genome.fa.s223.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  175  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29083707--29083750	18	2.5	18	77	3	54	52	6	4	36	1.49
29084376--29084414	19	2.0	21	85	10	55	51	2	0	46	1.14
29088942--29088992	23	2.3	22	83	12	68	54	0	0	45	0.99
29088940--29088977	12	3.2	12	81	3	51	60	0	0	39	0.97
29088988--29089026	20	1.9	21	94	5	71	25	0	5	69	1.09
29089807--29089866	24	2.5	24	83	8	86	50	11	0	38	1.39
29089989--29090029	13	3.1	13	79	6	55	48	2	0	48	1.14
29090050--29090074	13	1.9	13	100	0	50	40	0	20	40	1.52
29098969--29099069	51	2.0	51	90	0	157	15	20	19	43	1.88
29099198--29099231	2	17.0	2	87	0	50	50	5	0	44	1.26
29099231--29099271	2	21.0	2	95	5	75	48	0	51	0	1.00
29103738--29103807	35	2.0	34	83	2	86	38	10	17	34	1.83
29107976--29108118	73	2.0	73	90	0	223	44	6	11	37	1.67
29108049--29108882	185	4.5	186	84	3	1036	41	10	11	36	1.75
29108636--29108771	62	2.2	59	75	13	134	46	9	8	36	1.66
29108057--29108882	372	2.2	373	83	3	1058	41	10	11	36	1.75
29108732--29108956	125	1.8	125	85	3	319	38	10	13	37	1.78
29116863--29116927	34	1.9	34	93	0	112	40	15	7	36	1.76
29121992--29122039	24	1.9	24	87	8	69	35	0	2	62	1.07
29122025--29122078	22	2.3	24	87	9	76	40	0	1	57	1.09
29123334--29123387	23	2.4	23	90	9	85	50	0	0	50	1.00
29125769--29125804	17	2.1	17	100	0	72	50	5	0	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29130312--29130336	6	4.2	6	100	0	50	32	16	16	36	1.90
29130831--29130944	58	2.0	58	87	0	165	32	9	11	46	1.72
29134056--29134102	16	3.1	16	79	17	55	14	8	0	76	1.01
29135084--29135142	27	2.1	28	81	3	66	11	3	5	79	1.01
29135174--29135251	17	4.2	17	68	19	50	66	0	6	26	1.15
29135414--29135677	119	2.2	124	78	8	274	48	6	6	37	1.55
29135440--29135732	119	2.4	116	74	12	248	50	6	7	36	1.55
29136440--29136708	132	2.0	132	97	0	502	38	12	15	33	1.85
29137965--29138019	18	2.8	19	76	15	51	52	1	0	45	1.11
29138663--29138691	14	2.0	15	93	6	51	51	6	6	34	1.55
29139209--29139295	34	2.6	34	86	0	120	39	8	18	34	1.80
29139838--29139881	17	2.6	17	77	0	52	50	2	0	47	1.13
29147105--29147173	29	2.3	30	85	5	86	56	1	0	42	1.08
29147444--29147473	15	2.0	15	93	0	51	26	10	0	63	1.26
29149821--29149851	2	15.5	2	100	0	62	51	0	0	48	1.00
29155246--29155272	14	1.9	14	100	0	54	81	3	0	14	0.82
29156356--29156415	23	2.6	23	75	15	61	35	6	0	58	1.24
29156314--29156495	71	2.5	73	78	12	180	36	7	6	49	1.56
29156597--29156676	41	2.0	40	87	4	117	36	7	3	52	1.48
29156409--29156710	111	2.7	110	80	9	351	32	8	6	51	1.60
29160709--29160755	16	2.9	16	75	12	60	48	2	0	48	1.13
29168671--29168709	12	3.1	12	85	7	51	79	2	10	7	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29170043--29170069	2	13.5	2	100	0	54	51	0	0	48	1.00
29176559--29176631	30	2.4	30	80	11	78	43	2	19	34	1.65
29177743--29177783	13	3.1	13	93	6	73	56	7	7	29	1.54
29177743--29177780	14	2.8	14	96	4	69	55	7	7	28	1.57
29180491--29180549	31	1.9	31	86	13	86	54	1	0	44	1.10
29180645--29180706	14	4.6	14	76	9	58	53	0	1	45	1.10
29180638--29180707	29	2.5	28	84	9	88	52	0	1	45	1.09
29181884--29181913	2	15.0	2	100	0	60	50	0	0	50	1.00
29185663--29185710	20	2.2	22	82	10	55	10	4	25	60	1.47
29187877--29187904	6	4.7	6	100	0	56	0	14	17	67	1.22
29187986--29188109	58	2.1	58	92	0	203	23	10	20	45	1.81
29190654--29190770	58	2.0	58	94	0	207	31	17	17	33	1.93
29196493--29196552	25	2.4	25	80	0	66	66	0	0	33	0.92
29198757--29198971	52	4.0	52	81	12	204	26	24	8	41	1.83
29198757--29198961	110	1.9	110	82	10	258	26	24	7	40	1.82
29198858--29198971	52	2.2	52	95	0	210	26	22	8	42	1.83
29198996--29199027	11	2.9	11	90	0	55	46	28	0	25	1.53
29199198--29199234	18	2.0	19	89	5	58	18	35	13	32	1.90
29199852--29200008	52	3.0	51	86	5	192	26	24	8	40	1.84
29200033--29200064	11	2.9	11	90	0	55	46	28	0	25	1.53
29200302--29200356	25	2.2	25	77	6	58	18	38	10	32	1.85
29201017--29201069	11	4.8	11	95	0	97	52	26	0	20	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29205811--29205841	15	2.1	15	93	0	53	83	16	0	0	0.64
29209317--29209365	19	2.6	18	87	12	71	53	0	0	46	1.00
29209318--29209362	20	2.2	21	92	7	76	53	0	0	46	1.00
29209380--29209404	2	12.5	2	100	0	50	48	0	0	52	1.00
29210252--29210444	103	1.9	103	87	6	284	37	11	20	30	1.88
29210465--29210700	131	1.8	131	80	0	292	45	13	16	25	1.83
29211940--29213692	786	2.2	785	85	4	2297	37	18	14	29	1.91
29225557--29225618	24	2.6	24	89	5	90	29	0	0	70	0.87
29225573--29225613	12	3.4	12	75	24	50	31	0	0	68	0.90
29225608--29225657	21	2.4	21	93	3	84	48	2	0	50	1.12
29227310--29227347	7	5.4	7	93	0	67	28	28	39	2	1.70
29231247--29231313	26	2.6	26	74	11	75	53	0	2	43	1.16
29231345--29231411	19	3.3	19	75	20	73	56	0	0	43	0.99
29231347--29231434	25	4.0	22	75	20	85	54	0	1	44	1.07
29231373--29231431	24	2.5	24	81	16	77	54	0	1	44	1.10
29231594--29231639	24	1.9	24	86	0	65	54	0	0	45	0.99
29236199--29236238	21	2.0	21	90	5	64	32	5	2	60	1.32
29236290--29236337	8	6.0	8	77	18	55	41	0	0	58	0.98
29236295--29236375	37	2.2	36	82	12	94	44	0	1	54	1.08
29236428--29236481	27	1.9	29	85	7	76	31	1	1	64	1.14
29249199--29249316	62	1.9	62	87	0	173	26	10	32	31	1.89
29249585--29249620	19	1.9	18	88	5	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29249575--29249629	18	2.8	19	78	8	58	49	0	1	49	1.11
29249930--29249965	11	3.3	11	88	0	54	69	0	0	30	0.89
29249940--29250030	30	3.0	30	71	15	89	62	2	0	35	1.07
29254955--29254988	17	2.0	17	94	0	59	26	14	17	41	1.88
29256112--29256141	2	15.5	2	93	6	53	53	0	0	46	1.00
29256797--29256836	20	2.0	20	90	0	62	15	5	20	60	1.53
29257021--29257070	20	2.4	21	90	3	75	46	2	0	52	1.12
29261609--29261647	19	2.1	19	85	0	51	35	5	5	53	1.45
29261937--29261970	17	2.0	17	94	0	59	26	14	17	41	1.88
29263983--29264032	20	2.4	21	90	3	75	46	2	0	52	1.12
29266008--29266092	27	3.0	28	76	15	75	55	0	0	44	0.99
29266052--29266097	14	3.2	14	79	14	58	47	0	0	52	1.00
29266247--29266276	10	3.1	10	95	4	53	36	0	0	63	0.95
29278425--29278469	23	1.9	23	81	4	54	44	15	8	31	1.77
29278344--29278514	82	2.1	83	95	1	308	50	14	10	24	1.73
29294035--29294064	4	7.5	4	100	0	60	76	0	0	23	0.78
29294750--29294789	21	1.9	21	84	0	53	42	7	0	50	1.30
29294957--29294983	2	13.5	2	100	0	54	51	0	0	48	1.00
29299666--29299703	2	19.5	2	94	5	69	52	0	0	47	1.00
29299668--29299701	17	2.0	17	100	0	68	52	0	0	47	1.00
29299666--29299705	19	2.1	19	100	0	80	52	0	0	47	1.00
29299954--29300006	2	27.0	2	76	3	54	50	1	3	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29299690--29299969	146	1.9	149	92	2	476	41	8	21	28	1.83
29299666--29299995	147	2.2	146	84	6	470	43	7	18	30	1.78
29302005--29302641	205	3.0	205	83	9	747	35	7	6	50	1.56
29303673--29303718	17	2.7	18	76	10	51	50	0	2	47	1.13
29306263--29306310	24	2.0	24	100	0	96	45	4	29	20	1.70
29312215--29312244	3	10.0	3	100	0	60	66	0	0	33	0.92
29316653--29316687	17	1.9	19	88	11	56	48	5	5	40	1.51
29324924--29324983	25	2.3	26	88	8	88	53	0	3	43	1.17
29324978--29325030	27	2.0	27	81	7	63	50	0	3	45	1.19
29331157--29331185	2	15.0	2	92	7	51	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190