genome.fa.s223.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  176  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29332043--29332144	41	2.7	35	74	20	91	52	0	0	46	1.07
29332064--29332132	31	2.2	31	84	0	84	47	0	1	50	1.09
29332100--29332150	13	4.1	12	82	7	66	50	0	0	49	1.00
29332104--29332159	25	2.2	24	81	12	60	57	0	0	42	0.99
29332214--29332257	18	2.5	17	85	7	61	34	0	0	65	0.93
29332214--29332257	23	1.9	23	81	9	54	34	0	0	65	0.93
29332574--29332598	6	4.2	6	100	0	50	68	0	32	0	0.90
29336759--29336787	2	14.5	2	100	0	58	48	0	0	51	1.00
29337253--29337301	22	2.2	23	96	3	91	24	12	18	44	1.84
29340558--29340585	2	14.0	2	100	0	56	50	0	0	50	1.00
29342306--29342358	25	2.2	24	83	10	63	56	5	0	37	1.23
29344556--29344603	2	25.0	2	85	8	55	41	0	2	56	1.11
29344556--29344617	32	1.9	32	100	0	124	37	0	3	59	1.13
29344547--29344604	28	2.0	29	90	3	91	37	0	5	56	1.21
29345371--29345401	2	15.5	2	100	0	62	48	0	0	51	1.00
29345806--29345833	2	14.0	2	100	0	56	50	0	0	50	1.00
29345833--29345867	2	17.5	2	93	0	61	54	0	45	0	0.99
29348624--29348751	64	2.0	64	87	3	186	28	27	14	29	1.95
29355006--29355068	28	2.3	27	81	10	74	50	4	7	36	1.53
29355045--29355082	18	2.1	18	90	0	58	52	0	7	39	1.31
29355222--29355275	21	2.3	24	75	21	60	61	3	3	31	1.31
29357773--29357805	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29368709--29368738	10	3.0	10	95	0	51	0	43	0	56	0.99
29368738--29368762	2	12.5	2	100	0	50	48	0	0	52	1.00
29368968--29369008	22	1.9	21	90	5	64	56	2	2	39	1.26
29370921--29370989	21	3.5	20	76	11	70	53	0	5	40	1.25
29370936--29370981	18	2.6	18	89	0	65	56	0	4	39	1.19
29370943--29371002	21	3.0	19	81	15	68	60	0	3	36	1.14
29381641--29381671	2	15.5	2	100	0	62	51	0	0	48	1.00
29390768--29390801	9	3.8	9	84	0	50	52	0	41	5	1.25
29390765--29390807	18	2.4	18	96	0	77	53	0	41	4	1.21
29403331--29403454	63	2.0	63	91	0	203	41	14	18	25	1.89
29406562--29406592	15	2.1	15	93	0	53	51	0	0	48	1.00
29406692--29406724	17	2.1	16	88	11	50	48	0	0	51	1.00
29406832--29406880	7	6.7	7	84	13	55	24	4	0	71	1.03
29406832--29406873	23	1.9	23	85	9	61	23	4	0	71	1.05
29413814--29413860	20	2.5	20	83	13	55	34	0	4	61	1.15
29435254--29435279	13	2.0	13	100	0	52	30	7	0	61	1.24
29438855--29438905	22	2.4	22	93	3	86	29	0	17	52	1.45
29439326--29439455	15	8.7	15	77	0	116	10	56	10	23	1.63
29439313--29439407	45	2.1	45	82	3	111	10	56	10	22	1.63
29439326--29439454	45	2.9	45	83	0	132	10	55	10	24	1.63
29444638--29444662	1	25.0	1	100	0	50	0	0	0	100	0.00
29449161--29449185	5	5.0	5	100	0	50	40	20	40	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29451604--29451637	11	3.1	11	91	0	50	70	2	2	23	1.15
29451907--29451935	4	7.5	4	92	7	51	51	0	0	48	1.00
29453971--29454025	28	2.0	28	96	0	101	38	5	10	45	1.63
29454578--29454603	11	2.4	11	100	0	52	26	0	7	65	1.20
29454610--29454718	23	4.5	23	74	12	67	55	5	1	36	1.34
29456189--29456246	29	2.0	29	83	6	73	39	0	0	60	0.97
29456877--29456936	27	2.3	28	86	11	83	43	0	3	53	1.17
29457795--29457833	19	2.0	19	85	5	51	48	5	0	46	1.24
29460278--29460390	55	2.1	55	94	0	199	14	14	18	53	1.73
29460295--29460386	27	3.2	29	70	21	95	15	11	19	53	1.72
29470427--29470540	57	2.0	57	92	0	192	35	15	21	28	1.94
29474522--29474568	20	2.4	19	74	16	51	53	0	0	46	1.00
29479782--29479810	2	14.5	2	100	0	58	51	0	0	48	1.00
29481382--29481424	2	21.5	2	82	0	50	41	2	2	53	1.26
29488851--29488875	12	2.1	12	100	0	50	48	0	0	52	1.00
29495718--29495762	21	2.1	21	88	8	65	66	0	0	33	0.92
29496017--29496055	12	3.0	13	81	11	53	33	0	2	64	1.08
29504826--29505574	357	2.1	358	84	2	959	38	14	10	36	1.81
29513592--29513644	21	2.6	21	72	3	54	39	13	28	18	1.88
29516001--29516311	156	2.0	155	98	0	604	25	12	19	42	1.86
29519840--29519895	28	2.0	28	89	0	85	41	14	7	37	1.73
29522523--29522555	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29527279--29527305	8	3.4	8	100	0	54	22	0	0	77	0.76
29539052--29539107	28	2.0	28	89	0	85	41	14	7	37	1.73
29541734--29541760	3	9.0	3	100	0	54	66	0	0	33	0.92
29547235--29547285	21	2.5	20	76	20	52	45	7	0	47	1.32
29558095--29558158	34	1.9	34	83	3	85	50	3	3	43	1.33
29560882--29560914	5	7.0	5	86	13	52	63	0	0	36	0.95
29560871--29560910	13	3.1	13	88	0	62	62	0	2	35	1.09
29560882--29560957	23	3.3	23	77	3	82	59	0	0	40	0.98
29560878--29560962	45	1.9	44	85	2	116	56	0	0	43	0.99
29560896--29560964	25	3.0	23	69	24	56	55	0	0	44	0.99
29564367--29564401	18	1.9	18	88	11	54	74	2	8	14	1.17
29566197--29566268	36	2.0	36	97	0	135	43	5	2	48	1.40
29566548--29566590	23	1.9	22	90	4	68	23	0	4	72	1.04
29573988--29574027	10	4.0	10	90	9	64	57	0	0	42	0.98
29572955--29574745	626	2.9	613	81	9	1997	38	11	7	42	1.71
29574593--29574619	10	2.7	10	100	0	54	48	0	0	51	1.00
29576850--29576877	13	2.2	13	100	0	56	35	21	28	14	1.92
29579538--29579566	14	2.1	14	100	0	58	34	37	13	13	1.85
29584207--29584245	2	19.5	2	100	0	78	48	0	0	51	1.00
29584952--29584990	19	2.1	19	85	0	51	33	2	2	61	1.23
29586983--29587024	17	2.5	17	88	0	57	23	23	4	47	1.70
29590241--29590271	16	1.9	16	93	0	53	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29590475--29590509	14	2.3	16	90	9	56	74	0	8	17	1.06
29593903--29593955	23	2.3	22	75	15	54	47	5	0	47	1.26
29594754--29594801	18	2.6	18	81	12	62	37	2	0	60	1.09
29600206--29600255	3	16.3	3	81	4	55	30	4	2	64	1.23
29604309--29604342	15	2.3	15	90	5	52	52	0	0	47	1.00
29607423--29607533	56	2.0	56	89	0	168	35	8	19	36	1.82
29607979--29608024	21	2.1	23	88	8	69	43	2	2	52	1.25
29610333--29610431	48	2.1	48	88	0	144	43	7	20	29	1.78
29610858--29611133	142	1.9	142	81	1	329	27	10	21	41	1.84
29614784--29614860	42	2.0	42	85	12	110	31	2	11	54	1.50
29614874--29614935	23	2.6	23	84	7	70	50	8	6	35	1.58
29614885--29614935	26	2.1	23	85	10	66	50	9	5	33	1.59
29614893--29614955	26	2.4	27	79	12	69	58	7	3	30	1.42
29614925--29614970	19	2.4	19	82	10	58	65	8	0	26	1.21
29614925--29614985	18	3.2	20	77	13	67	65	8	0	26	1.20
29628541--29628597	26	2.2	26	90	0	87	31	8	3	56	1.47
29630721--29630768	24	2.0	24	84	8	62	43	10	8	37	1.69
29632212--29632244	17	1.9	17	88	11	50	15	9	0	75	1.03
29632313--29632353	20	2.0	22	85	9	59	65	2	2	29	1.18
29632976--29633020	24	1.9	23	86	4	63	42	2	0	55	1.12
29633194--29633273	30	2.7	30	92	1	135	56	1	0	42	1.07
29633797--29633884	44	2.0	44	97	0	167	56	10	4	28	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29634075--29634103	11	2.6	11	100	0	58	62	6	0	31	1.22
29636925--29636997	36	2.1	36	92	2	121	39	1	9	49	1.44
29637620--29637652	15	2.2	15	89	10	50	51	0	0	48	1.00
29639305--29639607	100	3.0	100	91	0	471	32	15	28	23	1.95
29643250--29643284	6	5.8	6	100	0	70	48	0	51	0	1.00
29647579--29647608	16	1.9	15	93	6	51	93	0	6	0	0.35
29647578--29647609	17	1.9	16	93	6	55	93	0	6	0	0.34
29652713--29652754	23	1.9	22	85	9	59	54	9	9	26	1.63
29653126--29653172	22	2.1	22	84	7	60	2	21	8	68	1.27
29654423--29654463	21	2.0	21	100	0	82	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190