genome.fa.s15.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  57797951

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  34  of  187  ( 22379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9902512--9902559	22	2.2	21	81	3	60	20	0	31	47	1.50
9902512--9902615	14	7.3	14	71	12	68	20	0	34	44	1.58
9902863--9902900	14	2.7	15	88	12	62	26	0	31	42	1.56
9902866--9902964	21	4.7	21	74	5	74	24	0	38	37	1.56
9902919--9902952	14	2.4	14	90	0	50	23	0	44	32	1.54
9903294--9903330	17	2.2	17	90	0	56	35	0	16	48	1.46
9903415--9903442	14	2.0	14	100	0	56	50	0	0	50	1.00
9903561--9903788	83	2.8	82	83	8	291	42	14	15	27	1.86
9908202--9908292	43	2.1	43	83	2	112	37	10	8	42	1.71
9908556--9908966	43	9.6	42	78	6	163	26	15	29	27	1.96
9908568--9908966	86	4.7	86	80	2	383	26	16	30	27	1.96
9908570--9909004	129	3.4	128	77	4	419	27	16	29	26	1.97
9909327--9909453	25	5.1	25	92	1	211	33	16	29	19	1.94
9911626--9911677	26	2.0	26	96	0	95	50	17	3	28	1.64
9917758--9917806	17	2.9	17	79	11	57	34	2	4	59	1.28
9919436--9919569	46	2.9	45	84	4	169	29	20	22	28	1.98
9946235--9946313	39	2.0	39	95	0	140	31	8	13	45	1.75
9948687--9948766	41	2.0	41	97	0	151	38	23	3	33	1.73
9951744--9951773	14	2.1	14	93	0	51	43	26	23	6	1.78
9964431--9965069	44	14.7	42	71	14	261	29	19	22	28	1.98
9964379--9965064	217	3.2	217	90	0	1097	29	19	21	28	1.98
9980665--9980730	34	1.9	34	87	6	98	46	9	7	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9981134--9981207	34	2.2	33	81	13	82	52	10	8	28	1.64
9982023--9982092	12	6.0	11	72	18	61	67	2	1	28	1.14
9982027--9982095	34	2.0	35	97	2	131	62	2	2	31	1.25
9985314--9985422	41	2.6	41	80	7	114	28	18	24	28	1.98
9996728--9996764	16	2.4	16	91	8	60	16	37	0	45	1.47
9996763--9996863	51	1.9	53	84	11	138	25	22	2	48	1.65
9998802--9998838	16	2.4	16	91	8	60	16	37	0	45	1.47
9998837--9998937	51	1.9	53	84	11	138	25	22	2	48	1.65
10000477--10000516	18	2.2	18	86	0	53	17	30	7	45	1.76
10000758--10000804	21	2.2	21	85	7	60	40	31	17	10	1.83
10001068--10001516	22	20.8	22	82	6	499	43	29	0	26	1.57
10001070--10001513	43	10.3	43	82	8	501	43	29	0	26	1.57
10001068--10001516	109	4.2	108	83	7	518	43	29	0	26	1.57
10004690--10005257	126	4.5	125	86	4	759	28	22	18	30	1.97
10018846--10018878	17	1.9	17	93	0	57	0	15	0	84	0.61
10019416--10019489	30	2.5	30	88	4	114	41	0	21	36	1.53
10019823--10021123	75	17.1	76	87	2	1667	34	19	18	27	1.95
10019853--10021128	379	3.4	377	87	2	1752	34	20	18	27	1.95
10021963--10022036	39	1.9	38	83	8	96	17	17	16	48	1.81
10024152--10024258	41	2.6	41	95	0	187	24	16	22	36	1.94
10030155--10030233	38	2.1	39	83	7	99	21	22	16	39	1.92
10037991--10038015	3	8.3	3	100	0	50	32	0	36	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10038561--10038589	13	2.1	14	93	6	51	24	0	6	68	1.13
10041125--10041159	13	2.6	14	91	8	56	74	0	25	0	0.82
10041125--10041159	17	2.1	17	89	10	54	74	0	25	0	0.82
10043470--10043541	29	2.6	27	79	12	76	54	0	4	41	1.20
10043464--10043527	26	2.4	27	82	7	78	53	0	4	42	1.22
10045141--10045506	124	2.9	125	88	2	540	29	14	21	34	1.93
10045995--10046250	125	2.1	124	89	2	399	29	14	21	35	1.92
10048842--10049463	23	27.1	23	77	14	556	27	0	23	49	1.50
10048851--10049466	91	6.7	91	86	6	777	26	0	23	49	1.50
10048874--10049469	68	8.7	68	79	10	526	26	0	24	49	1.51
10049247--10049350	51	2.0	51	92	0	172	26	0	21	51	1.47
10049509--10049556	25	1.9	25	100	0	96	39	14	0	45	1.45
10049989--10050024	18	2.0	18	94	0	63	38	8	27	25	1.84
10051512--10051553	11	3.8	11	93	0	66	50	7	23	19	1.72
10051730--10051770	22	1.9	21	95	5	73	14	34	26	24	1.94
10052840--10053067	43	5.3	43	88	4	318	28	31	18	21	1.97
10053341--10053431	43	2.1	43	86	6	123	45	9	9	35	1.71
10060303--10060457	41	3.8	41	92	3	251	27	31	24	16	1.96
10060303--10060457	81	1.9	82	90	4	251	27	31	24	16	1.96
10060493--10060626	40	3.4	38	82	10	155	21	20	20	37	1.95
10063474--10063515	15	2.9	15	82	10	52	52	0	0	47	1.00
10065875--10065901	13	2.1	13	100	0	54	37	18	14	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10068411--10068467	27	2.1	27	100	0	114	28	17	10	43	1.82
10078087--10078137	27	1.9	26	84	11	68	41	5	3	49	1.45
10078511--10078547	19	1.9	19	88	0	56	45	0	5	48	1.25
10078528--10078564	14	2.5	15	86	8	58	45	0	5	48	1.25
10084735--10084788	27	2.0	26	82	10	65	29	1	25	42	1.66
10092596--10092645	10	5.0	10	83	13	59	58	2	2	38	1.21
10098752--10098783	15	2.1	15	100	0	64	34	6	6	53	1.51
10101899--10101974	39	2.0	38	94	2	134	28	14	26	30	1.95
10106648--10107229	290	2.0	289	99	0	1155	32	13	15	38	1.86
10112305--10112338	8	4.2	8	96	0	59	14	0	8	76	1.01
10115989--10116078	18	4.9	18	86	4	110	26	10	20	43	1.83
10115994--10116078	9	9.4	9	78	0	98	27	9	20	43	1.82
10116233--10116268	16	2.2	16	100	0	72	25	0	36	38	1.56
10116504--10116538	18	2.0	17	88	5	52	54	0	0	45	0.99
10116487--10116749	120	2.2	120	100	0	526	48	5	1	44	1.35
10116624--10116658	18	2.0	17	88	5	52	54	0	0	45	0.99
10119779--10119888	33	3.3	33	81	11	136	31	8	17	42	1.78
10119835--10119988	51	3.0	51	98	1	292	28	7	18	45	1.77
10126852--10126898	21	2.2	22	92	3	78	21	19	38	21	1.94
10129087--10129137	21	2.4	21	80	6	59	37	13	0	49	1.43
10131798--10131822	3	8.3	3	100	0	50	68	0	0	32	0.90
10132235--10132331	25	4.2	21	67	27	63	58	6	3	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10136691--10136865	46	3.8	46	91	0	278	37	8	22	30	1.84
10142563--10142771	43	4.9	43	90	0	310	32	27	17	22	1.97
10147149--10147188	16	2.6	16	88	7	57	45	0	35	20	1.51
10147239--10147745	146	3.5	146	94	3	909	24	16	15	43	1.87
10147741--10147908	72	2.3	72	85	3	221	26	23	23	25	2.00
10147975--10148000	12	2.2	12	100	0	52	46	30	15	7	1.74
10153297--10153336	14	2.9	14	82	17	57	70	0	0	30	0.88
10153839--10153877	17	2.3	17	90	0	60	61	0	7	30	1.24
10153926--10153969	18	2.6	18	86	13	58	13	11	4	70	1.31
10154355--10154430	3	25.3	3	71	10	57	38	1	1	59	1.14
10154347--10154425	12	6.3	13	73	16	69	37	1	1	59	1.14
10155070--10155103	17	1.9	18	88	5	52	41	0	23	35	1.55
10161783--10161844	33	1.9	34	84	12	87	30	0	4	64	1.14
10162086--10162121	17	2.1	17	89	0	54	77	0	22	0	0.76
10162479--10162512	17	1.9	18	88	5	52	41	0	23	35	1.55
10164317--10164346	15	2.0	15	93	0	51	26	3	0	70	1.03
10166533--10166579	20	2.3	21	85	3	69	55	10	21	12	1.67
10173881--10173932	26	2.0	26	100	0	104	15	30	23	30	1.95
10175299--10175353	20	2.7	19	81	10	56	70	10	18	0	1.15
10176545--10176574	13	2.3	13	94	0	51	23	3	0	73	0.98
10176766--10176799	8	4.2	8	92	0	59	8	0	14	76	1.01
10179709--10180108	132	3.0	131	90	2	581	33	20	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10179709--10180169	132	3.5	131	83	7	508	32	20	22	25	1.98
10180117--10180215	45	2.2	44	82	5	110	25	23	23	28	2.00
10180395--10180565	50	3.4	49	73	4	144	33	20	21	24	1.97
10181476--10181521	9	5.1	9	91	0	74	45	10	10	32	1.74
10189770--10189806	13	2.9	14	88	11	53	0	21	2	75	0.92
10189770--10189829	25	2.4	26	81	10	63	3	21	5	70	1.22
10189898--10189989	46	2.0	46	97	0	175	40	5	10	43	1.63
10199954--10200016	1	63.0	1	77	0	63	88	7	1	1	0.63
10199954--10200015	20	2.9	21	90	9	90	88	8	1	1	0.64
10201462--10201650	88	2.2	87	85	2	245	29	22	24	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187