genome.fa.s223.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  65  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10818409--10818446	19	2.0	19	90	10	60	26	5	0	68	1.11
10820075--10820126	21	2.4	22	83	6	70	17	1	30	50	1.57
10822060--10822113	27	2.0	28	85	3	74	48	1	1	48	1.23
10823991--10824028	2	19.0	2	100	0	76	50	0	0	50	1.00
10831461--10831508	25	2.0	25	87	4	71	35	2	0	62	1.07
10831872--10831906	12	2.8	12	86	4	52	25	0	37	37	1.57
10831966--10832047	16	5.4	15	75	5	67	20	1	29	48	1.57
10831963--10832023	14	4.1	14	83	6	68	16	1	29	52	1.53
10832382--10832421	21	1.9	21	85	10	55	50	17	2	30	1.59
10832450--10832494	8	5.5	8	81	2	54	80	2	0	17	0.82
10833432--10833466	17	2.0	18	88	5	54	40	0	0	60	0.97
10833812--10834162	135	2.6	134	87	4	499	47	13	16	22	1.82
10833988--10834341	180	2.0	180	90	1	568	48	14	15	22	1.81
10833853--10834476	314	2.0	315	89	2	959	46	14	17	21	1.83
10834168--10834665	135	3.7	134	85	5	617	44	13	18	23	1.85
10834424--10834668	69	3.5	68	82	3	276	44	12	19	24	1.85
10834446--10834545	34	2.9	34	73	7	112	47	14	17	22	1.82
10834177--10834668	69	7.2	69	69	9	273	44	13	18	23	1.85
10834706--10835031	109	3.0	109	83	2	397	46	12	20	20	1.83
10847282--10847316	12	2.8	12	86	4	52	25	0	37	37	1.57
10848817--10848851	17	2.0	18	88	5	54	40	0	0	60	0.97
10857842--10857866	9	2.8	9	100	0	50	12	0	8	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857938--10857979	22	1.9	21	85	9	57	71	2	4	21	1.16
10858154--10858196	3	14.3	3	100	0	86	67	0	0	32	0.91
10858377--10858484	29	3.7	29	76	9	85	46	25	2	25	1.66
10858401--10858557	30	5.4	28	74	11	100	47	31	1	19	1.60
10858430--10858557	59	2.2	58	81	2	148	49	32	1	17	1.56
10858459--10858557	29	3.4	29	77	1	99	50	33	0	16	1.45
10858579--10858633	14	3.8	14	85	4	65	52	32	1	12	1.50
10858630--10858671	7	5.7	7	79	20	50	59	23	0	16	1.37
10858630--10858677	15	3.1	16	82	8	64	58	22	0	18	1.39
10858532--10858657	44	2.8	45	77	8	114	50	33	2	14	1.56
10864677--10864719	9	4.8	9	77	11	52	83	0	16	0	0.64
10864659--10864719	25	2.4	25	83	0	68	81	3	11	3	0.92
10866723--10866809	41	2.1	41	82	4	104	27	20	18	33	1.96
10866978--10867023	18	2.6	18	82	0	56	26	23	10	39	1.88
10867123--10867209	41	2.1	42	80	2	95	39	13	13	33	1.85
10867259--10867669	128	3.2	127	84	4	506	34	18	14	32	1.91
10867770--10867818	22	2.2	22	85	0	62	30	18	20	30	1.96
10867789--10867853	22	3.0	21	80	6	76	27	13	21	36	1.92
10867924--10867985	22	2.8	22	83	9	74	32	20	14	32	1.93
10867787--10868071	132	2.2	132	85	4	371	25	15	17	41	1.89
10867946--10868150	108	1.9	109	85	8	283	27	17	14	41	1.87
10868183--10868225	22	2.0	22	85	0	59	37	18	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10867847--10868291	239	1.9	240	80	4	531	25	17	16	41	1.89
10868053--10868409	132	2.7	130	80	5	389	24	18	17	39	1.91
10868359--10868445	37	2.3	38	80	2	95	10	18	22	48	1.78
10868602--10868640	20	2.0	20	89	0	60	53	2	0	43	1.14
10870023--10870080	15	3.7	15	78	17	64	68	0	3	27	1.05
10870240--10870294	14	3.9	14	76	9	58	49	29	0	21	1.50
10870241--10870583	29	11.8	29	72	15	117	48	30	1	19	1.58
10870279--10870334	27	2.1	27	86	6	78	41	26	1	30	1.66
10870327--10870486	30	5.4	30	80	8	130	49	31	1	16	1.57
10870387--10870468	16	5.7	13	76	19	74	52	31	0	15	1.44
10870530--10870583	14	3.9	14	75	0	54	57	31	0	11	1.34
10872503--10872530	1	28.0	1	100	0	56	100	0	0	0	0.00
10875498--10875531	3	11.3	3	100	0	68	67	0	0	32	0.91
10876192--10876254	29	2.2	28	82	2	72	52	3	0	44	1.17
10876868--10876916	15	3.0	16	82	11	55	65	0	8	26	1.20
10876873--10876916	15	2.7	16	89	10	63	68	0	6	25	1.14
10876873--10876917	18	2.8	16	83	12	56	68	0	6	24	1.13
10877470--10877499	15	2.0	15	100	0	60	20	13	6	60	1.55
10877739--10877823	41	2.1	41	100	0	170	37	10	11	40	1.77
10888155--10888213	26	2.3	26	80	14	68	0	25	0	74	0.82
10888147--10888241	33	3.1	31	71	14	79	1	27	1	70	1.01
10888809--10888845	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10890530--10890565	17	2.1	18	94	5	65	38	0	2	58	1.13
10890652--10890700	12	3.8	13	86	10	66	36	0	0	63	0.95
10890668--10890724	16	3.4	16	76	9	60	38	0	0	61	0.96
10890671--10890724	8	6.5	8	83	8	54	38	0	0	61	0.96
10890717--10890763	21	2.3	20	82	13	60	44	0	4	51	1.21
10890726--10890766	21	1.9	22	95	5	75	46	0	2	51	1.14
10891258--10891309	27	1.9	27	84	0	68	57	5	1	34	1.33
10892752--10892809	22	2.6	23	75	10	57	24	1	6	67	1.25
10892852--10892917	26	2.9	23	85	14	77	69	3	6	21	1.24
10892883--10892923	14	2.9	14	80	20	50	78	0	2	19	0.87
10894938--10895744	229	3.5	232	79	7	636	52	5	8	34	1.53
10895635--10895685	21	2.5	20	82	17	61	52	5	1	39	1.37
10894712--10896186	237	6.3	233	75	10	1019	50	5	9	33	1.59
10897113--10897156	22	2.0	22	95	0	79	43	22	6	27	1.78
10898178--10898212	18	1.9	18	88	0	52	48	20	5	25	1.71
10899518--10899554	2	18.5	2	94	0	65	48	2	0	48	1.15
10904700--10904963	132	2.0	132	99	0	519	45	12	5	37	1.65
10905147--10905530	211	1.8	212	82	1	502	51	7	11	30	1.64
10907291--10907336	19	2.5	19	75	13	51	21	10	0	67	1.21
10907507--10907546	21	1.9	21	85	10	55	32	2	2	62	1.22
10908482--10908524	16	2.6	17	77	3	52	65	2	13	18	1.38
10908828--10908861	17	1.9	18	94	5	61	41	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10913433--10913485	26	2.0	26	92	0	88	28	24	18	28	1.98
10915184--10915236	26	2.0	26	92	0	88	24	24	22	28	2.00
10916087--10916139	26	2.0	26	92	0	88	28	24	18	28	1.98
10914323--10929381	903	16.8	903	83	4	17743	25	24	23	25	2.00
10917888--10917938	26	2.0	27	88	7	79	31	27	11	29	1.92
10918790--10918839	26	1.9	26	95	0	91	26	24	20	30	1.98
10921469--10921521	26	2.0	26	92	0	88	28	28	18	24	1.98
10924802--10925114	171	1.8	171	86	1	457	17	29	28	24	1.98
10925116--10925173	29	2.0	29	93	0	98	12	25	25	36	1.91
10926844--10926896	26	2.0	26	100	0	106	26	26	20	26	1.99
10930720--10930993	136	2.0	136	97	0	521	29	17	17	34	1.94
10935678--10935751	37	2.0	37	97	0	139	40	4	2	52	1.34
10950370--10951168	423	1.9	420	87	2	1183	34	11	17	35	1.87
10952785--10952827	22	2.0	22	95	0	77	44	11	11	32	1.77
10953555--10953602	16	3.1	16	76	11	55	60	2	2	35	1.20
10953705--10953755	22	2.4	21	80	9	50	39	0	1	58	1.09
10958537--10958573	4	9.5	4	83	16	51	21	0	0	78	0.75
10959205--10959276	30	2.4	30	100	0	144	31	5	29	33	1.80
10959269--10959330	6	10.3	6	96	0	115	17	0	50	32	1.47
10959694--10959757	33	1.9	33	83	0	83	35	31	4	28	1.78
10965016--10965068	26	2.0	26	96	0	97	28	24	20	26	1.99
10965904--10965965	26	2.4	26	97	0	115	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10966791--10966843	26	2.0	26	92	0	88	28	28	18	24	1.98
10964258--10970640	899	7.1	902	86	3	8425	25	24	24	25	2.00
10968593--10968645	26	2.0	26	96	0	97	28	26	18	26	1.98
10969500--10969552	26	2.0	26	96	0	97	28	26	18	26	1.98
10972579--10972657	26	3.0	26	94	0	140	27	25	18	27	1.98
10973499--10973548	26	1.9	26	95	0	91	22	26	22	30	1.99
10974395--10974450	26	2.2	26	90	0	85	32	21	17	28	1.96
10970834--10976824	896	6.7	889	81	7	6473	26	24	23	25	2.00
10976179--10976260	26	3.2	26	96	0	146	29	24	18	28	1.98
10977673--10977728	26	2.2	26	96	0	103	30	23	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190