genome.fa.s15.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  104  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30443455--30444015	44	12.8	43	74	7	411	26	19	20	33	1.97
30443455--30444015	91	6.4	90	80	7	462	26	19	20	33	1.97
30443464--30444029	85	6.4	88	79	7	283	26	19	21	32	1.97
30443455--30444035	129	4.4	128	80	7	583	25	19	20	33	1.97
30444109--30444477	49	7.5	49	67	4	220	25	20	20	33	1.97
30444056--30444539	99	4.9	99	87	0	680	26	22	20	31	1.98
30445451--30445484	16	2.1	16	89	10	52	0	14	2	82	0.79
30445435--30445485	19	2.6	19	79	14	50	0	15	3	80	0.86
30447955--30448029	23	3.3	23	88	3	125	21	20	26	32	1.97
30448159--30448231	38	1.9	37	86	8	103	45	1	21	31	1.61
30458225--30458271	23	2.0	24	91	4	78	29	6	14	48	1.69
30468125--30468262	75	1.9	74	89	1	213	29	19	10	40	1.84
30470792--30470846	24	2.2	25	83	3	67	54	3	0	41	1.18
30471213--30471239	7	3.9	7	100	0	54	59	0	11	29	1.32
30471619--30471659	20	2.0	20	85	0	55	63	4	7	24	1.40
30481758--30481798	21	2.0	21	90	0	64	19	29	21	29	1.98
30488050--30488085	16	2.2	16	100	0	72	25	0	36	38	1.56
30488066--30488156	45	2.0	45	85	2	121	27	6	28	37	1.82
30488301--30488342	15	2.7	16	82	14	52	52	2	0	45	1.13
30488310--30488351	15	2.9	15	82	10	52	52	0	0	47	1.00
30488441--30488475	18	2.0	17	88	5	52	54	0	0	45	0.99
30488480--30488678	66	3.2	66	71	19	235	48	5	4	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30488561--30488595	18	2.0	17	88	5	52	54	0	0	45	0.99
30488307--30488716	120	3.4	120	96	0	723	49	4	2	43	1.37
30488657--30488940	91	3.0	93	86	6	317	47	3	3	45	1.37
30488757--30488817	28	2.2	28	85	5	81	50	3	0	45	1.17
30488764--30488907	47	3.1	46	65	23	113	49	4	2	44	1.33
30488732--30488944	91	2.3	91	95	0	372	46	4	3	46	1.40
30488782--30488921	47	3.0	47	67	17	139	48	4	2	44	1.37
30502456--30502613	41	3.9	41	82	1	156	30	10	18	40	1.85
30513773--30513828	21	2.7	21	88	0	85	25	7	37	30	1.82
30514240--30514284	17	2.6	17	78	0	63	51	0	0	48	1.00
30519168--30519209	6	6.8	6	88	2	57	54	0	26	19	1.44
30527253--30527312	25	2.4	24	78	8	66	16	10	8	65	1.47
30534686--30534719	14	2.3	15	95	5	61	26	5	0	67	1.13
30536246--30536308	29	2.1	31	85	5	85	38	6	1	53	1.36
30536246--30536308	30	2.1	30	85	5	83	38	6	1	53	1.36
30536238--30536314	30	2.6	28	78	11	82	40	6	1	51	1.36
30537284--30537324	13	3.1	13	82	6	55	0	19	7	73	1.07
30537289--30537331	14	3.2	14	83	9	54	0	16	9	74	1.06
30537288--30537331	12	3.4	13	84	6	54	0	15	11	72	1.11
30538086--30538128	15	2.8	16	79	10	54	37	0	2	60	1.10
30542763--30542789	13	2.1	13	100	0	54	37	22	25	14	1.93
30545516--30546474	158	6.0	158	93	1	1580	54	8	8	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30548617--30548676	22	2.8	22	90	9	90	10	28	23	38	1.87
30556015--30556047	14	2.3	15	89	5	50	0	24	0	75	0.80
30556612--30556755	63	2.3	62	81	8	159	21	19	29	29	1.98
30564081--30564163	43	1.9	44	90	2	132	24	22	1	51	1.55
30564816--30564856	19	2.2	18	86	4	55	34	17	0	48	1.47
30575881--30575912	15	2.3	15	89	10	50	40	18	0	40	1.51
30576164--30576225	20	3.3	20	63	28	55	35	16	1	46	1.56
30576162--30576232	35	2.0	35	97	0	133	36	16	1	45	1.57
30576788--30576856	18	4.0	18	70	14	56	33	20	0	46	1.51
30576813--30576890	41	1.9	40	84	2	102	38	24	0	37	1.56
30577438--30577462	11	2.3	11	100	0	50	28	20	0	52	1.47
30577984--30578009	3	8.7	3	100	0	52	69	30	0	0	0.89
30579645--30579681	13	2.8	13	100	0	74	8	21	37	32	1.83
30579742--30579926	91	2.0	91	95	0	334	41	23	6	28	1.79
30594697--30594741	22	2.0	22	91	0	72	48	15	17	17	1.81
30597091--30597120	16	1.9	15	93	6	51	46	16	10	26	1.78
30600178--30600367	50	3.7	50	82	4	191	24	28	20	26	1.99
30601162--30601199	17	2.2	17	90	0	58	39	18	21	21	1.93
30607690--30607936	50	4.8	50	79	4	201	23	26	21	29	1.99
30610155--30610434	138	2.0	137	88	2	409	46	5	7	40	1.56
30610452--30610619	74	2.3	75	86	3	232	34	13	7	44	1.71
30613053--30613091	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30613382--30613488	50	2.1	50	82	0	133	19	28	23	28	1.98
30622471--30622513	20	2.0	20	86	13	59	30	4	13	51	1.62
30624095--30624428	167	2.0	165	97	1	623	40	13	17	28	1.87
30627863--30627896	13	2.6	13	86	13	52	67	0	14	17	1.23
30627863--30627895	12	2.5	13	90	9	50	66	0	15	18	1.25
30635385--30635779	56	7.6	48	84	5	234	24	26	20	29	1.99
30635432--30635730	100	2.9	100	80	9	278	23	27	20	28	1.99
30635574--30635783	56	3.8	56	96	0	357	25	27	17	29	1.97
30644843--30644875	17	1.9	17	93	0	57	21	15	6	57	1.59
30652582--30652622	20	2.0	20	100	0	82	46	19	0	34	1.50
30656814--30656911	42	2.3	42	78	0	115	30	20	24	24	1.98
30660758--30660806	23	2.1	23	100	0	98	36	4	32	26	1.75
30668261--30668315	20	2.8	20	80	0	65	29	18	23	29	1.98
30671162--30671209	19	2.7	18	81	12	55	33	2	0	64	1.05
30671171--30671209	19	2.1	18	90	4	60	33	0	0	66	0.92
30673841--30674022	88	2.0	90	87	2	260	37	20	8	34	1.82
30674037--30674147	9	12.1	9	76	17	86	63	0	1	33	1.11
30674025--30674069	18	2.4	19	81	11	56	71	0	2	26	0.98
30674025--30674141	10	12.6	9	73	14	69	65	0	2	30	1.11
30674025--30674141	46	2.5	47	77	10	125	65	0	2	30	1.11
30674047--30674186	56	2.5	55	80	6	149	62	1	4	31	1.23
30674361--30674386	10	2.6	10	100	0	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30674426--30674486	20	3.1	20	68	11	54	34	1	0	63	1.04
30674371--30674517	46	3.2	47	75	12	155	40	2	0	57	1.10
30674434--30674482	18	2.6	19	78	12	57	34	2	0	63	1.06
30674434--30674483	19	2.7	17	77	17	55	34	2	0	64	1.05
30678671--30678710	3	13.3	3	94	0	71	67	2	0	30	1.04
30679797--30680341	187	2.9	184	90	3	869	42	20	11	25	1.85
30683228--30683254	10	2.7	10	100	0	54	44	11	0	44	1.39
30687508--30687637	50	2.6	50	82	0	152	28	23	28	20	1.98
30689923--30689972	25	2.0	25	84	7	66	34	0	2	64	1.05
30690980--30691039	30	2.0	30	90	0	93	56	8	3	31	1.45
30691019--30691051	17	1.9	17	88	11	50	69	3	0	27	1.03
30691072--30691114	22	2.0	22	85	0	59	55	9	13	20	1.66
30692507--30692554	23	2.0	23	84	8	60	25	6	2	66	1.26
30705368--30705418	25	2.1	24	81	3	57	66	3	0	29	1.09
30705375--30705513	74	1.9	73	90	1	224	57	9	0	32	1.36
30713369--30713393	3	8.3	3	100	0	50	32	0	0	68	0.90
30715521--30715588	34	2.0	34	100	0	136	38	20	8	32	1.84
30716043--30716074	15	2.0	17	88	11	50	81	3	15	0	0.82
30718312--30718393	25	3.3	25	86	5	103	28	21	20	29	1.98
30721705--30721813	42	2.6	43	83	1	139	33	16	23	25	1.96
30728199--30728284	41	2.1	41	80	8	95	31	25	16	26	1.96
30736949--30737220	39	7.1	39	80	4	270	33	16	32	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30737071--30737167	19	5.1	19	66	12	72	32	17	35	14	1.90
30738799--30738831	16	2.0	17	88	5	50	39	0	3	57	1.14
30739851--30739900	24	2.2	22	82	7	55	64	6	0	30	1.18
30739950--30739994	23	2.0	23	86	8	65	53	2	0	44	1.13
30740196--30740247	26	2.0	26	81	7	61	38	21	9	30	1.85
30743294--30743327	16	2.2	15	89	5	50	55	0	0	44	0.99
30751042--30751089	10	4.6	10	85	10	51	62	4	0	33	1.14
30754415--30754503	47	1.9	46	88	2	133	32	12	25	29	1.92
30755976--30756053	25	3.1	25	94	0	138	37	14	11	37	1.82
30765359--30765416	26	2.2	26	90	0	89	37	8	15	37	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187