	22	22	13	41	1.88
40580190--40580315	16	6.9	18	72	22	77	65	0	3	31	1.09
40580193--40580314	34	3.5	35	78	7	108	65	0	3	31	1.09
40582367--40582472	44	2.5	42	81	6	106	25	18	26	29	1.98
40582407--40582516	42	2.6	42	81	4	123	27	18	22	31	1.97
40590895--40590991	27	3.6	27	91	2	149	26	14	28	29	1.95
40590895--40591004	27	4.0	27	87	4	114	29	13	26	30	1.94
40597280--40597337	20	2.9	20	78	14	66	37	15	13	32	1.87
40597499--40597569	26	2.9	26	75	10	69	26	22	23	26	2.00
40597774--40597819	23	2.0	24	86	4	67	47	13	2	36	1.54
40600992--40601210	94	2.3	93	81	5	235	31	16	26	25	1.96
40600989--40601214	46	4.8	47	77	5	172	30	16	26	26	1.97
40603502--40603557	28	2.0	28	85	0	76	37	21	17	23	1.94
40608346--40608438	48	1.9	48	95	0	168	29	26	13	30	1.95
40612050--40612161	55	2.0	55	96	0	206	30	23	16	29	1.96
40616922--40616999	39	2.0	39	94	0	138	25	20	26	26	1.99
40620134--40620202	15	4.6	15	83	0	84	11	17	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40620125--40620204	30	2.7	30	81	11	92	12	17	13	56	1.68
40624408--40624443	18	2.0	18	94	0	63	41	5	22	30	1.76
40627250--40627415	48	3.5	47	80	6	140	28	20	27	23	1.99
40632809--40632855	20	2.4	20	85	3	69	31	21	14	31	1.94
40633106--40633149	22	2.0	23	95	4	81	34	15	31	18	1.92
40639182--40639238	20	2.8	20	74	10	62	38	15	12	33	1.85
40641311--40641577	81	3.3	81	87	3	376	41	20	13	24	1.87
40641311--40641577	27	9.9	27	86	1	329	41	20	13	24	1.87
40641279--40641577	54	5.5	54	82	3	350	42	20	13	24	1.88
40643394--40643432	20	1.9	20	84	5	51	25	28	20	25	1.99
40645058--40645221	42	3.9	42	80	9	172	28	28	14	28	1.95
40647493--40647532	21	2.0	20	85	5	53	50	27	2	20	1.61
40649256--40649388	29	4.7	29	81	6	155	33	29	15	22	1.94
40649256--40649388	57	2.3	57	84	5	153	33	29	15	22	1.94
40649394--40649544	40	3.8	40	91	2	225	25	31	22	20	1.98
40650258--40650473	48	4.5	48	94	0	369	29	28	8	33	1.87
40656036--40656107	26	2.7	27	72	12	67	45	25	6	22	1.77
40656037--40656353	54	5.9	54	83	6	365	40	22	8	29	1.82
40656089--40656353	27	9.8	27	89	2	370	40	21	7	30	1.82
40656335--40656458	27	4.6	27	80	7	144	40	18	13	27	1.88
40656119--40656447	81	4.1	81	81	5	245	40	20	9	30	1.84
40660009--40660108	42	2.4	40	81	5	101	31	27	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40660030--40660108	41	1.9	42	84	7	108	29	25	15	30	1.96
40666161--40666385	79	2.8	80	79	10	219	25	21	26	26	1.99
40666161--40666385	40	5.7	40	84	5	244	25	21	26	26	1.99
40666161--40666391	119	1.9	120	81	7	274	26	21	26	25	1.99
40666214--40666408	79	2.5	79	82	6	191	27	20	26	26	1.99
40678005--40678227	39	5.7	40	83	6	235	25	26	21	26	2.00
40680213--40680309	50	1.9	50	97	0	185	32	25	18	22	1.97
40686459--40686577	40	3.0	40	92	0	193	21	28	19	30	1.98
40688478--40688509	14	2.1	16	88	11	50	18	12	0	68	1.20
40689053--40689222	40	4.3	40	84	0	198	25	30	21	23	1.99
40689053--40689199	79	1.9	80	86	1	215	25	29	21	23	1.99
40693704--40693770	20	3.4	19	77	18	75	23	26	11	37	1.90
40693733--40693774	10	4.2	10	84	9	59	21	23	11	42	1.86
40699024--40699070	23	2.1	23	84	7	62	51	12	4	31	1.59
40704407--40704447	15	2.7	15	96	0	73	19	12	2	65	1.36
40704488--40704547	12	5.0	12	93	0	102	20	0	6	73	1.05
40705537--40705583	23	2.1	23	84	7	62	51	12	4	31	1.59
40716082--40716256	86	2.0	86	100	0	350	42	14	24	18	1.88
40716360--40716464	6	17.0	6	73	3	75	8	18	2	70	1.25
40716343--40716398	21	2.7	21	72	5	51	10	17	1	69	1.26
40716360--40716469	18	5.9	18	73	5	94	10	17	2	70	1.27
40716348--40716463	12	9.2	12	73	16	58	7	18	3	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40718271--40718310	19	2.0	20	90	4	64	47	12	25	15	1.80
40721025--40721099	33	2.2	34	92	2	125	44	13	6	36	1.70
40721090--40721116	9	3.0	9	100	0	54	55	11	0	33	1.35
40723007--40723058	18	2.9	18	82	5	61	9	19	0	71	1.13
40724859--40724928	30	2.3	30	100	0	140	38	15	10	35	1.81
40724876--40724940	30	2.2	30	83	5	78	35	16	12	35	1.87
40734855--40734964	34	3.2	34	96	2	195	40	12	10	36	1.79
40735537--40735646	6	18.0	6	69	9	71	6	18	2	72	1.18
40735605--40735652	18	2.7	18	75	18	55	2	16	0	81	0.79
40737922--40737963	20	2.1	20	90	0	66	38	16	19	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187