genome.fa.s223.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168048.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_3, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33276047

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   

This is table  88  of  190  ( 22769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14056271--14056323	26	2.0	26	92	0	88	26	26	20	26	1.99
14058935--14058987	26	2.0	26	96	0	97	24	26	20	28	1.99
14059817--14059869	26	2.0	26	96	0	97	26	24	20	28	1.99
14060688--14060740	26	2.0	26	85	0	70	28	24	16	30	1.97
14061592--14061644	26	2.0	26	92	7	90	30	26	16	26	1.97
14062486--14062538	26	2.0	26	96	0	97	26	24	20	28	1.99
14065010--14065062	26	2.0	26	88	0	79	24	22	22	30	1.99
14068560--14068612	26	2.0	26	100	0	106	26	26	20	26	1.99
14063200--14070790	889	8.6	890	85	5	9145	25	24	24	25	2.00
14070322--14070374	26	2.0	26	92	0	88	30	24	18	26	1.98
14072522--14072577	26	2.2	26	93	0	94	26	25	19	28	1.99
14070951--14075823	901	5.5	896	85	4	6112	26	24	22	25	2.00
14073426--14073479	26	2.1	26	92	0	90	27	25	18	27	1.98
14072554--14075819	878	3.7	863	85	6	4302	26	23	23	25	2.00
14077742--14077794	26	2.0	26	100	0	106	26	26	20	26	1.99
14078644--14078696	26	2.0	26	92	0	88	28	24	18	28	1.98
14075977--14079439	897	3.9	897	87	3	4926	26	25	23	25	2.00
14078670--14080835	704	3.1	700	90	3	3263	27	24	22	25	2.00
14080939--14080989	26	2.0	26	92	0	84	25	21	21	31	1.98
14084978--14085008	12	2.6	12	89	0	53	6	70	19	3	1.22
14085192--14085241	26	1.9	26	95	0	91	24	26	20	30	1.98
14086753--14087105	158	2.2	159	86	2	496	19	29	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14087079--14087131	26	2.0	26	100	0	106	30	26	16	26	1.97
14088092--14090529	867	2.8	874	85	5	3280	26	24	23	25	2.00
14090472--14093878	904	3.8	878	85	5	4395	25	25	23	25	2.00
14094203--14094255	26	2.0	26	85	0	70	30	20	20	28	1.98
14096809--14096861	26	2.0	26	96	0	97	28	26	18	26	1.98
14098440--14098492	26	2.0	26	85	0	70	30	20	18	30	1.97
14099329--14099381	26	2.0	26	96	0	97	26	24	20	28	1.99
14097370--14100019	890	2.9	897	85	3	3651	25	24	24	25	2.00
14101033--14101085	26	2.0	26	96	0	97	26	24	22	26	2.00
14101066--14102451	711	2.0	706	90	2	2219	26	24	23	25	2.00
14102647--14102697	26	2.0	26	96	0	93	23	27	21	27	1.99
14103551--14103603	26	2.0	26	85	0	70	28	22	16	32	1.96
14104456--14104509	26	2.0	27	92	3	92	25	25	22	25	2.00
14107937--14107989	26	2.0	26	100	0	106	26	26	20	26	1.99
14110581--14110633	26	2.0	26	96	0	97	28	26	18	26	1.98
14113231--14113283	26	2.0	26	100	0	106	26	26	20	26	1.99
14114386--14114438	26	2.0	26	96	0	97	26	24	20	28	1.99
14116844--14116898	26	2.1	26	82	0	65	30	23	16	29	1.96
14117725--14117777	26	2.0	26	96	0	97	28	26	18	26	1.98
14118618--14118670	26	2.0	26	92	0	88	30	24	18	26	1.98
14118753--14119882	578	2.0	577	91	2	1858	28	23	21	26	1.99
14121920--14122054	68	2.0	68	91	0	216	18	31	29	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14122750--14124249	722	2.1	715	88	2	2177	26	24	23	25	2.00
14124361--14124413	26	2.0	26	88	0	79	28	26	16	28	1.97
14125252--14125303	25	2.0	26	92	3	88	26	25	19	28	1.98
14123488--14126933	905	3.8	888	85	5	4381	25	25	23	25	2.00
14126176--14128363	717	3.1	715	91	1	3433	27	23	22	26	2.00
14128476--14128526	26	2.0	26	92	0	84	25	25	19	29	1.99
14129378--14129430	26	2.0	26	100	0	106	26	26	20	26	1.99
14127604--14129895	898	2.5	898	89	1	3477	25	24	24	25	2.00
14131038--14131089	26	2.0	25	96	3	95	26	23	21	28	1.99
14129954--14131677	892	1.9	897	88	2	2604	25	24	24	25	2.00
14131465--14131903	225	1.9	226	90	1	702	38	20	17	23	1.93
14132146--14132198	26	2.0	26	92	0	88	28	26	20	24	1.99
14134622--14134674	26	2.0	26	96	0	97	28	24	20	26	1.99
14135513--14135565	26	2.0	26	96	0	97	28	26	18	26	1.98
14132889--14138981	891	6.8	892	87	3	8259	26	25	23	24	2.00
14136404--14136456	26	2.0	26	96	0	97	32	26	15	26	1.95
14138209--14138261	26	2.0	26	92	0	88	28	24	18	28	1.98
14139690--14140768	542	2.0	541	93	1	1849	21	24	27	26	1.99
14141220--14141272	26	2.0	26	96	0	97	28	26	18	26	1.98
14142122--14142174	26	2.0	26	96	0	97	28	26	18	26	1.98
14140348--14146359	902	6.8	900	86	4	7953	25	25	23	25	2.00
14143024--14143076	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14149717--14149768	26	2.0	26	96	0	95	30	19	21	28	1.97
14150015--14150454	226	1.9	226	91	0	711	22	17	20	38	1.93
14150829--14150880	26	2.0	26	92	3	88	28	21	25	25	1.99
14151732--14151784	26	2.0	26	88	0	79	28	18	22	30	1.98
14152485--14152537	26	2.0	26	96	0	97	26	18	26	28	1.98
14151268--14152726	753	1.9	755	89	1	2235	25	25	25	23	2.00
14153390--14153440	26	2.0	26	92	0	84	29	19	25	25	1.99
14153553--14155736	709	3.1	709	91	2	3428	25	22	24	27	2.00
14156611--14156661	25	2.0	25	92	7	86	29	17	23	29	1.97
14157499--14157551	26	2.0	26	85	0	70	28	15	26	30	1.96
14154978--14158386	892	3.8	899	85	5	4695	25	23	24	25	2.00
14154978--14158426	901	3.8	900	85	5	4705	25	23	24	26	2.00
14159990--14160042	26	2.0	26	96	0	97	28	20	24	26	1.99
14160805--14160857	26	2.0	26	96	0	97	26	18	26	28	1.98
14160831--14161206	158	2.4	158	84	4	472	22	27	29	20	1.98
14161731--14161783	26	2.0	26	88	0	79	28	26	20	24	1.99
14162634--14162686	26	2.0	26	96	0	97	26	18	26	28	1.98
14162660--14163030	158	2.3	160	84	3	453	22	28	29	19	1.98
14163680--14163732	26	2.0	26	92	0	88	28	22	22	26	1.99
14166150--14166202	26	2.0	26	88	0	79	28	26	20	24	1.99
14167078--14167134	28	2.0	28	89	6	87	24	21	24	29	1.99
14168132--14168184	26	2.0	26	92	0	88	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14167268--14169756	902	2.8	888	86	3	3415	25	22	25	26	2.00
14170602--14170654	26	2.0	26	88	0	79	28	26	20	24	1.99
14171501--14171553	26	2.0	26	96	0	97	28	20	24	26	1.99
14171815--14171865	26	2.0	26	96	0	93	27	19	23	29	1.98
14172667--14172719	26	2.0	26	92	0	88	26	18	24	30	1.98
14171835--14174320	866	2.9	859	84	4	3097	25	23	24	26	2.00
14176831--14176880	26	1.9	26	95	0	91	30	22	26	22	1.99
14174663--14179882	895	5.9	890	84	6	6320	25	24	24	25	2.00
14179444--14179496	26	2.0	26	96	0	97	26	18	26	28	1.98
14179705--14180101	219	1.8	218	91	0	659	22	19	24	32	1.98
14180553--14180602	26	1.9	26	87	0	73	30	22	24	24	1.99
14180976--14181028	26	2.0	26	88	0	79	26	18	26	28	1.98
14181412--14181468	26	2.2	26	84	3	71	21	7	19	52	1.69
14181867--14181916	26	2.0	24	92	7	82	32	12	26	30	1.92
14181874--14181926	26	2.0	26	88	0	79	30	15	24	30	1.95
14180885--14185502	909	5.1	896	86	2	6092	25	24	25	25	2.00
14183664--14183716	26	2.0	26	92	0	88	28	18	24	28	1.98
14186190--14186242	26	2.0	26	92	0	88	26	20	24	28	1.99
14187862--14187914	26	2.0	26	100	0	106	26	20	26	26	1.99
14188763--14188815	26	2.0	26	92	0	88	28	18	24	28	1.98
14189664--14189714	26	2.0	26	88	7	77	27	13	27	31	1.94
14190564--14190616	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14187211--14192575	902	6.0	901	86	3	7035	25	24	24	25	2.00
14191453--14191510	26	2.2	27	87	3	82	27	18	22	31	1.97
14194844--14194896	26	2.0	26	88	0	79	26	18	26	28	1.98
14193035--14196651	892	4.1	891	84	4	4491	25	24	24	26	2.00
14195737--14195789	26	2.0	26	100	0	106	26	20	26	26	1.99
14198221--14198272	25	2.0	26	88	3	79	26	19	25	28	1.98
14196611--14200911	887	4.8	885	85	4	5561	25	24	24	25	2.00
14200000--14200050	26	2.0	26	92	0	84	29	21	23	25	1.99
14200162--14202346	712	3.1	706	86	7	2957	25	23	24	27	2.00
14202320--14202372	26	2.0	26	92	0	88	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190