genome.fa.s223.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  190  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33116073--33116327	44	5.8	44	80	9	254	23	13	18	44	1.85
33116552--33116629	20	4.0	20	76	12	72	32	2	0	65	1.06
33116543--33116633	20	4.7	19	73	18	64	31	2	0	65	1.04
33116900--33116933	9	3.7	9	84	7	50	14	0	14	70	1.17
33117393--33117429	6	6.5	6	93	6	60	16	0	0	83	0.64
33117438--33117848	57	7.1	58	82	4	413	44	5	9	39	1.61
33117613--33117646	15	2.4	14	90	5	50	50	0	0	50	1.00
33127969--33128222	136	1.9	136	82	4	325	34	18	21	25	1.96
33131490--33131523	16	2.3	15	90	10	52	17	17	29	35	1.93
33131946--33131982	16	2.4	16	82	8	51	35	0	0	64	0.94
33132812--33132842	14	2.2	14	94	0	53	48	12	0	38	1.42
33132993--33133030	20	1.9	20	94	0	67	39	7	18	34	1.80
33133108--33133168	29	2.2	27	85	5	77	52	3	0	44	1.17
33133509--33133533	7	3.6	7	100	0	50	16	0	0	84	0.63
33133970--33134008	19	2.1	19	100	0	78	25	30	15	28	1.96
33135411--33135457	22	2.1	22	92	0	76	27	14	14	42	1.86
33135704--33135750	23	2.0	25	84	16	64	68	0	0	31	0.90
33135711--33135752	18	2.4	18	88	4	59	69	0	0	30	0.89
33137706--33138370	343	1.9	340	88	3	1005	37	20	14	28	1.91
33147135--33147183	19	2.6	18	71	9	53	24	30	20	24	1.98
33147806--33147847	18	2.4	18	88	4	59	66	0	2	30	1.04
33148428--33148460	16	2.2	16	89	10	52	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33149807--33150447	333	1.9	336	86	5	916	38	19	14	28	1.91
33152549--33152579	10	3.1	10	100	0	62	58	19	0	22	1.40
33152590--33152750	80	2.0	80	100	0	322	33	17	23	25	1.96
33152739--33152857	60	2.0	60	96	0	220	23	27	5	43	1.74
33152880--33152904	2	12.5	2	100	0	50	52	0	0	48	1.00
33153105--33153150	18	2.3	20	85	14	60	58	0	0	41	0.98
33155662--33155686	12	2.1	12	100	0	50	44	0	8	48	1.32
33155651--33155702	27	1.9	27	81	14	63	44	0	3	51	1.19
33156984--33157072	42	2.1	42	85	0	115	30	6	32	30	1.83
33158492--33158535	23	1.9	23	100	0	88	22	22	9	45	1.80
33165283--33165338	29	1.9	29	89	7	87	19	16	41	23	1.90
33166041--33166094	20	2.8	18	78	21	65	46	0	0	53	1.00
33166041--33166091	21	2.5	20	85	14	70	45	0	0	54	0.99
33166033--33166092	22	2.6	23	75	25	63	45	0	0	55	0.99
33166822--33166850	2	14.5	2	100	0	58	51	0	0	48	1.00
33168352--33168389	6	6.2	6	85	14	51	31	0	0	68	0.90
33170854--33170885	3	10.7	3	93	0	55	34	0	31	34	1.58
33170938--33171037	30	3.2	30	68	18	78	45	6	31	18	1.73
33170938--33171068	63	2.1	63	85	0	172	44	5	33	16	1.71
33185924--33185953	2	15.5	2	93	6	53	50	0	0	50	1.00
33186078--33186137	27	2.2	27	90	0	93	41	0	8	50	1.33
33186433--33186463	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33187167--33187200	15	2.1	17	89	10	54	50	0	0	50	1.00
33187870--33187904	18	2.0	17	88	5	52	17	5	0	77	0.96
33188214--33188241	3	9.3	3	100	0	56	32	0	0	67	0.91
33191919--33191952	2	17.0	2	93	0	59	47	2	0	50	1.16
33192069--33192110	20	2.1	20	100	0	84	23	16	9	50	1.75
33193098--33193132	2	17.5	2	100	0	70	51	0	0	48	1.00
33198172--33198236	25	2.6	25	77	15	80	47	1	4	46	1.32
33198805--33198852	18	2.7	18	80	0	60	56	0	2	41	1.11
33200241--33200286	18	2.7	18	78	18	53	39	0	0	60	0.97
33205415--33205444	14	2.1	14	93	0	51	23	0	0	76	0.78
33205488--33205531	16	2.6	17	85	10	63	63	0	0	36	0.95
33205488--33205529	17	2.4	17	88	4	57	66	0	0	33	0.92
33206817--33206862	21	2.1	22	88	4	67	58	0	0	41	0.98
33206814--33206864	22	2.3	22	83	6	68	58	0	0	41	0.98
33217785--33217823	15	2.4	17	79	16	55	43	0	0	56	0.99
33217803--33217844	23	1.9	23	85	9	61	35	0	2	61	1.09
33217937--33217973	18	2.1	18	95	5	67	51	0	5	43	1.24
33221822--33221855	2	17.5	2	93	6	61	50	0	0	50	1.00
33221964--33222039	27	2.8	27	84	4	109	42	0	6	51	1.28
33222335--33222371	2	18.5	2	100	0	74	48	0	0	51	1.00
33223309--33223334	2	13.0	2	100	0	52	0	0	50	50	1.00
33223334--33223372	2	19.5	2	100	0	78	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33227837--33227888	2	26.0	2	92	0	86	46	3	0	50	1.20
33229685--33229709	2	12.5	2	100	0	50	52	0	0	48	1.00
33234754--33234815	25	2.5	26	82	12	76	45	0	4	50	1.23
33235398--33235445	18	2.7	18	80	0	60	56	2	0	41	1.11
33236824--33236869	18	2.7	18	78	18	53	39	0	0	60	0.97
33241993--33242022	14	2.1	14	93	0	51	23	0	0	76	0.78
33243396--33243441	21	2.1	22	88	4	67	58	0	0	41	0.98
33249248--33249330	18	4.3	19	71	24	59	62	0	0	37	0.95
33249218--33249299	37	2.2	37	88	0	119	62	2	2	32	1.22
33249251--33249320	23	3.1	24	73	13	60	60	0	0	40	0.97
33249378--33249403	13	2.0	13	100	0	52	69	0	0	30	0.89
33250009--33250055	17	2.7	17	86	3	58	53	2	6	38	1.39
33258025--33258067	2	21.5	2	90	0	68	46	48	4	0	1.22
33259974--33259999	2	13.0	2	100	0	52	0	50	0	50	1.00
33262264--33262302	16	2.4	16	82	0	51	35	0	0	64	0.94
33262257--33262305	12	3.8	13	79	20	50	36	0	0	63	0.95
33262271--33262306	18	2.1	17	89	5	54	36	0	0	63	0.94
33266072--33266117	21	2.1	22	88	4	67	41	0	0	58	0.98
33267399--33267442	17	2.6	17	89	7	63	36	0	0	63	0.95
33267399--33267433	16	2.1	17	94	5	63	37	0	0	62	0.95
33272639--33272684	18	2.7	18	78	18	53	60	0	0	39	0.97
33273396--33273430	12	2.7	13	83	16	54	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33273832--33273875	21	2.1	21	83	8	54	56	4	2	36	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190

The End!