genome.fa.s223.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  111  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17298240--17298315	40	1.9	40	100	0	152	34	17	14	34	1.90
17297371--17300933	903	3.9	922	84	5	4077	25	24	24	25	2.00
17299669--17299721	26	2.0	26	96	0	97	28	26	18	26	1.98
17302489--17302541	26	2.0	26	92	0	88	26	18	28	26	1.98
17303939--17303991	26	2.0	26	92	0	88	26	16	28	28	1.97
17305444--17305613	84	2.0	84	93	0	286	27	14	30	27	1.95
17305807--17305859	26	2.0	26	88	0	79	30	16	24	28	1.97
17306725--17307098	164	2.3	159	88	2	541	23	28	27	20	1.99
17307934--17309667	585	3.0	585	93	0	3023	27	20	23	29	1.99
17310713--17310765	26	2.0	26	92	0	88	28	18	24	28	1.98
17311619--17311671	26	2.0	26	85	7	72	26	16	30	26	1.97
17309100--17326440	904	19.4	901	85	4	21143	25	23	24	26	2.00
17316095--17316144	26	1.9	26	95	0	91	28	22	28	22	1.99
17316987--17317039	26	2.0	26	89	7	81	28	16	24	30	1.97
17318768--17318820	26	2.0	26	92	0	88	30	16	22	30	1.96
17321460--17321512	26	2.0	26	88	0	79	28	15	28	28	1.96
17322358--17322408	26	2.0	26	92	7	86	29	15	27	27	1.96
17324146--17324198	26	2.0	26	92	0	88	26	16	28	28	1.97
17325902--17325961	26	2.4	26	88	5	88	23	21	25	30	1.99
17326691--17326743	26	2.0	26	96	0	97	28	20	24	26	1.99
17328344--17328396	26	2.0	26	96	0	97	24	26	22	26	2.00
17330085--17330137	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17331857--17331908	26	2.0	26	100	0	104	26	26	19	26	1.99
17333746--17333798	26	2.0	26	92	0	88	28	24	20	26	1.99
17334645--17334697	26	2.0	26	96	0	97	28	22	18	30	1.98
17335121--17335179	26	2.2	27	81	6	66	59	10	8	22	1.56
17335540--17335592	26	2.0	26	100	0	106	26	26	20	26	1.99
17336439--17336491	26	2.0	26	88	0	79	33	22	15	28	1.94
17333047--17338675	894	6.3	894	85	3	7244	25	24	23	25	2.00
17338799--17338851	26	2.0	26	85	0	70	30	24	18	26	1.98
17339667--17339717	26	2.0	26	96	0	93	25	25	19	29	1.99
17341203--17341278	26	2.9	26	96	0	134	23	30	18	27	1.98
17343033--17343085	26	2.0	26	96	0	97	28	24	20	26	1.99
17339832--17347981	883	9.0	898	83	6	9563	25	25	24	25	2.00
17344049--17344074	11	2.4	11	100	0	52	26	38	23	11	1.89
17346617--17346667	26	2.0	26	84	0	66	23	27	15	33	1.95
17347518--17347569	26	2.0	25	92	3	86	26	25	19	28	1.98
17349685--17349735	26	2.0	26	88	0	75	23	17	25	33	1.96
17347979--17351418	899	3.9	896	86	3	4434	25	23	24	26	2.00
17351312--17351532	116	1.9	118	82	7	281	16	43	22	17	1.87
17351605--17351657	26	2.0	26	85	7	72	28	18	24	28	1.98
17353536--17353588	26	2.0	26	88	0	79	24	22	26	26	2.00
17354427--17354479	26	2.0	26	88	0	79	26	18	24	30	1.98
17354453--17354807	159	2.2	158	83	1	415	22	28	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17356392--17356444	26	2.0	26	96	0	97	26	20	24	28	1.99
17357301--17357353	26	2.0	26	96	0	97	26	22	24	26	2.00
17358209--17358261	26	2.0	26	96	0	97	26	22	26	24	2.00
17354611--17361049	908	7.2	901	84	5	8015	25	24	24	25	2.00
17360811--17360863	26	2.0	26	96	0	97	26	18	26	28	1.98
17361430--17361482	26	2.0	26	88	0	79	30	18	24	26	1.98
17362173--17362221	26	1.9	26	95	4	91	30	20	24	24	1.98
17363966--17364018	26	2.0	26	92	0	88	26	18	26	28	1.98
17361456--17364942	888	3.9	888	85	5	4503	25	23	24	26	2.00
17364859--17364911	26	2.0	26	92	0	88	28	20	24	26	1.99
17365563--17365613	26	2.0	26	100	0	102	27	15	29	27	1.96
17367023--17367050	12	2.3	12	100	0	56	14	67	17	0	1.22
17368096--17368147	26	2.0	26	92	7	88	26	26	19	26	1.99
17366346--17369803	900	3.9	892	85	6	4434	25	24	23	25	2.00
17368987--17369039	26	2.0	26	100	0	106	26	26	20	26	1.99
17369125--17370525	725	1.9	726	86	3	1978	27	24	22	25	2.00
17370603--17370654	26	2.0	26	100	0	104	26	26	19	26	1.99
17371494--17371546	26	2.0	26	96	0	97	28	26	18	26	1.98
17373240--17373292	26	2.0	26	96	0	97	28	26	20	24	1.99
17376048--17376125	26	3.0	26	96	1	140	28	24	20	26	1.99
17377868--17377920	26	2.0	26	96	0	97	30	26	15	28	1.96
17378768--17378846	26	3.0	25	85	7	104	26	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17377875--17379718	925	2.0	925	89	2	2866	26	25	23	25	2.00
17380573--17380625	26	2.0	26	96	0	97	28	24	20	26	1.99
17379692--17381354	898	1.8	898	88	2	2519	25	25	23	25	2.00
17381421--17381445	11	2.3	11	100	0	50	16	28	40	16	1.89
17380599--17382753	710	3.1	705	83	7	2698	26	23	23	26	2.00
17383575--17383599	12	2.1	12	100	0	50	0	64	28	8	1.22
17383779--17383829	26	2.0	26	100	0	102	27	23	21	27	1.99
17382009--17386802	886	5.4	889	86	3	6139	25	24	24	25	2.00
17386443--17386495	26	2.0	26	89	7	81	28	22	18	30	1.98
17387268--17387320	26	2.0	26	88	0	79	30	26	18	24	1.98
17388192--17388242	26	2.0	26	96	0	93	29	25	17	27	1.98
17389080--17389135	26	2.2	26	93	0	94	28	21	19	30	1.98
17386800--17394531	893	8.6	894	84	5	9595	25	24	24	25	2.00
17390854--17390904	26	2.0	26	96	0	93	29	25	17	27	1.98
17391743--17391796	25	2.1	27	89	6	85	29	18	16	35	1.93
17389977--17394535	891	5.1	893	84	6	5548	25	24	24	25	2.00
17394439--17394491	26	2.0	26	85	0	70	30	22	20	26	1.98
17396123--17396174	25	2.0	26	88	3	79	25	21	26	26	1.99
17395249--17397408	901	2.4	894	89	2	3185	25	24	24	25	2.00
17406100--17406151	22	2.4	22	86	0	77	50	11	9	28	1.70
17406770--17406835	26	2.5	26	82	4	80	4	9	4	81	0.96
17432930--17432965	18	2.0	18	100	0	72	66	0	27	5	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17433550--17433799	124	2.0	124	96	0	464	36	14	8	40	1.77
17435057--17435102	23	2.0	23	91	0	74	28	8	21	41	1.83
17435067--17435116	23	2.2	23	85	7	66	38	2	16	44	1.59
17438307--17438390	33	2.5	34	80	3	98	33	9	17	39	1.82
17438300--17438417	34	3.5	33	77	4	103	31	10	17	40	1.83
17446388--17447145	187	4.1	186	85	4	832	35	12	9	41	1.77
17446418--17447135	373	1.9	372	82	3	881	35	13	9	41	1.76
17455243--17455280	19	2.0	19	85	10	51	36	0	2	60	1.11
17455366--17455421	23	2.6	22	83	11	71	53	1	0	44	1.11
17455538--17455571	8	4.1	8	88	7	50	85	0	14	0	0.60
17455538--17455571	17	2.0	17	94	0	59	85	0	14	0	0.60
17463985--17464027	18	2.4	18	96	0	77	27	2	46	23	1.64
17466944--17466984	21	2.0	21	95	0	73	43	21	7	26	1.79
17473942--17474054	34	3.3	34	77	2	120	38	11	12	37	1.79
17474762--17474814	25	2.1	26	85	3	72	43	1	0	54	1.11
17474730--17474814	26	3.1	26	73	11	73	40	5	0	54	1.25
17474828--17474919	34	2.7	34	81	6	114	33	10	16	39	1.83
17474872--17474938	34	2.0	34	84	0	89	35	8	17	37	1.82
17479019--17479083	18	3.3	18	75	19	58	55	13	7	23	1.64
17479039--17479161	24	5.2	25	76	14	95	49	16	6	27	1.70
17479238--17479301	24	2.7	23	88	9	94	53	10	1	34	1.46
17479483--17479543	31	1.9	32	87	9	90	81	8	3	6	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17479485--17479549	18	3.5	19	77	8	62	80	9	4	6	1.03
17480641--17480737	6	16.7	6	77	7	85	63	8	1	26	1.29
17480668--17480736	23	3.0	23	87	6	86	66	7	1	24	1.25
17480977--17481115	43	3.2	43	83	0	152	41	16	12	29	1.86
17481124--17481162	19	2.1	19	100	0	78	30	5	20	43	1.73
17481157--17481261	43	2.5	43	83	7	135	40	16	14	28	1.87
17487823--17487856	14	2.4	14	90	9	52	52	14	5	26	1.64
17487839--17487924	24	3.6	24	79	0	100	51	15	5	27	1.66
17487935--17488048	20	5.5	21	76	17	96	53	9	5	31	1.56
17488144--17488185	19	2.1	21	86	8	61	73	0	7	19	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190