genome.fa.s223.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  11  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1703075--1703157	30	2.7	30	79	3	85	50	2	3	43	1.32
1704600--1704628	6	4.8	6	100	0	58	0	51	13	34	1.42
1705848--1705887	21	1.9	21	89	0	62	22	5	20	52	1.65
1726991--1727054	26	2.5	26	84	0	83	20	39	18	21	1.93
1727072--1727145	25	2.9	26	83	4	96	21	24	21	32	1.98
1727161--1727217	3	19.0	3	96	0	105	31	0	1	66	1.02
1727636--1727683	23	2.0	24	84	4	62	22	8	10	58	1.58
1727620--1727684	33	2.0	32	81	3	76	23	7	10	58	1.57
1728074--1728106	14	2.4	14	100	0	66	21	0	0	78	0.75
1728068--1728102	18	1.9	18	94	0	61	17	2	0	80	0.84
1739381--1740172	89	8.9	89	75	4	544	20	19	14	45	1.84
1739354--1740160	178	4.5	177	76	2	688	20	19	14	46	1.84
1739203--1740123	267	3.4	266	78	4	852	20	19	14	45	1.85
1740302--1740383	26	3.2	26	79	6	94	21	28	19	30	1.98
1741498--1741548	16	3.3	16	83	5	70	88	9	1	0	0.60
1745666--1745695	9	3.2	9	90	9	51	80	0	0	20	0.72
1745666--1745695	10	3.1	10	95	4	53	80	0	0	20	0.72
1749132--1749175	20	2.3	19	92	4	70	31	0	0	68	0.90
1749132--1749177	10	4.7	10	81	5	58	34	0	0	65	0.93
1749220--1749272	26	2.0	25	82	13	63	64	3	0	32	1.12
1749445--1749493	2	24.5	2	95	0	89	46	0	2	51	1.12
1749721--1749761	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1750520--1750563	12	3.6	12	84	3	61	25	2	2	70	1.10
1754417--1754466	25	2.0	25	96	0	91	40	10	16	34	1.81
1760079--1760153	21	3.5	21	67	13	53	50	0	8	41	1.32
1760073--1760164	44	2.1	44	85	4	123	48	0	7	43	1.31
1760887--1760929	16	2.4	18	88	11	63	72	11	2	13	1.22
1760914--1760950	18	2.1	18	94	0	65	54	18	5	21	1.64
1765683--1765747	21	3.0	22	78	17	64	23	6	0	70	1.09
1767365--1767578	58	3.7	57	84	9	283	45	6	10	37	1.65
1774337--1774383	24	2.0	24	87	8	69	21	10	8	59	1.57
1776014--1776054	16	2.6	15	88	7	55	2	21	2	73	1.07
1776817--1776941	41	3.0	41	70	13	130	38	11	5	44	1.64
1778803--1778848	24	1.9	24	82	8	58	15	8	10	65	1.47
1779620--1779692	26	2.6	28	81	18	89	49	0	2	47	1.15
1779687--1779738	6	8.7	6	97	0	77	59	0	0	40	0.97
1783488--1783785	59	5.1	58	77	6	264	37	9	6	45	1.63
1783484--1783764	118	2.4	118	82	5	347	37	10	6	45	1.64
1783780--1783833	15	3.5	14	76	18	54	75	0	3	20	0.95
1783782--1783833	10	5.1	10	76	21	54	75	0	3	21	0.97
1783802--1783847	20	2.3	19	82	17	58	76	0	8	15	1.02
1783844--1783897	16	3.3	16	78	12	56	64	5	0	29	1.16
1784772--1784862	21	4.2	20	75	13	65	58	2	5	34	1.33
1784751--1784839	41	2.1	41	83	6	108	58	2	5	33	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784915--1785036	4	29.5	4	73	17	54	71	1	2	24	1.07
1784925--1785035	25	4.2	25	75	18	102	72	1	1	24	1.05
1785217--1785678	42	10.9	41	78	7	406	39	18	15	26	1.90
1785221--1785678	85	5.4	85	86	5	525	40	18	15	26	1.90
1786665--1786713	20	2.5	20	80	6	64	10	14	0	75	1.04
1786688--1786718	8	3.9	8	100	0	62	9	12	0	77	0.99
1794423--1795039	205	3.0	205	94	0	1072	29	22	12	35	1.91
1796971--1797252	59	4.8	60	80	8	310	36	10	8	43	1.70
1796971--1797255	118	2.4	117	87	4	394	37	10	8	43	1.70
1797270--1797321	10	5.1	10	76	21	54	75	0	3	21	0.97
1797290--1797335	20	2.3	19	82	17	58	76	0	8	15	1.02
1797347--1797377	16	2.0	15	93	6	53	67	0	0	32	0.91
1798230--1798310	41	1.9	41	85	9	110	64	4	3	27	1.31
1798273--1798321	22	2.3	21	82	10	55	59	4	4	32	1.35
1798385--1798504	7	17.0	7	72	22	58	70	3	2	23	1.14
1798453--1798505	6	8.5	6	80	12	54	77	3	0	18	0.92
1798444--1798503	30	2.0	31	83	9	79	75	3	0	21	0.95
1800277--1800307	16	1.9	16	93	0	53	67	0	9	22	1.19
1801193--1801237	3	15.0	3	100	0	90	66	0	0	33	0.92
1806938--1806972	16	2.1	18	84	15	56	54	0	0	45	0.99
1806939--1806993	17	3.6	16	75	25	64	50	0	0	49	1.00
1806980--1807041	7	8.2	8	76	20	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1806980--1807041	23	2.8	22	81	13	74	67	0	0	32	0.91
1806980--1807037	12	5.2	11	75	20	50	68	0	0	31	0.89
1807990--1808028	2	19.5	2	100	0	78	51	0	0	48	1.00
1808063--1808127	27	2.4	26	75	10	67	44	21	3	30	1.67
1810141--1810179	14	2.8	14	84	0	51	76	0	12	10	1.01
1822818--1822843	7	3.7	7	100	0	52	57	0	0	42	0.98
1823070--1823105	3	12.0	3	100	0	72	33	0	0	66	0.92
1824406--1824441	19	1.9	18	94	5	63	13	36	16	33	1.89
1826709--1826738	5	6.0	5	96	0	51	83	0	16	0	0.65
1829129--1829163	17	2.0	18	88	5	54	28	2	8	60	1.41
1830261--1830345	6	14.2	6	96	0	62	67	16	0	16	1.24
1830258--1830307	3	16.7	3	95	0	91	68	30	0	2	1.01
1830306--1830462	3	54.7	3	75	13	134	59	1	5	33	1.30
1830695--1830889	55	3.5	54	80	7	187	44	12	20	23	1.85
1831805--1831903	43	2.4	41	84	3	117	17	17	13	52	1.75
1834145--1834184	18	2.2	18	95	0	71	27	15	22	35	1.94
1842574--1842635	22	2.7	23	82	14	58	70	1	6	20	1.17
1842598--1842635	11	3.5	11	83	16	53	78	0	5	15	0.91
1842583--1842635	5	9.6	5	77	18	52	73	1	5	18	1.12
1842639--1842686	13	3.5	13	78	18	53	75	2	6	16	1.11
1842596--1842688	28	3.4	27	74	14	84	75	2	6	16	1.11
1843002--1843042	21	2.0	21	90	0	64	36	19	0	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842999--1843045	10	4.6	10	81	5	58	40	21	0	38	1.53
1843511--1843660	3	52.0	3	75	7	87	60	6	5	28	1.43
1843607--1843668	21	3.0	21	88	4	81	66	4	4	24	1.31
1844530--1844824	153	1.9	151	93	2	502	34	18	10	36	1.85
1846631--1846713	41	2.0	41	97	0	157	34	16	12	36	1.86
1851500--1851532	15	2.3	15	89	5	50	63	9	0	27	1.24
1851436--1851713	71	4.0	71	78	14	310	46	6	11	35	1.65
1851441--1851892	133	3.4	131	85	5	597	47	5	11	34	1.64
1851779--1851896	60	2.0	59	88	1	173	51	7	10	30	1.63
1862375--1862406	9	3.7	9	95	4	57	84	0	0	15	0.63
1863429--1863568	44	3.2	44	82	0	172	23	15	16	44	1.86
1864273--1864301	8	3.8	8	90	9	51	13	0	0	86	0.58
1864278--1864315	20	1.9	20	94	0	67	10	0	2	86	0.66
1864273--1864301	15	1.9	15	100	0	58	13	0	0	86	0.58
1864276--1864315	7	5.9	7	85	5	55	10	0	2	87	0.63
1865308--1865555	71	3.6	70	72	13	237	46	6	11	35	1.66
1865299--1865740	133	3.3	130	83	7	536	48	6	10	34	1.63
1865521--1865643	61	2.0	61	80	3	140	52	6	6	34	1.53
1865622--1865740	60	2.0	60	95	1	213	52	8	9	30	1.63
1869873--1870067	95	2.0	96	87	8	277	40	8	9	41	1.69
1870202--1870292	21	4.4	21	77	5	87	34	7	8	49	1.62
1870250--1870318	11	6.5	10	77	9	57	39	5	7	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870256--1870314	21	2.8	21	81	2	64	38	6	5	49	1.52
1870515--1870610	21	4.6	21	79	8	99	34	9	12	43	1.75
1871024--1871191	22	7.7	22	75	6	128	39	5	5	48	1.52
1871139--1871243	51	2.0	52	81	5	124	39	10	2	47	1.53
1871479--1871529	22	2.3	22	87	12	77	31	3	5	58	1.40
1871482--1871540	22	2.8	21	85	12	68	33	5	5	55	1.43
1871827--1871906	22	3.6	21	80	6	70	38	12	2	46	1.55
1874820--1875014	95	2.0	96	89	7	293	40	8	9	42	1.68
1875149--1875239	21	4.4	21	77	5	87	34	7	8	49	1.62
1875197--1875265	11	6.5	10	77	9	57	39	5	7	47	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190