Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  23  of  190  ( 22769 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3682545--3682592
21
2.3
20
85
7
60
29
2
6
62
1.31
3687790--3687856
19
3.8
18
71
15
59
65
0
2
31
1.07
3687931--3687960
15
2.1
14
93
6
51
50
0
0
50
1.00
3688147--3688187
16
2.4
18
84
15
52
60
7
2
29
1.36
3691018--3691108
36
2.5
36
80
7
96
42
0
3
53
1.17
3691144--3691187
13
3.2
13
80
6
52
27
6
0
65
1.17
3691143--3691197
28
2.0
27
86
13
78
29
5
0
65
1.15
3691139--3691200
23
2.7
22
83
11
72
30
4
0
64
1.14
3693197--3693342
73
2.0
73
81
5
170
52
8
8
30
1.63
3693403--3693494
33
2.7
35
81
15
104
58
0
1
40
1.05
3694789--3694817
12
2.4
12
100
0
58
82
0
6
10
0.83
3695285--3695335
13
4.0
13
77
12
52
64
0
0
35
0.94
3695285--3695333
25
2.0
25
84
8
64
65
0
0
34
0.93
3698101--3698143
22
2.0
22
81
9
52
46
2
2
48
1.27
3698177--3698213
11
3.3
11
88
7
56
70
2
0
27
1.01
3698609--3698673
24
2.8
24
77
13
73
4
15
0
80
0.88
3698607--3698652
17
2.8
17
96
3
85
4
8
0
86
0.68
3698606--3698659
16
3.3
15
82
14
63
3
12
0
83
0.78
3698618--3698673
23
2.4
23
78
0
67
5
16
0
78
0.92
3700987--3701215
114
2.0
114
100
0
458
16
25
7
50
1.72
3702901--3702934
17
2.1
17
88
5
52
38
0
0
61
0.96
3702883--3702944
23
2.6
24
77
10
65
40
0
1
58
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3709062--3709094
11
3.0
11
100
0
66
36
0
18
45
1.49
3712030--3712098
27
2.5
27
85
4
84
53
4
0
42
1.20
3712066--3712110
20
2.4
18
79
13
54
51
4
0
44
1.21
3713540--3713600
26
2.3
27
83
8
72
27
0
4
67
1.11
3714618--3714674
24
2.4
24
96
0
105
52
5
7
35
1.51
3714749--3714777
9
3.3
9
95
4
51
10
0
0
89
0.48
3714776--3715438
49
13.9
46
79
11
525
36
21
12
29
1.91
3714780--3715397
143
4.3
144
80
7
657
35
21
13
29
1.91
3714778--3715447
95
7.0
95
78
9
546
36
21
12
29
1.91
3719700--3719748
16
3.3
15
75
21
50
63
2
18
16
1.41
3726471--3726514
16
3.0
15
83
12
56
4
2
9
84
0.85
3726489--3726513
13
1.9
13
100
0
50
0
0
12
88
0.53
3726472--3726516
21
2.2
20
84
11
56
2
2
8
86
0.73
3728356--3728402
9
5.1
9
78
14
51
0
2
12
85
0.70
3728817--3728860
3
14.7
3
95
0
79
70
0
0
29
0.88
3729061--3729089
10
2.7
11
89
10
51
41
0
0
58
0.98
3732156--3732226
29
2.4
30
81
9
83
47
2
2
46
1.31
3732252--3732320
28
2.4
27
83
9
84
55
2
0
42
1.15
3734937--3734968
5
6.4
5
100
0
64
81
0
0
18
0.70
3735133--3735174
16
2.6
17
85
7
61
38
0
4
57
1.20
3735085--3735351
74
3.6
74
91
2
439
37
7
4
50
1.50
3735206--3735249
16
2.6
17
85
7
63
38
0
4
56
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3735277--3735316
17
2.4
16
91
4
62
30
0
2
67
1.04
3735280--3735322
16
2.6
17
85
7
63
37
0
4
58
1.19
3735296--3735499
58
3.5
58
77
11
202
37
7
6
48
1.58
3735505--3735539
18
1.9
18
88
11
54
85
0
2
11
0.69
3735580--3735623
13
3.2
13
87
6
61
79
2
0
18
0.83
3735580--3735623
5
9.6
5
85
11
51
79
2
0
18
0.83
3735564--3735617
18
2.9
18
83
13
65
74
1
1
22
1.02
3736640--3736986
44
8.1
44
70
16
196
47
18
10
23
1.79
3736658--3736804
80
1.9
78
86
11
210
51
17
8
23
1.73
3736778--3736986
45
4.7
45
77
12
209
48
18
9
22
1.77
3736778--3736987
86
2.4
89
80
8
234
48
18
9
23
1.77
3744739--3744777
15
2.7
15
88
4
53
48
7
23
20
1.75
3749618--3749649
16
2.0
16
93
0
55
34
0
6
59
1.23
3749683--3749728
16
2.7
17
86
10
67
39
0
6
54
1.26
3749754--3749792
16
2.4
16
91
8
62
28
0
2
69
1.02
3749575--3749849
149
1.9
147
92
3
462
36
8
4
50
1.52
3749770--3750083
57
5.4
58
81
10
340
36
10
4
47
1.60
3749575--3749849
74
3.7
75
88
7
420
36
8
4
50
1.52
3749770--3750083
115
2.7
114
81
8
366
36
10
4
47
1.60
3750110--3750208
5
18.8
5
76
19
55
71
3
3
22
1.13
3750109--3750140
17
1.9
16
93
6
55
81
0
3
15
0.82
3750162--3750207
8
5.2
9
85
15
53
76
0
0
23
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3750979--3751050
21
3.4
20
75
21
67
69
4
1
25
1.14
3756022--3756079
24
2.3
26
85
8
77
53
1
1
43
1.21
3761455--3761479
13
1.9
13
100
0
50
24
0
4
72
1.02
3762473--3762506
2
17.0
2
93
0
59
47
0
0
52
1.00
3769250--3769311
32
2.0
31
87
3
88
46
4
0
48
1.23
3770526--3770564
16
2.4
16
86
4
51
41
0
10
48
1.37
3771233--3771282
16
3.0
16
80
8
55
34
0
0
66
0.92
3771256--3771294
8
4.9
8
81
12
53
33
0
0
66
0.92
3771236--3771297
16
3.7
16
75
14
54
33
0
0
66
0.92
3771280--3771329
20
2.3
20
86
10
64
46
0
0
54
1.00
3771284--3771332
17
2.8
18
81
12
66
48
0
0
51
1.00
3772007--3772040
15
2.3
15
89
0
50
41
2
14
41
1.61
3772953--3772992
20
2.0
20
90
4
64
42
17
0
40
1.49
3774034--3774135
35
3.0
35
80
9
122
45
22
12
19
1.84
3774599--3774754
64
2.4
64
81
8
167
49
9
17
23
1.76
3777726--3777756
16
1.9
16
100
0
62
35
0
19
45
1.51
3780371--3780526
84
1.9
84
90
0
249
55
10
10
24
1.64
3782154--3782178
13
1.9
13
100
0
50
16
0
0
84
0.63
3787538--3787576
10
4.1
10
80
12
55
61
0
38
0
0.96
3787538--3787578
20
2.0
20
90
9
66
63
0
36
0
0.95
3787893--3787934
17
2.4
18
88
11
70
16
0
0
83
0.65
3787896--3787933
5
6.8
6
88
11
55
15
0
0
84
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3787896--3787933
11
3.5
11
86
13
60
15
0
0
84
0.63
3787950--3788169
117
1.9
117
84
5
302
44
3
11
40
1.57
3787950--3788169
59
3.8
58
84
6
250
44
3
11
40
1.57
3788226--3788272
14
3.5
13
83
11
60
2
8
4
85
0.81
3788225--3788283
27
2.2
26
82
8
66
8
6
3
81
0.97
3798620--3798654
10
3.5
10
88
0
52
88
0
11
0
0.51
3798619--3798660
22
1.9
22
90
9
68
85
0
14
0
0.59
3798619--3798658
9
4.3
9
84
15
55
87
0
12
0
0.54
3799661--3799999
83
4.0
84
80
6
346
24
13
20
41
1.88
3799661--3799998
41
8.0
43
77
5
269
24
13
19
42
1.88
3799703--3799998
127
2.3
126
83
3
371
23
13
19
42
1.87
3799918--3800012
44
2.1
44
80
5
102
29
13
15
41
1.86
3800202--3800258
23
2.7
22
86
10
75
31
5
0
63
1.17
3800219--3800276
22
2.6
22
86
5
64
31
6
1
60
1.33
3800216--3800305
25
3.8
23
80
11
92
32
5
2
60
1.32
3800302--3800387
3
27.7
3
71
19
52
26
4
2
66
1.23
3800302--3800371
20
3.5
20
86
5
88
27
5
2
64
1.30
3800339--3800383
24
1.9
23
86
4
63
24
4
2
68
1.19
3800240--3800388
55
2.8
52
73
15
117
28
4
2
64
1.27
3800375--3800405
15
2.1
15
93
0
53
9
3
0
87
0.66
3801097--3801140
22
2.0
23
86
4
63
27
0
6
65
1.17
3801201--3801244
4
12.0
4
90
4
51
27
0
2
70
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3801197--3801245
14
3.5
15
79
20
61
28
0
2
69
1.00
3801201--3801250
16
3.1
16
78
16
59
30
0
4
66
1.10
3801216--3801260
22
2.2
20
84
8
54
35
0
2
62
1.08
3801265--3801320
5
11.0
5
81
14
62
16
1
0
82
0.76
3801262--3801320
6
10.3
6
83
10
63
16
1
0
81
0.78
3801312--3801453
58
2.5
56
81
12
173
46
4
8
40
1.56
3801328--3801555
58
3.8
58
75
13
196
42
5
12
39
1.67
3806663--3806698
16
2.2
16
95
0
63
38
0
16
44
1.48
3809318--3809474
85
1.9
84
91
1
260
51
12
12
23
1.73
3811966--3811997
15
2.1
15
100
0
64
40
0
0
59
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190