genome.fa.s223.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  62  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10250995--10251043	7	7.4	7	82	15	52	16	0	10	73	1.09
10252798--10252856	17	3.6	17	68	15	52	59	0	0	40	0.97
10252798--10252873	31	2.4	31	91	2	116	60	1	0	38	1.05
10261177--10261214	19	1.9	19	89	5	58	65	2	5	26	1.27
10274429--10274644	50	4.4	49	79	8	206	34	8	15	40	1.79
10274429--10274615	99	1.9	99	84	2	250	34	8	14	42	1.76
10274429--10274644	99	2.2	99	82	5	249	34	8	15	40	1.79
10274640--10274784	46	3.1	46	78	3	148	30	8	14	46	1.74
10274826--10274869	15	2.8	16	83	10	56	79	9	0	11	0.93
10274826--10274870	17	2.6	16	83	13	54	80	8	0	11	0.92
10277623--10277661	6	6.5	6	91	8	62	79	0	0	20	0.73
10279669--10279721	16	3.2	16	81	7	54	62	1	1	33	1.17
10279934--10279969	18	2.1	18	89	5	56	38	5	0	55	1.23
10279941--10279995	19	2.8	19	83	2	56	41	1	1	54	1.21
10279941--10279996	20	2.9	19	84	7	60	41	1	1	55	1.21
10279963--10280014	20	2.6	19	82	8	59	34	0	3	61	1.14
10280027--10280085	27	2.2	27	81	6	66	20	6	1	71	1.18
10280137--10280205	30	2.3	30	85	5	86	37	0	2	59	1.12
10280165--10280191	12	2.2	12	100	0	54	29	0	0	70	0.88
10280072--10280180	9	11.7	9	72	10	67	36	0	2	59	1.18
10280168--10280211	19	2.2	20	84	8	54	34	0	4	61	1.16
10280616--10280666	19	2.5	21	84	12	63	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10280632--10280680	14	3.6	14	77	5	55	61	0	0	38	0.96
10280668--10280714	17	2.8	17	77	9	51	51	0	0	48	1.00
10280943--10280968	3	8.7	3	100	0	52	65	0	0	34	0.93
10282894--10283134	59	4.0	60	84	4	317	35	12	7	44	1.70
10282894--10283115	121	1.8	121	89	3	349	35	13	6	44	1.70
10283169--10283230	6	10.8	6	77	10	58	77	0	6	16	0.97
10283150--10283211	26	2.3	28	86	5	83	79	0	6	14	0.93
10283140--10283230	17	5.4	17	74	17	73	75	0	7	16	1.02
10283140--10283227	28	3.1	28	76	22	87	76	0	7	15	1.01
10284105--10284208	32	3.4	29	76	14	86	64	2	8	24	1.36
10284105--10284181	31	2.5	30	80	12	86	64	2	9	23	1.35
10284144--10284214	32	2.2	31	83	11	90	67	1	7	23	1.23
10284105--10284213	31	3.5	29	77	12	83	65	2	8	23	1.34
10284200--10284260	6	9.8	6	81	15	63	75	0	0	24	0.80
10284206--10284260	17	3.3	17	87	10	78	74	0	0	25	0.82
10284198--10284277	23	3.4	22	83	13	88	71	1	0	27	0.94
10284186--10284377	8	25.4	8	72	15	58	64	3	1	30	1.17
10284242--10284290	15	3.2	15	78	21	57	61	4	0	34	1.15
10284297--10284329	4	8.5	4	86	6	50	72	0	0	27	0.85
10284412--10284452	20	2.0	21	90	4	66	19	24	29	26	1.98
10286515--10286565	22	2.3	22	83	10	68	35	13	7	43	1.73
10289354--10289422	24	2.9	24	80	8	79	49	1	1	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10289401--10289462	17	3.5	17	75	18	54	54	3	1	40	1.26
10289579--10289636	23	2.4	25	81	16	70	48	5	1	44	1.35
10289762--10289838	33	2.3	34	84	13	97	55	2	2	38	1.27
10289762--10289841	18	4.8	16	70	21	56	56	2	2	38	1.26
10289937--10289974	19	1.9	19	89	5	58	34	2	0	63	1.09
10289938--10289979	19	2.2	19	83	8	50	33	4	0	61	1.17
10296197--10296234	20	1.9	19	94	5	67	47	0	0	52	1.00
10298244--10298293	24	2.3	21	78	18	57	60	16	10	14	1.59
10298375--10298424	23	2.2	22	85	3	64	60	10	10	20	1.57
10298710--10298753	21	2.1	21	86	0	61	54	13	11	20	1.69
10300044--10300114	31	2.3	30	74	11	72	38	36	1	23	1.64
10302327--10302393	14	4.5	15	76	10	57	16	0	37	46	1.47
10302421--10302550	28	4.5	29	80	9	99	16	1	33	49	1.55
10302460--10302534	28	2.7	28	91	0	123	14	2	33	49	1.58
10303004--10303063	14	4.2	13	73	24	50	73	3	0	23	0.98
10305808--10305841	8	4.0	9	88	11	54	91	0	8	0	0.43
10305808--10305841	17	2.1	16	94	5	59	91	0	8	0	0.43
10306179--10306205	14	1.9	14	100	0	54	37	22	37	3	1.72
10307363--10307423	29	2.1	29	88	8	90	22	6	9	60	1.51
10307357--10307423	28	2.4	28	85	7	91	20	7	8	62	1.49
10307436--10307487	23	2.2	24	80	6	63	30	5	7	55	1.52
10307474--10307502	14	2.1	14	93	6	51	24	6	13	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10307560--10307605	12	3.6	12	78	16	56	30	6	10	52	1.62
10307550--10307622	27	2.5	30	78	15	98	36	5	8	49	1.56
10307555--10307614	27	2.3	26	91	2	102	36	6	8	48	1.60
10312862--10313009	44	3.5	42	77	6	136	33	9	12	44	1.74
10313257--10313294	3	12.3	3	88	5	58	28	5	0	65	1.14
10314867--10314905	19	2.1	19	85	0	51	10	10	10	69	1.38
10314899--10314963	33	2.0	33	85	11	89	20	4	6	69	1.28
10314897--10314982	35	2.6	32	80	10	84	19	4	5	69	1.27
10315029--10315057	14	2.1	14	93	6	51	24	6	13	55	1.63
10315157--10315213	24	2.4	24	81	0	69	21	7	19	52	1.69
10317299--10317339	17	2.4	17	83	0	55	9	9	4	75	1.17
10323468--10323520	27	2.0	27	84	0	70	62	5	22	9	1.47
10324986--10325040	27	2.0	27	82	0	65	34	16	14	34	1.89
10325718--10325748	15	2.1	15	93	0	53	48	3	19	29	1.64
10326178--10326282	26	4.0	25	68	16	79	35	16	20	27	1.94
10329695--10329726	2	16.0	2	100	0	64	50	0	0	50	1.00
10333366--10333425	17	3.5	17	83	2	75	43	35	5	16	1.70
10333366--10333445	34	2.3	35	87	8	110	43	33	5	17	1.71
10333366--10333447	17	4.8	16	78	4	65	43	32	4	18	1.71
10333915--10333959	18	2.5	18	81	0	54	48	24	4	22	1.68
10334228--10334330	52	2.0	52	80	3	118	46	8	18	26	1.78
10339944--10340020	29	2.6	28	78	8	82	57	1	2	38	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10340694--10340779	29	2.9	30	77	5	86	39	6	2	51	1.42
10347367--10347408	17	2.5	17	80	7	50	78	7	7	7	1.09
10347158--10347601	231	2.0	227	85	5	603	63	8	13	14	1.52
10347547--10347620	35	2.1	35	80	9	80	67	16	6	9	1.39
10361385--10361435	15	3.4	15	79	17	52	80	11	3	3	0.98
10361433--10361458	7	3.7	7	100	0	52	76	0	0	23	0.78
10362373--10362581	101	2.1	101	89	1	321	35	13	11	38	1.82
10362381--10362583	51	4.0	51	83	4	259	36	13	11	37	1.82
10362565--10362644	30	2.6	30	80	7	90	32	16	17	33	1.92
10362565--10362656	30	3.0	29	80	10	87	33	14	16	35	1.88
10362565--10362656	32	3.0	30	80	4	87	33	14	16	35	1.88
10365501--10365555	25	2.2	25	80	9	58	38	7	7	47	1.59
10365616--10365662	21	2.2	21	84	3	58	76	10	2	10	1.10
10366146--10366312	39	4.2	39	79	8	169	47	16	13	22	1.81
10366161--10366313	40	3.8	40	83	4	184	47	16	13	22	1.81
10366777--10366856	31	2.5	32	89	4	117	38	16	8	36	1.79
10366850--10367110	21	11.5	21	71	16	155	37	15	8	38	1.79
10366850--10367133	46	6.2	46	88	1	399	37	15	9	38	1.79
10366846--10367133	138	2.1	138	89	0	441	38	15	9	37	1.79
10367960--10368013	5	10.8	5	77	16	51	1	20	0	77	0.86
10367929--10368014	9	8.8	9	71	16	64	4	18	0	76	0.95
10372186--10372215	8	3.9	8	95	4	53	13	0	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10378253--10378279	7	3.9	7	100	0	54	29	0	25	44	1.54
10380998--10381193	98	2.0	98	95	0	356	28	23	20	28	1.99
10381991--10382047	14	3.8	14	76	17	60	63	1	0	35	1.05
10382003--10382044	6	6.7	6	84	10	57	66	2	0	30	1.04
10382086--10382110	8	3.1	8	100	0	50	40	12	0	48	1.40
10385077--10385127	18	2.8	19	85	5	61	31	3	27	37	1.75
10385473--10385504	6	5.3	6	92	0	55	31	50	0	18	1.48
10385497--10385568	30	2.4	30	100	0	144	33	29	5	31	1.80
10389173--10389218	20	2.2	20	85	11	58	60	4	6	28	1.40
10391089--10391130	22	2.0	21	81	13	50	57	2	0	40	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190