genome.fa.s223.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  101  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15879888--15889165	859	10.5	884	82	6	8607	25	23	24	26	2.00
15894851--15894903	26	2.0	26	92	7	90	26	16	26	30	1.97
15895748--15895800	26	2.0	26	100	0	106	26	20	26	26	1.99
15894032--15903777	897	11.0	898	85	4	12274	25	24	24	25	2.00
15896648--15896700	26	2.0	26	96	0	97	26	22	26	24	2.00
15898382--15898434	26	2.0	26	96	0	97	26	20	24	28	1.99
15899284--15899335	25	2.0	26	92	3	88	28	21	23	26	1.99
15901962--15902014	26	2.0	26	92	0	88	28	20	22	28	1.99
15902876--15902926	26	2.0	26	92	0	84	29	17	25	27	1.98
15904458--15904510	26	2.0	26	92	0	88	28	18	24	28	1.98
15905359--15905412	26	2.1	26	92	0	90	29	20	24	25	1.99
15903722--15914443	900	11.9	896	78	8	10411	25	23	24	25	2.00
15906259--15906311	26	2.0	26	92	0	88	30	18	24	26	1.98
15908009--15908061	26	2.0	26	96	0	97	26	18	26	28	1.98
15908905--15908956	26	2.0	26	88	0	77	30	17	23	28	1.97
15909766--15909819	26	2.1	26	89	0	81	22	20	27	29	1.98
15911655--15911707	26	2.0	26	100	0	106	22	20	26	30	1.98
15912548--15912626	26	3.0	26	98	0	149	27	20	25	26	1.99
15913467--15913517	26	2.0	26	96	0	93	27	13	29	29	1.94
15914394--15918472	868	4.6	877	84	6	4959	25	23	24	26	2.00
15916853--15916905	26	2.0	26	96	0	97	26	18	26	28	1.98
15920750--15920802	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15921634--15921686	26	2.0	26	100	0	106	26	26	20	26	1.99
15919887--15923872	898	4.5	897	89	3	5522	25	24	23	25	2.00
15922532--15922581	26	1.9	26	95	0	91	22	24	22	32	1.98
15923430--15923482	26	2.0	26	92	0	88	22	22	24	30	1.99
15923527--15924212	341	2.0	341	88	3	1031	24	23	24	28	2.00
15925554--15925606	26	2.0	26	100	0	106	26	26	20	26	1.99
15927363--15927415	26	2.0	26	88	0	79	30	24	18	26	1.98
15928269--15928321	26	2.0	26	92	0	88	30	26	16	26	1.97
15924673--15928812	904	4.6	903	87	2	5729	25	24	24	25	2.00
15929600--15930001	200	2.0	197	83	3	493	25	29	19	25	1.99
15932840--15932892	26	2.0	26	96	0	97	28	26	18	26	1.98
15931957--15934538	903	2.9	900	87	3	3675	25	24	24	25	2.00
15935351--15935403	26	2.0	26	100	0	106	26	26	20	26	1.99
15934483--15936139	896	1.8	895	89	1	2620	26	24	24	25	2.00
15935377--15936849	714	2.1	711	89	1	2205	27	23	23	25	2.00
15936961--15937013	26	2.0	26	96	0	97	28	26	18	26	1.98
15937873--15937925	26	2.0	26	88	0	79	26	24	22	26	2.00
15938300--15938360	27	2.2	28	85	8	81	59	8	8	24	1.54
15939588--15939640	26	2.0	26	96	0	97	28	22	18	30	1.98
15940499--15940550	26	2.0	25	92	3	86	28	23	21	26	1.99
15941401--15941453	26	2.0	26	92	0	88	30	26	15	28	1.96
15938722--15946344	889	8.5	892	86	4	9511	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15944076--15944128	26	2.0	26	92	0	88	24	24	20	30	1.99
15944991--15945041	25	2.0	25	92	0	84	27	19	25	27	1.99
15945873--15945925	26	2.0	26	92	0	88	30	26	18	24	1.98
15947131--15947183	26	2.0	26	92	0	88	26	18	24	30	1.98
15946384--15949060	901	3.0	895	86	3	3569	25	24	24	25	2.00
15950633--15950682	26	1.9	26	91	0	82	30	18	28	24	1.97
15952446--15952498	26	2.0	26	92	0	88	28	18	24	28	1.98
15954946--15954996	26	2.0	26	92	0	84	25	17	27	29	1.98
15955177--15955202	4	6.5	4	100	0	52	0	26	73	0	0.84
15955853--15955905	26	2.0	26	88	0	79	30	22	22	24	1.99
15953734--15958020	904	4.7	890	81	8	4466	25	24	24	25	2.00
15956783--15956834	26	2.0	26	88	0	77	28	19	23	28	1.98
15958835--15958887	26	2.0	26	88	0	79	28	20	22	28	1.99
15958023--15982615	893	27.2	888	71	12	12285	25	24	24	25	2.00
15967083--15967140	30	2.1	27	84	12	73	13	36	25	24	1.92
15967874--15969902	905	2.2	904	87	2	2925	24	24	26	24	2.00
15969660--15969712	26	2.0	26	100	0	106	26	20	26	26	1.99
15970555--15971563	511	2.0	510	88	1	1520	26	21	20	31	1.98
15971655--15971707	26	2.0	26	92	0	88	24	18	28	28	1.98
15972549--15972599	26	2.0	26	92	0	84	29	19	21	29	1.98
15974330--15974382	26	2.0	26	100	0	106	26	20	26	26	1.99
15974480--15974505	12	2.2	12	100	0	52	15	42	19	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15975250--15975301	26	2.0	26	96	0	95	26	21	26	25	1.99
15971093--15982615	897	12.9	898	84	5	13996	25	24	24	25	2.00
15979668--15979720	26	2.0	26	96	0	97	28	20	24	26	1.99
15982623--15982675	26	2.0	26	96	0	97	28	20	24	26	1.99
15983518--15983570	26	2.0	26	96	0	97	28	20	24	26	1.99
15985792--15985841	26	1.9	26	91	0	82	28	20	30	22	1.98
15988418--15988470	26	2.0	26	96	0	97	26	20	24	28	1.99
15989285--15989337	26	2.0	26	88	0	79	30	18	22	28	1.98
15991353--15998157	858	7.7	866	84	6	7426	25	24	24	25	2.00
15992806--15992856	26	2.0	26	100	0	102	27	21	23	27	1.99
15993665--15993717	26	2.0	26	100	0	106	26	20	26	26	1.99
15994537--15994589	26	2.0	26	96	0	97	26	22	26	24	2.00
15996333--15996384	25	2.0	26	88	3	79	28	19	23	28	1.98
15993778--15998157	892	4.9	898	89	2	6237	25	24	24	25	2.00
15997390--15998888	713	2.1	714	89	1	2272	26	23	23	27	2.00
16000615--16000667	26	2.0	26	96	0	97	26	24	22	26	2.00
16001507--16001559	26	2.0	26	88	0	79	28	26	16	28	1.97
16000591--16009806	898	10.4	863	80	9	8416	25	24	24	25	2.00
16003238--16003287	26	2.0	26	88	4	75	22	28	22	28	1.99
16004142--16004194	26	2.0	26	92	0	88	28	24	20	26	1.99
16006860--16006912	26	2.0	26	96	0	97	28	26	18	26	1.98
16010269--16010350	26	3.2	26	94	0	146	28	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16012814--16012866	26	2.0	26	88	0	79	28	24	20	26	1.99
16010892--16033921	902	25.1	902	72	12	12994	25	24	24	25	2.00
16015440--16015492	26	2.0	26	92	0	88	26	22	20	30	1.98
16018095--16018147	26	2.0	26	92	0	88	28	28	18	24	1.98
16018985--16019037	26	2.0	26	88	0	79	30	24	18	26	1.98
16019887--16019939	26	2.0	26	96	0	97	26	24	20	28	1.99
16023272--16023324	26	2.0	26	85	0	70	30	22	18	28	1.98
16026740--16026795	26	2.2	26	90	0	85	28	23	19	28	1.98
16027640--16027692	26	2.0	26	96	0	97	26	26	18	28	1.98
16029442--16029494	26	2.0	26	96	0	97	26	24	20	28	1.99
16031246--16031298	26	2.0	26	92	0	88	26	22	20	30	1.98
16032142--16032191	26	1.9	26	87	0	73	22	24	26	28	1.99
16033038--16033090	26	2.0	26	92	0	88	28	24	18	28	1.98
16025881--16033921	900	9.0	901	86	2	10509	25	24	24	25	2.00
16034976--16040025	876	5.7	876	82	7	5648	25	23	24	26	2.00
16038633--16038685	26	2.0	26	96	0	97	28	20	24	26	1.99
16039374--16039425	26	2.0	26	96	0	95	26	17	26	28	1.97
16039929--16040113	88	2.1	88	93	0	316	33	20	17	29	1.95
16040353--16040432	26	3.1	26	96	0	142	27	20	26	26	1.99
16040418--16040716	159	1.9	159	80	2	359	20	31	29	18	1.96
16040922--16040974	26	2.0	26	92	0	88	30	16	24	28	1.97
16042731--16042778	25	1.9	25	100	0	96	25	20	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16043791--16043841	26	2.0	26	88	0	75	31	17	25	25	1.97
16044658--16044710	26	2.0	26	100	0	106	26	20	26	26	1.99
16043041--16047139	892	4.6	873	85	5	5043	25	23	24	26	2.00
16045550--16045602	26	2.0	26	92	0	88	26	20	22	30	1.98
16048047--16048102	26	2.2	26	86	0	76	32	19	19	28	1.97
16048953--16049003	26	2.0	26	92	0	84	29	17	23	29	1.97
16049842--16049894	26	2.0	26	92	0	88	28	18	24	28	1.98
16050727--16050779	26	2.0	26	89	7	81	28	16	24	30	1.97
16051632--16051682	26	2.0	26	88	0	75	31	15	21	31	1.95
16052542--16052594	26	2.0	26	96	0	97	26	20	24	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190